FFCP PHASE1:Mm9::chr4:41587415..41587435,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=1947|UniProt=|association_with_transcript=-58bp_to_ENSMUST00000127306_5end|description=CAGE_peak_2_at_ENSMUST00000127306_5end|id=chr4:41587415..41587435,-|ontology_enrichment_celltype=CL:0000221!5.87e-21!44;CL:0000133!5.87e-21!44;CL:0002319!2.81e-20!43;CL:0000540!3.92e-16!33;CL:0000047!3.92e-16!33;CL:0000031!3.92e-16!33;CL:0000404!3.92e-16!33;CL:0000055!4.58e-16!50;CL:0000393!8.48e-13!39;CL:0000211!8.48e-13!39;CL:0000117!2.98e-12!23;CL:0000337!2.98e-12!23;CL:0002321!2.13e-07!70;CL:0000220!2.13e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,2.81e-30,44;CL:0000133,2.81e-30,44;CL:0002319,1.96e-28,43;CL:0000117,2.36e-24,23;CL:0000337,2.36e-24,23;CL:0000540,5.83e-18,33;CL:0000047,5.83e-18,33;CL:0000031,5.83e-18,33;CL:0000404,5.83e-18,33;CL:0002321,7.76e-17,70;CL:0002609,5.78e-16,6;CL:0002453,5.32e-15,8;CL:0000393,1.42e-14,39;CL:0000211,1.42e-14,39;CL:0000333,8.89e-12,10;CL:0000095,8.89e-12,10;CL:0000243,8.89e-12,10;CL:0000123,8.89e-12,10;CL:0000125,8.89e-12,10;CL:0000030,8.89e-12,10;CL:0000339,8.89e-12,10;CL:0000128,1.00e-10,6;CL:0000126,1.00e-10,6;CL:0000127,1.00e-10,6;CL:0002608,5.06e-09,3;CL:0000120,1.06e-07,3;CL:0002613,1.81e-07,3;CL:0000034,2.34e-07,97;CL:0000723,2.73e-07,91;CL:0000048,2.73e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.27e-19!73;UBERON:0005743!1.27e-19!73;UBERON:0000073!1.91e-19!75;UBERON:0001016!1.91e-19!75;UBERON:0004121!5.70e-14!102;UBERON:0000924!5.70e-14!102;UBERON:0006601!5.70e-14!102;UBERON:0001049!7.54e-12!52;UBERON:0005068!7.54e-12!52;UBERON:0006241!7.54e-12!52;UBERON:0007135!7.54e-12!52;UBERON:0002020!1.42e-11!34;UBERON:0002346!4.18e-11!71;UBERON:0003075!4.18e-11!71;UBERON:0007284!4.18e-11!71;UBERON:0000033!1.37e-09!63;UBERON:0003056!3.79e-09!49;UBERON:0000955!4.94e-09!50;UBERON:0006238!4.94e-09!50;UBERON:0002616!5.13e-09!49;UBERON:0003080!5.26e-09!40;UBERON:0002791!6.99e-09!29;UBERON:0003528!6.99e-09!29;UBERON:0001893!6.99e-09!29;UBERON:0002780!7.12e-09!39;UBERON:0001890!7.12e-09!39;UBERON:0006240!7.12e-09!39|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.09e-20,34;UBERON:0001017,4.55e-19,73;UBERON:0001016,2.15e-18,75;UBERON:0003528,4.26e-16,29;UBERON:0002791,4.26e-16,29;UBERON:0001893,4.26e-16,29;UBERON:0001049,9.95e-15,52;UBERON:0005068,9.95e-15,52;UBERON:0006241,9.95e-15,52;UBERON:0007135,9.95e-15,52;UBERON:0004121,1.67e-14,95;UBERON:0000924,1.67e-14,95;UBERON:0006601,1.67e-14,95;UBERON:0000073,5.25e-14,54;UBERON:0002616,7.05e-12,46;UBERON:0000955,1.53e-11,47;UBERON:0006238,1.53e-11,47;UBERON:0002346,4.45e-11,64;UBERON:0003075,4.45e-11,64;UBERON:0007284,4.45e-11,64;UBERON:0002780,4.48e-11,39;UBERON:0001890,4.48e-11,39;UBERON:0006240,4.48e-11,39;UBERON:0003080,1.03e-10,40;UBERON:0000956,2.21e-10,21;UBERON:0001869,2.21e-10,21;UBERON:0000203,2.21e-10,21;UBERON:0010371,2.63e-10,73;UBERON:0001954,1.85e-09,7;UBERON:0003022,1.85e-09,7;UBERON:0002421,1.85e-09,7;UBERON:0000349,1.85e-09,7;UBERON:0002600,1.85e-09,7;UBERON:0003056,4.00e-08,49;UBERON:0000369,7.01e-08,5;UBERON:0002435,7.01e-08,5;UBERON:0000204,7.01e-08,5;UBERON:0010082,7.01e-08,5;UBERON:0010314,3.46e-07,92;UBERON:0002420,3.60e-07,8;UBERON:0007245,3.60e-07,8;UBERON:0010009,3.60e-07,8;UBERON:0010011,3.60e-07,8;UBERON:0000454,3.60e-07,8|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.397163804803541,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304130793658544,0,5.47673941043627,1.52617609466313,2.19686182734472,2.13872888981712,0.279972843250725,4.31257693