FFCP PHASE1:Mm9::chr1:94728227..94728303,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14733|HGNC=|MCL_coexpression_id=1431|UniProt=Q3U379,Q9QZF2|association_with_transcript=0bp_to_NM_016696,uc007cbs.1_5end|description=CAGE_peak_1_at_Gpc1_5end|id=chr1:94728227..94728303,+|ontology_enrichment_celltype=CL:0000221!5.90e-10!44;CL:0000133!5.90e-10!44;CL:0002319!1.92e-09!43|ontology_enrichment_celltype_v019_2=CL:0000221,5.86e-10,44;CL:0000133,5.86e-10,44;CL:0002319,1.91e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000010!9.00e-08!11;UBERON:0004121!6.85e-07!102;UBERON:0000924!6.85e-07!102;UBERON:0006601!6.85e-07!102;UBERON:0000073!8.15e-07!75;UBERON:0001016!8.15e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0000010,8.95e-08,11;UBERON:0004121,3.69e-07,95;UBERON:0000924,3.69e-07,95;UBERON:0006601,3.69e-07,95;UBERON:0001016,8.12e-07,75|phase1_expression=37.314681375417,2.44282785347553,7.27998783023258,0.30246421130683,0,2.18243053485457,4.20502753071946,1.54947988129892,1.97104211012333,3.27690336850791,1.02730780935303,1.59544317990673,0.171200729931206,0.874204024189974,0,0.202475267389826,0,0.630924330716475,0.685572168028694,0.84877930359606,7.56885282344521,0.297872853602656,0.261199789138935,11.8394392867121,13.3057383018959,1.14846392823004,5.1691439539089,4.09395342103189,0,0.504060259519861,1.10865255327652,0,0,0,0,0,0,25.9489611056883,17.9707129240474,15.7057123192139,24.7057224973026,35.5183652178392,29.1306211818692,3.02152363141385,3.95370031756107,8.07605709511399,30.5132624295735,18.7501634487184,45.2553536433012,43.941157190788,22.5378138816834,54.6259744586892,0.167782606057736,1.45072428402269,2.01656279485478,3.34437266846731,2.57880095944881,6.70373719960675,14.1621522601718,16.9277113367051,17.747279298173,21.6860500524245,24.9002542911119,28.3468410943641,36.5880554149781,25.5772841380596,109.354040339218,103.354724131498,38.3651565541367,27.5412114196649,34.0726437389239,17.7103610330358,19.8781686856452,39.4420373472152,41.7886253639511,39.5264078242309,20.9220173898839,21.1960981221412,17.9719643909805,11.0784481693363,9.33173964744578,11.4600941522487,15.9134309430787,7.31591393041184,11.3070703354839,12.9636577608414,12.9558229527184,14.3527573285481,166.446172946339,196.561627837749,4.92769630792852,4.30211938490693,4.75979933595425,1.61910957491345,1.29955283489534,0.448026887097336,24.4373291029248,25.0532574189745,23.1209544096553,27.5604868118065,56.9007415897789,28.2318250311499,7.64415719119937,14.2213340630666,36.370494889884,38.2573396867399,37.408808931094,6.2801133845483,2.07150306917737,8.01587550950054,17.868988656912,21.9215144384742,20.9860102503013,13.7157602902887,13.2875239063346,6.40899615781345,8.89901883843746,2.74738778147832,35.384422077995,105.957286715553,66.2524555381181,57.7001551230914,7.45567044872489,12.0040126774734,15.7085030110091,3.57639877292028,4.67278985573089,3.59941638596045,7.87835407853001,10.9347166765521,15.5550204958333,18.8481528169297,15.2965401769203,11.7629110371952,18.7009240103604,14.1149898868949,43.8927658194863,45.9061721551243,22.7450482590307,8.62811609134543,15.7445735984871,15.1735388926092,15.1252189036493,19.7423311364787,19.7986212530364,16.5266699167456,21.3639931996182,15.0047955028629,29.7483830247322,21.936305299467,21.6419882721657,26.5226836237366,18.9072129473407,40.0489991500492,32.5135775524551,15.723707078661,9.12877143507205,19.8157888478331,21.0280989552739,16.1558102577691,18.0585066185444,18.5463923304845,24.3847077652767,25.9728785906573,21.4431286913456,23.7184623645416,44.2651112309372,20.2004042295203,36.5322866807927,18.7150909050169,34.2110376283511,56.5793951336036,57.3025800909642,97.4338600200299,21.2392848049769,19.1402579025469,0.660837565967596,2.11560453330835,16.8497717922835,19.2756437644164,17.3971072784826,10.4875432804138,6.89371935919098,8.75037880117772,3.32170343081158,3.78807595865225,3.2673577144035,5.37182