FFCP PHASE1:Hg19::chr8:42552483..42552502,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1142|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1963|TSSclassifier=S|UniProt=|association_with_transcript=-16bp_to_ENST00000531610,ENST00000534391_5end|coexpression_cluster_id=C11|description=CAGE_peak_2_at_CHRNB3_5end|id=chr8:42552483..42552502,+|ontology_enrichment_celltype=CL:0002618!5.47e-07!3|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;2.33e-118;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.69e-55!57;UBERON:0005068!4.69e-55!57;UBERON:0006241!4.69e-55!57;UBERON:0007135!4.69e-55!57;UBERON:0002616!5.13e-53!59;UBERON:0000955!2.11e-47!69;UBERON:0006238!2.11e-47!69;UBERON:0005743!4.01e-46!86;UBERON:0001017!2.23e-45!82;UBERON:0003075!1.63e-43!86;UBERON:0007284!1.63e-43!86;UBERON:0002780!1.92e-41!41;UBERON:0001890!1.92e-41!41;UBERON:0006240!1.92e-41!41;UBERON:0002346!2.61e-41!90;UBERON:0000073!3.22e-41!94;UBERON:0001016!3.22e-41!94;UBERON:0003080!2.27e-40!42;UBERON:0007023!5.83e-39!115;UBERON:0002619!5.74e-38!22;UBERON:0001950!3.36e-36!20;UBERON:0002020!1.29e-35!34;UBERON:0003528!1.29e-35!34;UBERON:0001869!1.07e-33!32;UBERON:0000956!3.13e-33!25;UBERON:0000203!3.13e-33!25;UBERON:0001893!1.45e-31!34;UBERON:0003056!1.99e-29!61;UBERON:0002791!1.96e-28!33;UBERON:0000033!2.55e-28!123;UBERON:0000153!1.02e-26!129;UBERON:0007811!1.02e-26!129;UBERON:0004121!2.69e-20!169;UBERON:0000200!3.48e-20!6;UBERON:0000924!1.11e-19!173;UBERON:0006601!1.11e-19!173;UBERON:0004733!2.57e-19!12;UBERON:0002028!2.57e-19!12;UBERON:0007277!2.57e-19!12;UBERON:0004732!9.29e-18!13;UBERON:0001872!3.81e-16!5;UBERON:0003076!2.90e-15!15;UBERON:0003057!2.90e-15!15;UBERON:0002771!3.35e-15!3;UBERON:0001871!4.92e-15!7;UBERON:0000025!1.90e-14!194;UBERON:0002680!8.99e-14!9;UBERON:0001895!8.99e-14!9;UBERON:0010092!8.99e-14!9;UBERON:0003296!4.75e-12!4;UBERON:0010133!4.75e-12!4;UBERON:0000483!9.71e-12!309;UBERON:0001894!1.42e-11!7;UBERON:0006222!1.42e-11!7;UBERON:0000119!1.48e-11!312;UBERON:0000007!3.50e-11!2;UBERON:0004111!2.08e-10!241;UBERON:0002360!2.25e-10!2;UBERON:0000094!2.25e-10!2;UBERON:0007645!2.25e-10!2;UBERON:0002148!2.47e-10!2;UBERON:0009662!2.47e-10!2;UBERON:0002298!1.22e-09!8;UBERON:0000349!6.37e-09!5;UBERON:0000477!1.30e-08!286;UBERON:0002037!1.99e-08!6;UBERON:0006215!1.99e-08!6;UBERON:0000475!4.36e-08!365;UBERON:0000481!2.53e-07!347;UBERON:0001896!2.66e-07!3;UBERON:0005290!2.66e-07!3;UBERON:0010096!2.66e-07!3;UBERON:0000064!3.09e-07!219;UBERON:0000988!3.65e-07!3;UBERON:0006331!3.65e-07!3|ontology_enrichment_uberon_v019=UBERON:0002037;8.14e-60;6!UBERON:0002680;2.91e-40;9!UBERON:0001895;2.91e-40;9!UBERON:0004733;1.81e-30;12!UBERON:0002028;1.81e-30;12!UBERON:0004732;3.33e-28;13|ontology_enrichment_uberon_v019_2=UBERON:0002037,8.15e-60,6;UBERON:0006215,8.15e-60,6;UBERON:0002680,2.91e-40,9;UBERON:0001895,2.91e-40,9;UBERON:0010092,2.91e-40,9;UBERON:0004733,1.81e-30,12;UBERON:0002028,1.81e-30,12;UBERON:0007277,1.81e-30,12;UBERON:0004732,3.33e-28,13;UBERON:0003076,1.40e-24,15;UBERON:0003057,1.40e-24,15;UBERON:0000073,1.99e-07,53;UBERON:0002616,1.99e-07,53;UBERON:0001049,4.48e-07,56;UBERON:0005068,4.48e-07,56;UBERON:0006241,4.48e-07,56;UBERON:0007135,4.48e-07,56|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,4.5774520895125,4.97606669690511,3.84211904639612,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.668245123238271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1142 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1963 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-16bp_to_ENST00000531610,ENST00000534391_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_2_at_CHRNB3_5end | |||
|id=chr8:42552483..42552502,+ | |||