094915,0,0,0,0.257259436035947,0.286533439938757,0,2.22548106945558,1.05798195854407,1.90149421051854,2.03306719241479,3.55717918444456,0,0,0,1.79760066311043,3.07374644257244,2.07379224616955,3.10513658162888,3.78584930432488,0.856952953211411,1.76694832761291,5.63457676388789,3.35459148563827,4.5960939330501,0,0.766124028511126,0.768032666281217,1.58263545276233,2.01272815925301,1.04182674111352,1.11673199600552,0.56276261003168,0.61119299110724,2.35702868378934,0.996601765593721,2.23679334990361,0.302904773332736,0.226714680320357,0,0,0,0.539703191637817,0.649776417447669,0,0.140444420131752,0.170430322578058,0.259786004602869,0,1.97180787687353,0,0,0,0,0,0,0,0,0,0.346970653532272,0,0.230615497256059,0.301445281105245,0.117588707135705,0,0.247194967734374,0,0.884610551949874,0.161766849947409,0.441683036920787,0.969750506270444,0,0,0,0.255457055208591,0,0,0.127070227073065,0.449371918214468,0.457500602818626,3.5183218591602,0.695297280769106,0,0.41557608911912,0.648965052271031,0.407357455401265,0.124406970610093,0,0,0.390361328888111,0.689706313300419,0.900310649026746,0.90422890701429,0.204109497453984,0.2562274405697,0.843315521037559,0,0.646703978798527,0.378212160335639,0.175951124163949,0.657587197282725,0,0.348252166522167,0.205782136407943,0.796137067273973,0,0,0,0,0.234526059981096,0,0.710234206755631,0.393528463494808,0.462801338662135,0,0.268273401399619,0.233530684734339,0.32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| ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=1947 | |||
|UniProt= | |||
|association_with_transcript=-58bp_to_ENSMUST00000127306_5end | |||
|description=CAGE_peak_2_at_ENSMUST00000127306_5end | |||
|id=chr4:41587415..41587435,- | |||
|ontology_enrichment_celltype=CL:0000221!5.87e-21!44;CL:0000133!5.87e-21!44;CL:0002319!2.81e-20!43;CL:0000540!3.92e-16!33;CL:0000047!3.92e-16!33;CL:0000031!3.92e-16!33;CL:0000404!3.92e-16!33;CL:0000055!4.58e-16!50;CL:0000393!8.48e-13!39;CL:0000211!8.48e-13!39;CL:0000117!2.98e-12!23;CL:0000337!2.98e-12!23;CL:0002321!2.13e-07!70;CL:0000220!2.13e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.81e-30,44;CL:0000133,2.81e-30,44;CL:0002319,1.96e-28,43;CL:0000117,2.36e-24,23;CL:0000337,2.36e-24,23;CL:0000540,5.83e-18,33;CL:0000047,5.83e-18,33;CL:0000031,5.83e-18,33;CL:0000404,5.83e-18,33;CL:0002321,7.76e-17,70;CL:0002609,5.78e-16,6;CL:0002453,5.32e-15,8;CL:0000393,1.42e-14,39;CL:0000211,1.42e-14,39;CL:0000333,8.89e-12,10;CL:0000095,8.89e-12,10;CL:0000243,8.89e-12,10;CL:0000123,8.89e-12,10;CL:0000125,8.89e-12,10;CL:0000030,8.89e-12,10;CL:0000339,8.89e-12,10;CL:0000128,1.00e-10,6;CL:0000126,1.00e-10,6;CL:0000127,1.00e-10,6;CL:0002608,5.06e-09,3;CL:0000120,1.06e-07,3;CL:0002613,1.81e-07,3;CL:0000034,2.34e-07,97;CL:0000723,2.73e-07,91;CL:0000048,2.73e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.27e-19!73;UBERON:0005743!1.27e-19!73;UBERON:0000073!1.91e-19!75;UBERON:0001016!1.91e-19!75;UBERON:0004121!5.70e-14!102;UBERON:0000924!5.70e-14!102;UBERON:0006601!5.70e-14!102;UBERON:0001049!7.54e-12!52;UBERON:0005068!7.54e-12!52;UBERON:0006241!7.54e-12!52;UBERON:0007135!7.54e-12!52;UBERON:0002020!1.42e-11!34;UBERON:0002346!4.18e-11!71;UBERON:0003075!4.18e-11!71;UBERON:0007284!4.18e-11!71;UBERON:0000033!1.37e-09!63;UBERON:0003056!3.79e-09!49;UBERON:0000955!4.94e-09!50;UBERON:0006238!4.94e-09!50;UBERON:0002616!5.13e-09!49;UBERON:0003080!5.26e-09!40;UBERON:0002791!6.99e-09!29;UBERON:0003528!6.99e-09!29;UBERON:0001893!6.99e-09!29;UBERON:0002780!7.12e-09!39;UBERON:0001890!7.12e-09!39;UBERON:0006240!7.12e-09!