474511107,7.79856348476481,5.39291645192533,3.24207074812041,4.38110801159608,22.0014765105575,17.4800224292885,19.1603150644237,17.1067115390064,15.3222464862424,17.6742266123603,8.53693251177473,6.05201606716369,5.49495547444812,5.67626954040282,1.77871576252289,2.16898637430922,3.93117990226406,2.02375901146368,3.85434230638156,3.85883455603867,2.29163266603278,3.16465751195892,3.08056930872567,3.0201755450689,1.43768206527355,3.72140947668503,2.49630138491648,0.505157755894224,2.15276896226295,0.482443521363367,6.09685527549795,15.7277871769502,13.8520229975722,7.97801903143384,5.16318546234705,6.86775655511445,6.18913466303636,13.6593553500459,5.51723004371669,6.64394068946325,9.40783135079174,11.4704320301017,8.11619414769709,6.36455857758651,7.53956419696361,3.26343410291226,7.37646409528554,3.86311444826625,14.4495530989013,14.7686725106176,13.9344703570174,97.453777900888,36.2834452328695,32.406415776621,56.4409302059933,64.5215754471891,110.062544996703,118.609066400521,44.9339878859133,59.3279391559963,53.7591378007272,11.8888887076069,13.200427924369,38.9963672031289,37.6268876106761,3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| ||
|EntrezGene=14733 | |||
|HGNC= | |||
|MCL_coexpression_id=1431 | |||
|UniProt=Q3U379,Q9QZF2 | |||
|association_with_transcript=0bp_to_NM_016696,uc007cbs.1_5end | |||
|description=CAGE_peak_1_at_Gpc1_5end | |||
|id=chr1:94728227..94728303,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.90e-10!44;CL:0000133!5.90e-10!44;CL:0002319!1.92e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.86e-10,44;CL:0000133,5.86e-10,44;CL:0002319,1.91e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000010!9.00e-08!11;UBERON:0004121!6.85e-07!102;UBERON:0000924!6.85e-07!102;UBERON:0006601!6.85e-07!102;UBERON:0000073!8.15e-07!75;UBERON:0001016!8.15e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,8.95e-08,11;UBERON:0004121,3.69e-07,95;UBERON:0000924,3.69e-07,95;UBERON:0006601,3.69e-07,95;UBERON:0001016,8.12e-07,75 | |||
|phase1_expression=37.314681375417,2.44282785347553,7.27998783023258,0.30246421130683,0,2.18243053485457,4.20502753071946,1.54947988129892,1.97104211012333,3.27690336850791,1.02730780935303,1.59544317990673,0.171200729931206,0.874204024189974,0,0.202475267389826,0,0.630924330716475,0.685572168028694,0.84877930359606,7.56885282344521,0.297872853602656,0.261199789138935,11.8394392867121,13.3057383018959,1.14846392823004,5.1691439539089,4.09395342103189,0,0.504060259519861,1.10865255327652,0,0,0,0,0,0,25.9489611056883,17.9707129240474,15.7057123192139,24.7057224973026,35.5183652178392,29.1306211818692,3.02152363141385,3.95370031756107,8.07605709511399,30.5132624295735,18.7501634487184,45.2553536433012,43.941157190788,22.5378138816834,54.6259744586892,0.167782606057736,1.45072428402269,2.01656279485478,3.34437266846731,2.57880095944881,6.70373719960675,14.1621522601718,16.9277113367051,17.747279298173,21.6860500524245,24.9002542911119,28.3468410943641,36.5880554149781,25.5772841380596,109.354040339218,103.354724131498,38.3651565541367,27.5412114196649,34.0726437389239,17.7103610330358,19.8781686856452,39.4420373472152,41.7886253639511,39.5264078242309,20.9220173898839,21.1960981221412,17.9719643909805,11.0784481693363,9.33173964744578,11.4600941522487,15.9134309430787,7.31591393041184,11.3070703354839,12.9636577608414,12.9558229527184,14.3527573285481,166.446172946339,196.561627837749,4.92769630792852,4.30211938490693,4.75979933595425,1.61910957491345,1.29955283489534,0.448026887097336,24.4373291029248,25.0532574189745,23.1209544096553,27.5604868118065,56.9007415897789,28.2318250311499,7.64415719119937,14.2213340630666,36.370494889884,38.2573396867399,37.408808931094,6.2801133845483,2.07150306917737,8.01587550950054,17.868988656912,21.9215144384742,20.9860102503013,13.7157602902887,13.2875239063346,6.40899615781345,8.89901883843746,2.74738778147832,35.384422077995,105.957286715553,66.