FFCP PHASE1:Mm9::chr7:53039253..53039314,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=381983|HGNC=|MCL_coexpression_id=13|UniProt=Q5XJV6|association_with_transcript=-2bp_to_ENSMUST00000072580,NM_001005511,uc009gxd.1,uc012fkq.1_5end|description=CAGE_peak_2_at_Lmtk3_5end|id=chr7:53039253..53039314,+|ontology_enrichment_celltype=CL:0000540!9.22e-15!33;CL:0000047!9.22e-15!33;CL:0000031!9.22e-15!33;CL:0000404!9.22e-15!33;CL:0000117!5.97e-14!23;CL:0000337!5.97e-14!23;CL:0000221!5.70e-13!44;CL:0000133!5.70e-13!44;CL:0002319!6.13e-13!43;CL:0000393!8.19e-10!39;CL:0000211!8.19e-10!39;CL:0000055!1.63e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-18,23;CL:0000337,1.52e-18,23;CL:0000540,5.96e-17,33;CL:0000047,5.96e-17,33;CL:0000031,5.96e-17,33;CL:0000404,5.96e-17,33;CL:0002319,1.07e-13,43;CL:0000221,4.00e-13,44;CL:0000133,4.00e-13,44;CL:0000393,1.13e-12,39;CL:0000211,1.13e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.88e-33!73;UBERON:0005743!6.88e-33!73;UBERON:0000073!2.43e-31!75;UBERON:0001016!2.43e-31!75;UBERON:0004121!6.04e-28!102;UBERON:0000924!6.04e-28!102;UBERON:0006601!6.04e-28!102;UBERON:0002346!1.03e-26!71;UBERON:0003075!1.03e-26!71;UBERON:0007284!1.03e-26!71;UBERON:0001049!3.96e-26!52;UBERON:0005068!3.96e-26!52;UBERON:0006241!3.96e-26!52;UBERON:0007135!3.96e-26!52;UBERON:0000955!5.30e-25!50;UBERON:0006238!5.30e-25!50;UBERON:0000033!7.00e-25!63;UBERON:0002616!2.56e-24!49;UBERON:0003056!4.50e-23!49;UBERON:0003080!1.50e-21!40;UBERON:0002020!5.62e-21!34;UBERON:0002780!6.69e-21!39;UBERON:0001890!6.69e-21!39;UBERON:0006240!6.69e-21!39;UBERON:0002791!3.42e-18!29;UBERON:0003528!3.42e-18!29;UBERON:0001893!3.42e-18!29;UBERON:0000956!2.74e-13!21;UBERON:0001869!2.74e-13!21;UBERON:0000203!2.74e-13!21;UBERON:0000153!3.68e-13!94;UBERON:0007811!7.53e-13!86;UBERON:0002619!6.80e-11!17;UBERON:0002021!3.68e-08!10;UBERON:0000411!3.68e-08!10;UBERON:0001950!3.68e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.36e-39,73;UBERON:0001016,7.22e-38,75;UBERON:0000073,1.27e-35,54;UBERON:0002346,1.33e-35,64;UBERON:0003075,1.33e-35,64;UBERON:0007284,1.33e-35,64;UBERON:0001049,5.82e-34,52;UBERON:0005068,5.82e-34,52;UBERON:0006241,5.82e-34,52;UBERON:0007135,5.82e-34,52;UBERON:0004121,8.10e-32,95;UBERON:0000924,8.10e-32,95;UBERON:0006601,8.10e-32,95;UBERON:0000955,4.37e-30,47;UBERON:0006238,4.37e-30,47;UBERON:0002616,3.60e-29,46;UBERON:0003056,1.24e-28,49;UBERON:0010371,1.86e-28,73;UBERON:0003080,2.81e-28,40;UBERON:0002020,1.90e-27,34;UBERON:0002780,2.17e-27,39;UBERON:0001890,2.17e-27,39;UBERON:0006240,2.17e-27,39;UBERON:0003528,1.26e-23,29;UBERON:0002791,1.26e-23,29;UBERON:0001893,1.26e-23,29;UBERON:0010314,7.24e-19,92;UBERON:0000956,6.53e-17,21;UBERON:0001869,6.53e-17,21;UBERON:0000203,6.53e-17,21;UBERON:0002619,1.22e-13,17;UBERON:0002021,1.31e-10,10;UBERON:0000411,1.31e-10,10;UBERON:0001950,1.31e-10,10;UBERON:0002420,8.05e-08,8;UBERON:0007245,8.05e-08,8;UBERON:0010009,8.05e-08,8;UBERON:0010011,8.05e-08,8;UBERON:0000454,8.05e-08,8|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,8.24919914465377,0.595745707205312,0,0,0,0,0,0.215471232685889,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,1.31811709640683,0.388859798148567,0.419959264876088,2.87505128729943,0,0,0.336093799142464,