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.09e-20,34;UBERON:0001017,4.55e-19,73;UBERON:0001016,2.15e-18,75;UBERON:0003528,4.26e-16,29;UBERON:0002791,4.26e-16,29;UBERON:0001893,4.26e-16,29;UBERON:0001049,9.95e-15,52;UBERON:0005068,9.95e-15,52;UBERON:0006241,9.95e-15,52;UBERON:0007135,9.95e-15,52;UBERON:0004121,1.67e-14,95;UBERON:0000924,1.67e-14,95;UBERON:0006601,1.67e-14,95;UBERON:0000073,5.25e-14,54;UBERON:0002616,7.05e-12,46;UBERON:0000955,1.53e-11,47;UBERON:0006238,1.53e-11,47;UBERON:0002346,4.45e-11,64;UBERON:0003075,4.45e-11,64;UBERON:0007284,4.45e-11,64;UBERON:0002780,4.48e-11,39;UBERON:0001890,4.48e-11,39;UBERON:0006240,4.48e-11,39;UBERON:0003080,1.03e-10,40;UBERON:0000956,2.21e-10,21;UBERON:0001869,2.21e-10,21;UBERON:0000203,2.21e-10,21;UBERON:0010371,2.63e-10,73;UBERON:0001954,1.85e-09,7;UBERON:0003022,1.85e-09,7;UBERON:0002421,1.85e-09,7;UBERON:0000349,1.85e-09,7;UBERON:0002600,1.85e-09,7;UBERON:0003056,4.00e-08,49;UBERON:0000369,7.01e-08,5;UBERON:0002435,7.01e-08,5;UBERON:0000204,7.01e-08,5;UBERON:0010082,7.01e-08,5;UBERON:0010314,3.46e-07,92;UBERON:0002420,3.60e-07,8;UBERON:0007245,3.60e-07,8;UBERON:0010009,3.60e-07,8;UBERON:0010011,3.60e-07,8;UBERON:0000454,3.60e-07,8 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.397163804803541,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304130793658544,0,5.47673941043627,1.52617609466313,2.19686182734472,2.13872888981712,0.279972843250725,4.31257693094915,0,0,0,0.257259436035947,0.286533439938757,0,2.22548106945558,1.05798195854407,1.90149421051854,2.03306719241479,3.55717918444456,0,0,0,1.79760066311043,3.07374644257244,2.07379224616955,3.10513658162888,3.78584930432488,0.856952953211411,1.76694832761291,5.63457676388789,3.35459148563827,4.5960939330501,0,0.766124028511126,0.768032666281217,1.58263545276233,2.01272815925301,1.04182674111352,1.11673199600552,0.56276261003168,0.61119299110724,2.35702868378934,0.996601765593721,2.23679334990361,0.302904773332736,0.226714680320357,0,0,0,0.539703191637817,0.649776417447669,0,0.140444420131752,0.170430322578058,0.259786004602869,0,1.97180787687353,0,0,0,0,0,0,0,0,0,0.346970653532272,0,0.230615497256059,0.301445281105245,0.117588707135705,0,0.247194967734374,0,0.884610551949874,0.161766849947409,0.441683036920787,0.969750506270444,0,0,0,0.255457055208591,0,0,0.127070227073065,0.449371918214468,0.457500602818626,3.5183218591602,0.695297280769106,0,0.41557608911912,0.648965052271031,0.407357455401265,0.124406970610093,0,0,0.390361328888111,0.689706313300419,0.900310649026746,0.90422890701429,0.204109497453984,0.2562274405697,0.843315521037559,0,0.646703978798527,0.378212160335639,0.175951124163949,0.657587197282725,0,0.348252166522167,0.205782136407943,0.796137067273973,0,0,0,0,0.234526059981096,0,0.710234206755631,0.393528463494808,0.462801338662135,0,0.268273401399619,0.233530684734339,0.329119699826961,0.32833492815819,0.648550476366846,0.877199924551994,0.219550115291051,0.134206418760372,0.630869845692382,0.617427674275707,0,0,0,0,0,0.201683524623343,0,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0,0,0,0,0.166845105716094,0,0,0,0.241177159752417,0.763877555344259,0.287696137450811,0.648540907100142,0.274561413188081,1.43768206527355,0.372140947668503,0,1.01031551178845,0.179397413521912,0,0.369506380333209,0.37898282354097,0,0.169745085775188,0.704070744865506,0.167506257441816,0.952174563544055,0.195133647857799,0.315270288212382,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,0.321101179975584,0.35163505977661,0.163934