FFCP PHASE1:Hg19::chr8:49833978..49833996,-: Difference between revisions
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{{FFCP | 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5748,0,0,0.18378979906969,0.250707539292375,25.5374212995467,8.84281629515389,4.97501663675268,1.55149493792843,30.2792254299393,56.4212702569065,8.20279154917278,12.8494658592426,17.3804386999951,8.65601352583043,29.7112267768582,23.9488422686657,37.9878964204662,15.2215639812968,25.3179385036148,112.106540156007,94.0207752456756,6.40364075266293,218.171678984242,4.49126010532934,77.4315109931399,62.9543437541762,160.317094256401,77.2277858055195,21.1337483270578,0|short_description=p1@SNAI2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6591 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11094 | |||
|TSSclassifier=S | |||
|UniProt=O43623 | |||
|association_with_transcript=0bp_to_ENST00000020945,uc003xqp.2_5end | |||
|coexpression_cluster_id=C4759 | |||
|description=CAGE_peak_1_at_SNAI2_5end | |||
|id=chr8:49833978..49833996,- | |||
|ontology_enrichment_celltype=CL:0000055!1.23e-30!180;CL:0000057!7.04e-16!75;CL:0000220!5.29e-13!246;CL:0002321!1.14e-12!248;CL:0000680!3.33e-09!57;CL:0000056!3.33e-09!57;CL:0000355!3.33e-09!57;CL:0000183!1.71e-08!59;CL:0000221!1.88e-08!71;CL:0000187!3.42e-08!54;CL:0002077!9.41e-08!33;CL:0000393!9.70e-07!60;CL:0000211!9.70e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.15e-08;55!CL:0000723;3.59e-08;61!CL:0000048;1.20e-07;58!CL:0002077;1.46e-07;34!CL:0000349;4.80e-07;19!CL:0002320;6.68e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.80e-16,76;CL:0002321,9.99e-12,250;CL:0000680,9.62e-10,58;CL:0000056,9.62e-10,58;CL:0000355,9.62e-10,58;CL:0000187,1.05e-08,55;CL:0000221,1.41e-08,72;CL:0002077,2.35e-08,34;CL:0000349,4.79e-07,19;CL:0000393,6.35e-07,61;CL:0000211,6.35e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.15e-17!95;UBERON:0000475!1.71e-17!365;UBERON:0000486!1.12e-15!82;UBERON:0000914!2.78e-14!83;UBERON:0002329!2.78e-14!83;UBERON:0003077!2.78e-14!83;UBERON:0003059!2.78e-14!83;UBERON:0007282!2.78e-14!83;UBERON:0009618!2.78e-14!83;UBERON:0007285!2.78e-14!83;UBERON:0000468!4.73e-12!659;UBERON:0002100!2.03e-11!216;UBERON:0002199!2.71e-11!45;UBERON:0002416!2.71e-11!45;UBERON:0000481!2.72e-11!347;UBERON:0004290!3.31e-11!70;UBERON:0005256!8.44e-11!143;UBERON:0002097!7.23e-10!40;UBERON:0003104!1.15e-09!238;UBERON:0009142!1.15e-09!238;UBERON:0001134!5.00e-09!61;UBERON:0002036!5.00e-09!61;UBERON:0003082!5.00e-09!61;UBERON:0000467!7.00e-09!625;UBERON:0002385!7.51e-09!63;UBERON:0001015!7.51e-09!63;UBERON:0000383!7.51e-09!63;UBERON:0000480!1.20e-08!626;UBERON:0004923!2.08e-08!57;UBERON:0002050!4.65e-07!605;UBERON:0005423!4.65e-07!605;UBERON:0000922!5.19e-07!612;UBERON:0004119!6.05e-07!169;UBERON:0000925!6.05e-07!169;UBERON:0006595!6.05e-07!169;UBERON:0000923!8.19e-07!604;UBERON:0005291!8.19e-07!604;UBERON:0006598!8.19e-07!604;UBERON:0002532!8.19e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.96e-08;41!UBERON:0002199;3.34e-08;46!UBERON:0002416;3.34e-08;46!UBERON