FFCP PHASE1:Mm9::chr4:135609258..135609330,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=67025|HGNC=|MCL_coexpression_id=565|UniProt=Q9CXW4,A2BH07|association_with_transcript=0bp_to_ENSMUST00000102536,NM_025919,uc008vhr.1,uc012dne.1_5end|description=CAGE_peak_1_at_Rpl11_5end|id=chr4:135609258..135609330,-|ontology_enrichment_celltype=CL:0000144!5.85e-11!121;CL:0000012!5.85e-11!121;CL:0000219!2.00e-10!54;CL:0000548!3.08e-10!115;CL:0000004!3.08e-10!115;CL:0000255!3.08e-10!115;CL:0002371!4.47e-10!118;CL:0000988!2.74e-09!32;CL:0002032!2.74e-09!32;CL:0000037!2.74e-09!32;CL:0000566!2.74e-09!32;CL:0000837!2.74e-09!32;CL:0000034!3.43e-09!97;CL:0000063!1.43e-08!66;CL:0002320!3.00e-08!46;CL:0000134!3.00e-08!46;CL:0000723!2.04e-07!91;CL:0000048!2.04e-07!91|ontology_enrichment_celltype_v019_2=CL:0000219,2.00e-10,54;CL:0000988,2.74e-09,32;CL:0002032,2.74e-09,32;CL:0000037,2.74e-09,32;CL:0000837,2.74e-09,32;CL:0000034,3.43e-09,97;CL:0002320,3.00e-08,46;CL:0000134,3.00e-08,46;CL:0000723,2.04e-07,91;CL:0000048,2.04e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!3.00e-08!46;UBERON:0000949!2.65e-07!72;UBERON:0002405!6.87e-07!70|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.00e-08,46;UBERON:0000949,2.65e-07,72|phase1_expression=25.7839643838718,15.0059425284925,10.9199817453489,4.83942738090928,10.5188103288733,25.1818907867835,27.7999042308676,28.2780078337052,56.3154888606667,59.6864542121083,65.4052638621429,68.524284576994,23.4545000005752,23.0789862386153,52.298232605059,37.8628750018975,25.8837894907414,25.3947043113381,22.4867671113412,32.2536135366503,15.0526623567394,38.12772526114,32.6499736423669,19.3590831580022,30.0526158197993,29.285830169866,29.2918157388171,28.2267314818515,19.3823887845501,21.4225610295941,45.8982157056481,29.8464416526027,45.5147942812582,31.6963362030877,41.5946332441835,56.5197794218874,45.5297664465083,13.811543814318,28.9094077473806,20.9409497589519,7.05877785637217,9.56263678941824,17.9638830621527,11.2048167998264,10.5432008468295,17.8040349596831,29.7308710852255,39.4625533048608,23.5064215525885,30.9143539528111,40.176103006479,33.0630898039435,36.4088255145288,30.4652099644765,29.2401605253944,32.6719483765653,20.057340795713,23.2052441524849,20.636279007679,8.99284664762456,25.9870875437533,47.0993899576094,37.3503814366679,21.1476433561129,14.8329954385046,29.1296847127901,15.8788058574755,15.3687322128622,20.3231640124616,20.9259204414121,22.5047708645979,21.1381728458815,23.1911967999194,23.1507610516263,25.7824317039056,31.2534387447407,9.91042928994498,19.025413374693,22.5801603886678,23.8714180791651,24.7016637726506,22.3992749339407,26.8015679041326,21.3849791812038,23.6837284054056,12.9636577608414,23.0642122894547,21.9951346073855,40.2106086599207,20.0264634282982,14.7830889237856,19.7897491705719,27.19885334831,20.5087212822371,22.7421746106684,17.4730485967961,16.0106638950197,16.5317412900716,27.0177444786984,23.6737514921928,27.7461536960061,17.9657068380045,12.7402619853323,14.2213340630666,45.2466275713438,43.577896861717,42.4640533812418,9.47726201668198,18.3845897389492,13.8051189330287,41.9834490774049,30.4465478312141,29.9800146432876,29.2401922672088,17.8734834846271,16.8393232381765,13.3485282576562,11.1341504828332,10.6153266233985,19.5737888436365,20.5382612168166,17.9403843660032,18.6391761218122,12