0,0,0,31.9660008158165,34.9134046319542,41.1990412279016,0,0,0,0.988866362566974,0,1.49800055259202,1.53687322128622,23.5375419940244,28.2162411113233,23.135745748652,17.9960120174396,18.1112203580323,24.8656322406357,24.4405951096503,34.9303138911808,23.1243350098716,16.98241596533,11.6740965274745,41.1485217718205,43.548118354747,32.8175423450759,6.97957497503452,14.6318278608237,14.3630352910202,22.6864010814724,22.7794689278565,30.383109669524,0.075726193333184,0,0.289864488701678,0,0,0,0,0,1.12355536105401,0,0,0,0.704217098883403,0,0,0,0,0,0,0.79928715803342,0.258937883647172,0.445326417194474,0.693941307064543,0,0,0.60289056221049,1.17588707135705,0.879666139307728,0,0.144599356919912,0,0,0,0,0,24.59358694897,20.1068838540917,0,0,0,0,32.5045687508465,48.952564501593,56.7957671550147,49.7137555749911,53.4445305820391,24.103413168909,33.2594589288903,0.305518091550949,0.373220911830279,0.505445516867349,0.631325567659422,1.04096354370163,0.689706313300419,2.16074555766419,3.46621081022145,4.150226448231,4.86832137082429,4.2165776051878,6.20888089773638,0.431135985865684,1.70195472151037,0.879755620819744,0.657587197282725,0.556094498451196,0.348252166522167,0.205782136407943,0.796137067273973,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0,0,0,0,0,0,0,0,0,0,0,65.8207539005718,47.2332170820916,0,0,0.639864751605702,0.696710015581316,0.515469845288373,0.201683524623343,0.667134131534611,0,0,0,0.754005626400808,0.198956472041151,0,0,0.432276099749388,0.199141273254367,0.189667900953082,0.571242563048644,0,1.01825663922657,0.193952487167626,0.140271639780637,0.316182685621286,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.184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| ||
|EntrezGene=381983 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q5XJV6 | |||
|association_with_transcript=-2bp_to_ENSMUST00000072580,NM_001005511,uc009gxd.1,uc012fkq.1_5end | |||
|description=CAGE_peak_2_at_Lmtk3_5end | |||
|id=chr7:53039253..53039314,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.22e-15!33;CL:0000047!9.22e-15!33;CL:0000031!9.22e-15!33;CL:0000404!9.22e-15!33;CL:0000117!5.97e-14!23;CL:0000337!5.97e-14!23;CL:0000221!5.70e-13!44;CL:0000133!5.70e-13!44;CL:0002319!6.13e-13!43;CL:0000393!8.19e-10!39;CL:0000211!8.19e-10!39;CL:0000055!1.63e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-18,23;CL:0000337,1.52e-18,23;CL:0000540,5.96e-17,33;CL:0000047,5.96e-17,33;CL:0000031,5.96e-17,33;CL:0000404,5.96e-17,33;CL:0002319,1.07e-13,43;CL:0000221,4.00e-13,44;CL:0000133,4.00e-13,44;CL:0000393,1.13e-12,39;CL:0000211,1.13e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.88e-33!73;UBERON:0005743!6.88e-33!73;UBERON:0000073!2.43e-31!75;UBERON:0001016!2.43e-31!75;UBERON:0004121!6.04e-28!102;UBERON:0000924!6.04e-28!102;UBERON:0006601!6.04e-28!102;UBERON:0002346!1.03e-26!71;UBERON:0003075!1.03e-26!71;UBERON:0007284!1.03e-26!71;UBERON:0001049!3.96e-26!52;UBERON:0005068!3.96e-26!52;UBERON:0006241!3.96e-26!52;UBERON:0007135!3.96e-26!52;UBERON:0000955!5.30e-25!50;UBERON:0006238!5.30e-25!50;UBERON:0000033!7.00e-25!63;UBERON:0002616!2.56e-24!49;UBERON:0003056!4.50e-23!49;UBERON:0003080!1.50e-21!40;UBERON:0002020!5.62e-21!34;UBERON:0002780!6.69e-21!39;UBERON:0001890!6.69e-21!39;UBERON:0006240!6.69e-21!39;UBERON:0002791!3.42e-18!29;UBERON:0003528!3.42e-18!29;UBERON:0001893!3.42e-18!29;UBERON:0000956!2.74e-13!21;UBERON:0001869!2.74e-13!21;UBERON:0000203!2.74e-13!21;UBERON:0000153!3.68e-13!94;UBERON:0007811!7.53e-13!86;UBERON:0002619!6.80e-11!17;UBERON:0002021!3.68e-08!10;UBERON:0000411!3.68e-08!10;UBERON:0001950!3.68e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.36e-39,73;UBERON:0001016,7.22e-38,75;UBERON:0000073,1.27e-35,54;UBERON:0002346,1.33e-35,64;UBERON:0003075,1.33e-35,64;UBERON:0007284,1.33e-35,64;UBERON:0001049,5.82e-34,52;UBERON:0005068,5.82e-34,52;UBERON:0006241,5.82e-34,52;UBERON:0007135,5.82e-34,52;UBERON:0004121,8.10e-32,95;UBERON:0000924,8.10e-32,95;UBERON:0006601,8.10e-32,95;UBERON:0000955,4.37e-30,47;UBERON:0006238,4.37e-30,47;UBERON:0002616,3.60e-29,46;UBERON:0003056,1.24e-28,49;UBERON:0010371,1.86e-28,73;UBERON:0003080,2.81e-28,40;UBERON:0002020,1.90e-27,34;UBERON:0002780,2.17e-27,39;UBERON:0001890,2.17e-27,39;UBERON:0006240,2.17e-27,39;UBERON:0003528,1.26e-23,29;UBERON:0002791,1.26e-23,29;UBERON:0001893,1.26e-23,29;UBERON:0010314,7.24e-19,92;UBERON:0000956,6.53e-17,21;UBERON:0001869,6.53e-17,21;UBERON:0000203,6.53e-17,21;UBERON:0002619,1.22e-13,17;UBERON:0002021,1.31e-10,10;UBERON:0000411,1.31e-10,10;UBERON:0001950,1.31e-10,10;UBERON:0002420,8.05e-08,8;UBERON:0007245,8.05e-08,8;UBERON:0010009,8.05e-08,8;UBERON:0010011,8.05e-08,8;UBERON:0000454,8.05e-08,8 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,8.24919914465377,0.595745707205312,0,0,0,0,0,0.215471232685889,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,1.31811709640683,0.388859798148567,0.419959264876088,2.87505128729943,0,0,0.336093799142464,0,0,0,31.9660008158165,34.9134046319542,41.1990412279016,0,0,0,0.988866362566974,0,1.49800055259202,1.53687322128622,23.5375419940244,28.2162411113233,23.135745748652,17.9960120174396,18.1112203580323,24.8656322406357,24.4405951096503,34.9303138911808,23.1243350098716,16.98241596533,11.6740965274745,41.1485217718205,43.548118354747,32.8175423450759,6.97957497503452,14.6318278608237,14.3630352910202,22.6864010814724,22.7794689278565,30.383109669524,0.075726193333184,0,0.289864488701678,0,0,0,0,0,1.12355536105401,0,0,0,0.704217098883403,0,0,0,0,0,0,0.79928715803342,0.258937883647172,0.445326417194474,0.693941307064543,0,0,0.60289056221049,1.17588707135705,0.879666139307728,0,0.144599356919912,0,0,0,0,0,24.59358694897,20.1068838540917,0,0,0,0,32.5045687508465,48.952564501593,56.7957671550147,49.7137555749911,53.4445305820391,24.103413168909,33.2594589288903,0.305518091550949,0.373220911830279,0.505445516867349,0.631325567659422,1.04096354370163,0.689706313300419,2.16074555766419,3.46621081022145,4.150226448231,4.86832137082429,4.2165776051878,6.20888089773638,0.431135985865684,1.70195472151037,0.879755620819744,0.657587197282725,0.556094498451196,0.348252166522167,0.205782136407943,0.796137067273973,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0,0,0,0,0,0,0,0,0,0,0,65.8207539005718,47.2332170820916,0,0,0.639864751605702,0.696710015581316,0.515469845288373,0.201683524623343,0.667134131534611,0,0,0,0.754005626400808,0.198956472041151,0,0,0.432276099749388,0.199141273254367,0.189667900953082,0.571242563048644,0,1.01825663922657