:0003102;4.31e-08;50!UBERON:0002384;5.87e-07;198!UBERON:0002204;6.10e-07;70!UBERON:0004923;9.44e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.09e-19,99;UBERON:0000486,2.42e-16,83;UBERON:0007524,5.53e-12,73;UBERON:0002199,5.81e-12,46;UBERON:0002416,5.81e-12,46;UBERON:0002329,8.87e-12,71;UBERON:0003059,8.87e-12,71;UBERON:0007282,8.87e-12,71;UBERON:0004290,8.87e-12,71;UBERON:0009618,8.87e-12,71;UBERON:0003077,1.69e-11,72;UBERON:0007285,1.69e-11,72;UBERON:0007503,2.10e-11,78;UBERON:0002097,1.64e-10,41;UBERON:0004923,2.30e-10,66;UBERON:0001134,1.49e-09,62;UBERON:0002036,1.49e-09,62;UBERON:0003082,1.49e-09,62;UBERON:0002385,2.30e-09,64;UBERON:0001015,2.30e-09,64;UBERON:0000383,2.30e-09,64;UBERON:0005256,8.47e-09,122;UBERON:0003104,1.77e-08,160;UBERON:0009142,1.77e-08,160;UBERON:0002100,2.96e-08,199;UBERON:0004119,2.09e-07,160;UBERON:0000925,2.09e-07,160;UBERON:0006595,2.09e-07,160;UBERON:0000165,7.40e-07,29;UBERON:0000930,7.40e-07,29;UBERON:0000033,9.02e-07,56 | |||
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| |||
|short_description=p1@SNAI2 | |||
}} |
Revision as of 05:27, 14 September 2013
Short description: | p1@SNAI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SNAI2_5end |
Coexpression cluster: | C4759_Placental_Amniotic_Mesenchymal_bone_Myoblast_Sebocyte_glioma |
Association with transcript: | 0bp_to_ENST00000020945, uc003xqp.2_5end |
EntrezGene: | SNAI2 |
HGNC: | 11094 |
UniProt: | O43623 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.80e-16 | 76 |
embryonic cell | 9.99e-12 | 250 |
muscle precursor cell | 9.62e-10 | 58 |
myoblast | 9.62e-10 | 58 |
multi-potent skeletal muscle stem cell | 9.62e-10 | 58 |
muscle cell | 1.05e-08 | 55 |
ectodermal cell | 1.41e-08 | 72 |
ecto-epithelial cell | 2.35e-08 | 34 |
extraembryonic cell | 4.79e-07 | 19 |
electrically responsive cell | 6.35e-07 | 61 |
electrically active cell | 6.35e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.09e-19 | 99 |
multilaminar epithelium | 2.42e-16 | 83 |
dense mesenchyme tissue | 5.53e-12 | 73 |
integument | 5.81e-12 | 46 |
integumental system | 5.81e-12 | 46 |
somite | 8.87e-12 | 71 |
presomitic mesoderm | 8.87e-12 | 71 |
presumptive segmental plate | 8.87e-12 | 71 |
dermomyotome | 8.87e-12 | 71 |
trunk paraxial mesoderm | 8.87e-12 | 71 |
paraxial mesoderm | 1.69e-11 | 72 |
presumptive paraxial mesoderm | 1.69e-11 | 72 |
epithelial vesicle | 2.10e-11 | 78 |
skin of body | 1.64e-10 | 41 |
organ component layer | 2.30e-10 | 66 |
skeletal muscle tissue | 1.49e-09 | 62 |
striated muscle tissue | 1.49e-09 | 62 |
myotome | 1.49e-09 | 62 |
muscle tissue | 2.30e-09 | 64 |
musculature | 2.30e-09 | 64 |
musculature of body | 2.30e-09 | 64 |
trunk mesenchyme | 8.47e-09 | 122 |
mesenchyme | 1.77e-08 | 160 |
entire embryonic mesenchyme | 1.77e-08 | 160 |
trunk | 2.96e-08 | 199 |
endoderm-derived structure | 2.09e-07 | 160 |
endoderm | 2.09e-07 | 160 |
presumptive endoderm | 2.09e-07 | 160 |
mouth | 7.40e-07 | 29 |
stomodeum | 7.40e-07 | 29 |
head | 9.02e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.