2524555381181,57.7001551230914,7.45567044872489,12.0040126774734,15.7085030110091,3.57639877292028,4.67278985573089,3.59941638596045,7.87835407853001,10.9347166765521,15.5550204958333,18.8481528169297,15.2965401769203,11.7629110371952,18.7009240103604,14.1149898868949,43.8927658194863,45.9061721551243,22.7450482590307,8.62811609134543,15.7445735984871,15.1735388926092,15.1252189036493,19.7423311364787,19.7986212530364,16.5266699167456,21.3639931996182,15.0047955028629,29.7483830247322,21.936305299467,21.6419882721657,26.5226836237366,18.9072129473407,40.0489991500492,32.5135775524551,15.723707078661,9.12877143507205,19.8157888478331,21.0280989552739,16.1558102577691,18.0585066185444,18.5463923304845,24.3847077652767,25.9728785906573,21.4431286913456,23.7184623645416,44.2651112309372,20.2004042295203,36.5322866807927,18.7150909050169,34.2110376283511,56.5793951336036,57.3025800909642,97.4338600200299,21.2392848049769,19.1402579025469,0.660837565967596,2.11560453330835,16.8497717922835,19.2756437644164,17.3971072784826,10.4875432804138,6.89371935919098,8.75037880117772,3.32170343081158,3.78807595865225,3.2673577144035,5.37182474511107,7.79856348476481,5.39291645192533,3.24207074812041,4.38110801159608,22.0014765105575,17.4800224292885,19.1603150644237,17.1067115390064,15.3222464862424,17.6742266123603,8.53693251177473,6.05201606716369,5.49495547444812,5.67626954040282,1.77871576252289,2.16898637430922,3.93117990226406,2.02375901146368,3.85434230638156,3.85883455603867,2.29163266603278,3.16465751195892,3.08056930872567,3.0201755450689,1.43768206527355,3.72140947668503,2.49630138491648,0.505157755894224,2.15276896226295,0.482443521363367,6.09685527549795,15.7277871769502,13.8520229975722,7.97801903143384,5.16318546234705,6.86775655511445,6.18913466303636,13.6593553500459,5.51723004371669,6.64394068946325,9.40783135079174,11.4704320301017,8.11619414769709,6.36455857758651,7.53956419696361,3.26343410291226,7.37646409528554,3.86311444826625,14.4495530989013,14.7686725106176,13.9344703570174,97.453777900888,36.2834452328695,32.406415776621,56.4409302059933,64.5215754471891,110.062544996703,118.609066400521,44.9339878859133,59.3279391559963,53.7591378007272,11.8888887076069,13.200427924369,38.9963672031289,37.6268876106761,32.0042038566719,1.32745138339963,26.220308704738,21.7672961014621,14.3339860614483,23.6241514304618,20.9055900601871,10.3371317267288,10.5424781548477,12.4774082434652,10.4292130118819,11.5960469432499,3.09406629744561,5.7874732978144,18.3662315911936,34.0213338348644,36.6516329904023,26.0690143454142,27.4687979107189,24.3532550491139,16.745572201303,11.7335854031855,51.8988573616359,3.08739757276947,20.940554123568,24.5425928577776,20.8079591002138,27.2168944327151,27.2473893576802,1.7488850197791,19.8405073151245,4.10090113914846,30.7516433265202,10.5560880600736,4.1441060541032,1.23024804948923,2.74533807847827,1.35982743995084,0.979660166265606,0.690999869022119,4.77335309007557,27.8375674351399,23.9916971209681,16.0927957824484,17.1452402731864,12.0099410060398,11.5983337890946,13.4725132832298,9.42321391142507,5.57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| |||
|short_description=p1@Gpc1 | |||
}} | |||
Revision as of 21:18, 13 September 2013
| Short description: | p1@Gpc1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gpc1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1431 |
| Association with transcript: | 0bp_to_NM_016696, uc007cbs.1_5end |
| EntrezGene: | Gpc1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| ectodermal cell | 5.86e-10 | 44 |
| neurectodermal cell | 5.86e-10 | 44 |
| neural cell | 1.91e-09 | 43 |
| Ontology term | p-value | n |
|---|---|---|
| peripheral nervous system | 8.95e-08 | 11 |
| ectoderm-derived structure | 3.69e-07 | 95 |
| ectoderm | 3.69e-07 | 95 |
| presumptive ectoderm | 3.69e-07 | 95 |
| nervous system | 8.12e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