.8823550685081,11.9384622883669,16.860165643767,47.8062346778622,137.977628128484,54.3860571872717,13.1815762676244,9.60751265919116,20.8586224507355,10.6032835317289,9.46147192122223,14.5451631191692,13.4660248346239,21.7936238639677,15.5508713262616,19.9650979162603,13.2578369208479,27.3252930221678,33.3358051428536,20.8872070574205,20.4958552256572,19.5264752564311,14.7330778327577,18.646643187386,16.039608985819,31.0417909823293,20.8016688184601,20.0584281546902,26.7418793561641,24.190110682627,18.1091126591527,22.0186885956499,35.4280994936918,89.1810747887808,81.5792865553647,49.4444488948331,22.3695834338342,22.7490278181663,26.6491850962302,16.8088762265499,19.2828947112456,19.2833891109223,16.9749779667798,12.6088498657821,15.179494507732,16.455984991348,14.9392392311977,10.5389452409612,14.0351987928319,13.173006917463,11.9443712696731,11.9865270681553,16.1560241435477,4.62586296177317,18.2470890997846,31.9932375802851,25.3137972327878,29.6395161040815,21.5801371346977,20.9035361214178,18.4518857329182,13.2868137232463,13.5053142873689,21.8661631656234,15.9165177632921,16.9618755793635,17.9763881730844,16.4264917904768,13.7407478545513,35.8472332801324,31.8753350181143,19.1603150644237,19.7541788009955,20.5589636397683,19.0769430101666,12.7737804991,11.513591542409,11.7749045881031,12.2163192282583,18.0836102523161,41.7112764290235,45.6016868662631,41.8243529035828,27.7918366302249,30.1471449690521,29.2819729548633,31.6465751195892,21.8882556146298,34.5947380616983,23.0029130443767,24.9334434937897,21.5305994449047,17.9331003342449,24.3980482389801,12.0610880340842,8.68339993783042,46.0464130602278,24.6077114427459,26.9894686382549,27.2240688014662,17.5881570313907,12.6163129669587,11.5128852236101,13.0837169608139,13.2878813789265,12.118562417969,13.2729284919748,12.6060036762104,11.7165737451024,7.53956419696361,17.9488875660174,21.1458637398186,16.8321415245887,14.1284519189257,17.5817529888305,28.0328756594115,10.6037789425837,32.4973465998744,30.8446607994344,19.1726823982191,22.2240982095873,21.8342700600746,22.3630459323178,19.02610297872,22.2114452012597,19.3691011193797,11.8888887076069,14.6198287764517,28.1343653794263,28.1794439681687,13.857490329693,33.1862845849907,45.8855402332915,52.3019753549019,47.7170851782422,34.8456233599312,27.9765984628974,18.6068371081119,25.8108947929029,29.5892824059319,26.5470876666085,21.0837217149998,34.0347292719017,16.6815406819356,26.4689808226026,27.0359649105957,21.8623775732224,16.1379612614469,17.1234064897988,19.5813334516524,20.3991515906782,22.2938122660525,14.192748747876,15.2164594657924,16.488625294148,12.5942252822806,17.9732516285904,23.2776070806116,21.9948805658382,12.5336759750836,14.2777482548092,22.042343622923,22.4961686079913,27.0384009959779,26.183215523652,26.6553744055999,36.3757295398371,30.9360742588817,32.328785486765,27.9163947084936,10.5013767981662,27.5212314415588,22.3651413839534,26.2452978196977,27.3905667778954,24.8933322670642,19.1507371866445,15.1255823977365,19.1081837648342,11.9245775428449,14.9121435140862,22.5477175473676,26.1653955576963,36.5663263910186,16.3338998209,27.6402022242345,24.3296820706721,24.1755911610253,20.5722928053441,15.938620352708,15.9445519745164,12.9613502816039,21.1727450820879,42.9777456415148,40.0572732942826,41.9644258218278,31.6877251331442,23.0470371546267,35.8182439569507,27.6179415816459,32.6121633332517,27.9678980423849,27.0214176166733,22.5127704508828,24.534019618284,18.9340581534142,15.8711268530648,35.9617244465985,33.1044130888965,32.2338463419031,14.1028403643499,17.0791052660576,15.7510396869848,27.0104157639623,14.5455910170255,15.2482997506608,11.5081309126794,9.16632821503035,11.3423100346834,13.7016503954128,10.5755145634558,13.5004500046361,10.8077088773813,10.8754178156209,6.21312374102184,32.0702904035106,18.3551441764474,28.5125121609404,27.2279523116489,25.1535795153579,21.3258469802016,14.8905307627082,20.3974706666505,17.6505565275498,16.172621552883,18.7574681918777,14.7128546281139,19.102867523856,16.0703132536222,16.1393667765273,19.528041342606,17.4985332176732,21.7987419123987,16.4834360321323,24.5822196624444,24.6865861717499,20.4097177083238,16.9289694862598,18.1683020790411,19.5747511263888,16.7536923625519,19.5732930973867,17.0995312434598,18.7409677107289,21.8845485946518,18.7443328636195,19.7008964751127,16.3692417267876,15.6486209597826,22.7629800957747,18.9856039232839,18.7145286756327,12.247650080753,17.2159498861959,13.8972594045295,13.6802023016049|short_description=p1@Rpl11}} | ||
|EntrezGene=67025 | |||
|HGNC= | |||
|MCL_coexpression_id=565 | |||
|UniProt=Q9CXW4,A2BH07 | |||
|association_with_transcript=0bp_to_ENSMUST00000102536,NM_025919,uc008vhr.1,uc012dne.1_5end | |||
|description=CAGE_peak_1_at_Rpl11_5end | |||
|id=chr4:135609258..135609330,- | |||
|ontology_enrichment_celltype=CL:0000144!5.85e-11!121;CL:0000012!5.85e-11!121;CL:0000219!2.00e-10!54;CL:0000548!3.08e-10!115;CL:0000004!3.08e-10!115;CL:0000255!3.08e-10!115;CL:0002371!4.47e-10!118;CL:0000988!2.74e-09!32;CL:0002032!2.74e-09!32;CL:0000037!2.74e-09!32;CL:0000566!2.74e-09!32;CL:0000837!2.74e-09!32;CL:0000034!3.43e-09!97;CL:0000063!1.43e-08!66;CL:0002320!3.00e-08!46;CL:0000134!3.00e-08!46;CL:0000723!2.04e-07!91;CL:0000048!2.04e-07!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,2.00e-10,54;CL:0000988,2.74e-09,32;CL:0002032,2.74e-09,32;CL:0000037,2.74e-09,32;CL:0000837,2.74e-09,32;CL:0000034,3.43e-09,97;CL:0002320,3.00e-08,46;CL:0000134,3.00e-08,46;CL:0000723,2.04e-07,91;CL:0000048,2.04e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!3.00e-08!46;UBERON:0000949!2.65e-07!72;UBERON:0002405!6.87e-07!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.00e-08,46;UBERON:0000949,2.65e-07,72 | |||
|phase1_expression=25.7839643838718,15.0059425284925,10.9199817453489,4.83942738090928,10.5188103288733,25.1818907867835,27.7999042308676,28.2780078337052,56.3154888606667,59.6864542121083,65.4052638621429,68.524284576994,23.4545000005752,23.0789862386153,52.298232605059,37.8628750018975,25.8837894907414,25.3947043113381,22.4867671113412,32.2536135366503,15.0526623567394,38.12772526114,32.6499736423669,19.3590831580022,30.0526158197993,29.285830169866,29.2918157388171,28.2267314818515,19.3823887845501,21.4225610295941,45.8982157056481,29.8464416526027,45.5147942812582,31.6963362030877,41.5946332441835,56.5197794218874,45.5297664465083,13.811543814318,28.9094077473806,20.9409497589519,7.05877785637217,9.56263678941824,17.9638830621527,11.2048167998264,10.5432008468295,17.8040349596831,29.7308710852255,39.4625533048608,23.5064215525885,30.9143539528111,40.176103006479,33.0630898039435,36.4088255145288,30.4652099644765,29