945376675,1.00988370881749,0.631016438832513,0.780877488593277,0.861693590931196,0.955875191810208,0.668396022247182,0.849229592366497,0.809621403349789,1.46127928955656,0.790575555893047,0.321321316421807,0,0,0.162886959353576,0,0,0.728341908464944,0.604647113929502,0.188605079755898,0,0.307435147943927,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0,0.540183282093931,0.258717367565509,0.428674070063185,0.177340233642274,0.178368817602071,0.493647061806363,0.913394847343798,0,0.847328283455281,0,0,0,0.120625849856312,0,0,0,0.927126510052548,0.170870880797853,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.108005340821801,0.209088296014469,0,0.539457385539283,0.0826534557253359,0.26175594198403,0.129614973291793,0,0,0.448549638131936,0.827292452285488,0.972255941720238,0.774958940866387,0.844780627453891,0.352071715937262,0.13020438484395,0.419437377702843,0.483168241652012,0,0.316011120628178,1.01362607645082,0.513554785824136,0.129920822977795,0.358053391334963,0.39736270956253,0.120195449519969,0,0,0,0,0,0,0.116876902181569,0.226730383615211,0.221985953374065,1.07656627931371,0.839423081820392,0.965947970160952,0,0,0,0,1.12950368523413,0.460325236507177,1.14579102687879,0.68741272937475,0,0.755393897389701,0,0.45032120322422,0,0,0.518936737920883,0.399024873401031,0.170733605754134,0.486213434136588,1.88651846365184,0.735374033800057,0.44449345560323,0.412070114477788,0.320919209591815,1.01078884705519,0.50695859978048,1.32038438970253,0.280924522409647,0.384150914429216,0.631790158511746,0.952587382566147,0.347652977834566,0.578727661391115,0.412085900803307,0.441596760403192,0,0.354951612318675,0.715308569841963,0.581385666529314,0.376437521661322,0.423073039458382,0.182927972872773,0.789209134313529,0.679020569229309,0.561142271657738,0.949080144993393,0.591026894253381,0.818462086339379,0.464810523557898,0.964533054905707,0.499621155875892,0.467863216890817,0.644613162144895,0,0.441182838239031,0.231867835620421 | |||
|short_description=p2@ENSMUST00000127306 | |||
}} |
Revision as of 04:58, 14 September 2013
Short description: | p2@ENSMUST00000127306 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ENSMUST00000127306_5end |
Coexpression cluster: | MCL_coexpression_mm9:1947 |
Association with transcript: | -58bp_to_ENSMUST00000127306_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.81e-30 | 44 |
neurectodermal cell | 2.81e-30 | 44 |
neural cell | 1.96e-28 | 43 |
CNS neuron (sensu Vertebrata) | 2.36e-24 | 23 |
neuroblast (sensu Vertebrata) | 2.36e-24 | 23 |
neuron | 5.83e-18 | 33 |
neuronal stem cell | 5.83e-18 | 33 |
neuroblast | 5.83e-18 | 33 |
electrically signaling cell | 5.83e-18 | 33 |
embryonic cell | 7.76e-17 | 70 |
neuron of cerebral cortex | 5.78e-16 | 6 |
oligodendrocyte precursor cell | 5.32e-15 | 8 |
electrically responsive cell | 1.42e-14 | 39 |
electrically active cell | 1.42e-14 | 39 |
migratory neural crest cell | 8.89e-12 | 10 |
neuron associated cell | 8.89e-12 | 10 |
glial cell (sensu Vertebrata) | 8.89e-12 | 10 |
neuron associated cell (sensu Vertebrata) | 8.89e-12 | 10 |
glial cell | 8.89e-12 | 10 |
glioblast | 8.89e-12 | 10 |
glioblast (sensu Vertebrata) | 8.89e-12 | 10 |
oligodendrocyte | 1.00e-10 | 6 |
macroglial cell | 1.00e-10 | 6 |
astrocyte | 1.00e-10 | 6 |
hippocampal neuron | 5.06e-09 | 3 |
granule cell | 1.06e-07 | 3 |
striatum neuron | 1.81e-07 | 3 |
stem cell | 2.34e-07 | 97 |
somatic stem cell | 2.73e-07 | 91 |
multi fate stem cell | 2.73e-07 | 91 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.