|ontology_enrichment_celltype=CL:0002618!5.47e-07!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.33e-118;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.69e-55!57;UBERON:0005068!4.69e-55!57;UBERON:0006241!4.69e-55!57;UBERON:0007135!4.69e-55!57;UBERON:0002616!5.13e-53!59;UBERON:0000955!2.11e-47!69;UBERON:0006238!2.11e-47!69;UBERON:0005743!4.01e-46!86;UBERON:0001017!2.23e-45!82;UBERON:0003075!1.63e-43!86;UBERON:0007284!1.63e-43!86;UBERON:0002780!1.92e-41!41;UBERON:0001890!1.92e-41!41;UBERON:0006240!1.92e-41!41;UBERON:0002346!2.61e-41!90;UBERON:0000073!3.22e-41!94;UBERON:0001016!3.22e-41!94;UBERON:0003080!2.27e-40!42;UBERON:0007023!5.83e-39!115;UBERON:0002619!5.74e-38!22;UBERON:0001950!3.36e-36!20;UBERON:0002020!1.29e-35!34;UBERON:0003528!1.29e-35!34;UBERON:0001869!1.07e-33!32;UBERON:0000956!3.13e-33!25;UBERON:0000203!3.13e-33!25;UBERON:0001893!1.45e-31!34;UBERON:0003056!1.99e-29!61;UBERON:0002791!1.96e-28!33;UBERON:0000033!2.55e-28!123;UBERON:0000153!1.02e-26!129;UBERON:0007811!1.02e-26!129;UBERON:0004121!2.69e-20!169;UBERON:0000200!3.48e-20!6;UBERON:0000924!1.11e-19!173;UBERON:0006601!1.11e-19!173;UBERON:0004733!2.57e-19!12;UBERON:0002028!2.57e-19!12;UBERON:0007277!2.57e-19!12;UBERON:0004732!9.29e-18!13;UBERON:0001872!3.81e-16!5;UBERON:0003076!2.90e-15!15;UBERON:0003057!2.90e-15!15;UBERON:0002771!3.35e-15!3;UBERON:0001871!4.92e-15!7;UBERON:0000025!1.90e-14!194;UBERON:0002680!8.99e-14!9;UBERON:0001895!8.99e-14!9;UBERON:0010092!8.99e-14!9;UBERON:0003296!4.75e-12!4;UBERON:0010133!4.75e-12!4;UBERON:0000483!9.71e-12!309;UBERON:0001894!1.42e-11!7;UBERON:0006222!1.42e-11!7;UBERON:0000119!1.48e-11!312;UBERON:0000007!3.50e-11!2;UBERON:0004111!2.08e-10!241;UBERON:0002360!2.25e-10!2;UBERON:0000094!2.25e-10!2;UBERON:0007645!2.25e-10!2;UBERON:0002148!2.47e-10!2;UBERON:0009662!2.47e-10!2;UBERON:0002298!1.22e-09!8;UBERON:0000349!6.37e-09!5;UBERON:0000477!1.30e-08!286;UBERON:0002037!1.99e-08!6;UBERON:0006215!1.99e-08!6;UBERON:0000475!4.36e-08!365;UBERON:0000481!2.53e-07!347;UBERON:0001896!2.66e-07!3;UBERON:0005290!2.66e-07!3;UBERON:0010096!2.66e-07!3;UBERON:0000064!3.09e-07!219;UBERON:0000988!3.65e-07!3;UBERON:0006331!3.65e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;8.14e-60;6!UBERON:0002680;2.91e-40;9!UBERON:0001895;2.91e-40;9!UBERON:0004733;1.81e-30;12!UBERON:0002028;1.81e-30;12!UBERON:0004732;3.33e-28;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,8.15e-60,6;UBERON:0006215,8.15e-60,6;UBERON:0002680,2.91e-40,9;UBERON:0001895,2.91e-40,9;UBERON:0010092,2.91e-40,9;UBERON:0004733,1.81e-30,12;UBERON:0002028,1.81e-30,12;UBERON:0007277,1.81e-30,12;UBERON:0004732,3.33e-28,13;UBERON:0003076,1.40e-24,15;UBERON:0003057,1.40e-24,15;UBERON:0000073,1.99e-07,53;UBERON:0002616,1.99e-07,53;UBERON:0001049,4.48e-07,56;UBERON:0005068,4.48e-07,56;UBERON:0006241,4.48e-07,56;UBERON:0007135,4.48e-07,56 | |||
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|short_description=p2@CHRNB3 | |||
}} |
Revision as of 05:22, 14 September 2013
Short description: | p2@CHRNB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CHRNB3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -16bp_to_ENST00000531610, ENST00000534391_5end |
EntrezGene: | CHRNB3 |
HGNC: | 1963 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 8.15e-60 | 6 |
rhombic lip | 8.15e-60 | 6 |
regional part of metencephalon | 2.91e-40 | 9 |
metencephalon | 2.91e-40 | 9 |
future metencephalon | 2.91e-40 | 9 |
segmental subdivision of hindbrain | 1.81e-30 | 12 |
hindbrain | 1.81e-30 | 12 |
presumptive hindbrain | 1.81e-30 | 12 |
segmental subdivision of nervous system | 3.33e-28 | 13 |
posterior neural tube | 1.40e-24 | 15 |
chordal neural plate | 1.40e-24 | 15 |
regional part of nervous system | 1.99e-07 | 53 |
regional part of brain | 1.99e-07 | 53 |
neural tube | 4.48e-07 | 56 |
neural rod | 4.48e-07 | 56 |
future spinal cord | 4.48e-07 | 56 |
neural keel | 4.48e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.