.2401605253944,32.6719483765653,20.057340795713,23.2052441524849,20.636279007679,8.99284664762456,25.9870875437533,47.0993899576094,37.3503814366679,21.1476433561129,14.8329954385046,29.1296847127901,15.8788058574755,15.3687322128622,20.3231640124616,20.9259204414121,22.5047708645979,21.1381728458815,23.1911967999194,23.1507610516263,25.7824317039056,31.2534387447407,9.91042928994498,19.025413374693,22.5801603886678,23.8714180791651,24.7016637726506,22.3992749339407,26.8015679041326,21.3849791812038,23.6837284054056,12.9636577608414,23.0642122894547,21.9951346073855,40.2106086599207,20.0264634282982,14.7830889237856,19.7897491705719,27.19885334831,20.5087212822371,22.7421746106684,17.4730485967961,16.0106638950197,16.5317412900716,27.0177444786984,23.6737514921928,27.7461536960061,17.9657068380045,12.7402619853323,14.2213340630666,45.2466275713438,43.577896861717,42.4640533812418,9.47726201668198,18.3845897389492,13.8051189330287,41.9834490774049,30.4465478312141,29.9800146432876,29.2401922672088,17.8734834846271,16.8393232381765,13.3485282576562,11.1341504828332,10.6153266233985,19.5737888436365,20.5382612168166,17.9403843660032,18.6391761218122,12.8823550685081,11.9384622883669,16.860165643767,47.8062346778622,137.977628128484,54.3860571872717,13.1815762676244,9.60751265919116,20.8586224507355,10.6032835317289,9.46147192122223,14.5451631191692,13.4660248346239,21.7936238639677,15.5508713262616,19.9650979162603,13.2578369208479,27.3252930221678,33.3358051428536,20.8872070574205,20.4958552256572,19.5264752564311,14.7330778327577,18.646643187386,16.039608985819,31.0417909823293,20.8016688184601,20.0584281546902,26.7418793561641,24.190110682627,18.1091126591527,22.0186885956499,35.4280994936918,89.1810747887808,81.5792865553647,49.4444488948331,22.3695834338342,22.7490278181663,26.6491850962302,16.8088762265499,19.2828947112456,19.2833891109223,16.9749779667798,12.6088498657821,15.179494507732,16.455984991348,14.9392392311977,10.5389452409612,14.0351987928319,13.173006917463,11.9443712696731,11.9865270681553,16.1560241435477,4.62586296177317,18.2470890997846,31.9932375802851,25.3137972327878,29.6395161040815,21.5801371346977,20.9035361214178,18.4518857329182,13.2868137232463,13.5053142873689,21.8661631656234,15.9165177632921,16.9618755793635,17.9763881730844,16.4264917904768,13.7407478545513,35.8472332801324,31.8753350181143,19.1603150644237,19.7541788009955,20.5589636397683,19.0769430101666,12.7737804991,11.513591542409,11.7749045881031,12.2163192282583,18.0836102523161,41.7112764290235,45.6016868662631,41.8243529035828,27.7918366302249,30.1471449690521,29.2819729548633,31.6465751195892,21.8882556146298,34.5947380616983,23.0029130443767,24.9334434937897,21.5305994449047,17.9331003342449,24.3980482389801,12.0610880340842,8.68339993783042,46.0464130602278,24.6077114427459,26.9894686382549,27.2240688014662,17.5881570313907,12.6163129669587,11.5128852236101,13.0837169608139,13.2878813789265,12.118562417969,13.2729284919748,12.6060036762104,11.7165737451024,7.53956419696361,17.9488875660174,21.1458637398186,16.8321415245887,14.1284519189257,17.5817529888305,28.0328756594115,10.6037789425837,32.4973465998744,30.8446607994344,19.1726823982191,22.2240982095873,21.8342700600746,22.3630459323178,19.02610297872,22.2114452012597,19.3691011193797,11.8888887076069,14.6198287764517,28.