,0.193952487167626,0.140271639780637,0.316182685621286,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.184753190166605,0.568474235311454,0.814824882210129,0.678980343100753,0.234690248288502,0.670025029767263,0,0,0.315270288212382,0,0.159454768657487,0,0.172684981865896,0,0,0,0,0.551873492609465,8.66973185934077,11.3695335994437,0,0,3.47059041357882,1.56175497718655,1.29254038639679,1.43381278771531,0.891194696329576,0.566153061577665,2.02405350837447,2.33804686329049,2.76701444562566,33.0960955914461,0,0.178065603667255,0.162886959353576,0.659880491890142,0,1.45668381692989,0.604647113929502,0.754420319023592,0,0.922305443831782,0.775284879504663,1.09060118843252,0.712994756769443,0.316036757935816,0,1.03135543248187,11.5749465956288,1.98067203434441,2.06973894052407,2.14337035031592,2.48276327099183,2.14042581122485,1.81003922662333,1.522324745573,0,0.21183207086382,0.220528398054962,0.32977250588296,0.161464426695906,0.241251699712623,0.119372344003136,0.328281799490123,0,10.0129663085675,0.170870880797853,0,0.185194527369712,0,0,0,0,0,0,0,0.790839983952838,0.813277868507395,0.432021363287205,0.836353184057875,0.218362563746178,0.539457385539283,0.41326727862668,0.523511883968059,0.259229946583586,0,0,0,0.165458490457098,0.194451188344048,0.387479470433193,1.35164900392623,0.234714477291508,0.39061315453185,0,0,0,0,0.202725215290164,0.410843828659309,0.129920822977795,0.179026695667481,0.198681354781265,0.120195449519969,0,0,0,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0.443971906748129,0,0,0.19318959403219,0.187682475451182,0,0,0,41.2268845110459,41.8895965221531,43.5400590213941,50.3529824267005,35.6242910280734,40.0358765616541,45.9015300157628,42.7805143063009,38.9702471726416,46.5984280576638,0.415149390336707,2.79317411380722,6.4878770186571,9.96737539980005,4.40187641518763,3.30918315210025,6.22290837844523,7.41726206060019,7.38114182061175,6.31743029409494,7.35089969681695,6.97917463128482,7.30403758265083,6.53056554529667,6.94969174362921,5.71552429539688,6.2577536010222,5.59436739344745,7.82963211526283,5.4463600449727,6.17164654293748,5.6792257970988,6.91464950847231,5.52316383202848,5.8347815857505,7.10762706290083,3.29270351170991,4.99832451731901,6.24698923690964,5.61142271657738,6.76219603307793,5.22073756590486,4.50154147486658,5.57772628269478,6.75173138433995,22.982573170291,5.38042699424439,4.94203424311086,1.72159498861959,0.220591419119515,0 | |||
|short_description=p2@Lmtk3 | |||
}} |
Revision as of 13:48, 14 September 2013
Short description: | p2@Lmtk3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lmtk3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -2bp_to_ENSMUST00000072580, NM_001005511, uc009gxd.1, uc012fkq.1_5end |
EntrezGene: | Lmtk3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.52e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.52e-18 | 23 |
neuron | 5.96e-17 | 33 |
neuronal stem cell | 5.96e-17 | 33 |
neuroblast | 5.96e-17 | 33 |
electrically signaling cell | 5.96e-17 | 33 |
neural cell | 1.07e-13 | 43 |
ectodermal cell | 4.00e-13 | 44 |
neurectodermal cell | 4.00e-13 | 44 |
electrically responsive cell | 1.13e-12 | 39 |
electrically active cell | 1.13e-12 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.