1343653794263,28.1794439681687,13.857490329693,33.1862845849907,45.8855402332915,52.3019753549019,47.7170851782422,34.8456233599312,27.9765984628974,18.6068371081119,25.8108947929029,29.5892824059319,26.5470876666085,21.0837217149998,34.0347292719017,16.6815406819356,26.4689808226026,27.0359649105957,21.8623775732224,16.1379612614469,17.1234064897988,19.5813334516524,20.3991515906782,22.2938122660525,14.192748747876,15.2164594657924,16.488625294148,12.5942252822806,17.9732516285904,23.2776070806116,21.9948805658382,12.5336759750836,14.2777482548092,22.042343622923,22.4961686079913,27.0384009959779,26.183215523652,26.6553744055999,36.3757295398371,30.9360742588817,32.328785486765,27.9163947084936,10.5013767981662,27.5212314415588,22.3651413839534,26.2452978196977,27.3905667778954,24.8933322670642,19.1507371866445,15.1255823977365,19.1081837648342,11.9245775428449,14.9121435140862,22.5477175473676,26.1653955576963,36.5663263910186,16.3338998209,27.6402022242345,24.3296820706721,24.1755911610253,20.5722928053441,15.938620352708,15.9445519745164,12.9613502816039,21.1727450820879,42.9777456415148,40.0572732942826,41.9644258218278,31.6877251331442,23.0470371546267,35.8182439569507,27.6179415816459,32.6121633332517,27.9678980423849,27.0214176166733,22.5127704508828,24.534019618284,18.9340581534142,15.8711268530648,35.9617244465985,33.1044130888965,32.2338463419031,14.1028403643499,17.0791052660576,15.7510396869848,27.0104157639623,14.5455910170255,15.2482997506608,11.5081309126794,9.16632821503035,11.3423100346834,13.7016503954128,10.5755145634558,13.5004500046361,10.8077088773813,10.8754178156209,6.21312374102184,32.0702904035106,18.3551441764474,28.5125121609404,27.2279523116489,25.1535795153579,21.3258469802016,14.8905307627082,20.3974706666505,17.6505565275498,16.172621552883,18.7574681918777,14.7128546281139,19.102867523856,16.0703132536222,16.1393667765273,19.528041342606,17.4985332176732,21.7987419123987,16.4834360321323,24.5822196624444,24.6865861717499,20.4097177083238,16.9289694862598,18.1683020790411,19.5747511263888,16.7536923625519,19.5732930973867,17.0995312434598,18.7409677107289,21.8845485946518,18.7443328636195,19.7008964751127,16.3692417267876,15.6486209597826,22.7629800957747,18.9856039232839,18.7145286756327,12.247650080753,17.2159498861959,13.8972594045295,13.6802023016049 | |||
|short_description=p1@Rpl11 | |||
}} | |||
Revision as of 04:08, 14 September 2013
| Short description: | p1@Rpl11 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Rpl11_5end |
| Coexpression cluster: | MCL_coexpression_mm9:565 |
| Association with transcript: | 0bp_to_ENSMUST00000102536, NM_025919, uc008vhr.1, uc012dne.1_5end |
| EntrezGene: | Rpl11 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| motile cell | 2.00e-10 | 54 |
| hematopoietic cell | 2.74e-09 | 32 |
| hematopoietic oligopotent progenitor cell | 2.74e-09 | 32 |
| hematopoietic stem cell | 2.74e-09 | 32 |
| hematopoietic multipotent progenitor cell | 2.74e-09 | 32 |
| stem cell | 3.43e-09 | 97 |
| connective tissue cell | 3.00e-08 | 46 |
| mesenchymal cell | 3.00e-08 | 46 |
| somatic stem cell | 2.04e-07 | 91 |
| multi fate stem cell | 2.04e-07 | 91 |
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 3.00e-08 | 46 |
| endocrine system | 2.65e-07 | 72 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
