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| format=count
| format=count
}}
}}
==TFactors====
{{#vardefine:geneids_content|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]]
|?GeneID
|?Symbol
|?Description
|format=array
|headers=hide
|mainlabel=-
|sep=:
|propsep=/
|limit=100
|manysep=<MANY>
|recordsep=<RCRD>
}}
}}
{{#vardefine:db_content}}
{{#arraydefine:geneids_array|{{#var:geneids_content}}|:}}
{{
  #loop: j
  | 0         
  | {{#arraysize:geneids_array}}
  | <nowiki/>
{{#vardefine:ID|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|0 }} }}
{{#vardefine:Symbol|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|1 }} }}
{{#vardefine:Description|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|2 }} }}
{{#vardefine:PeakCount|{{#ask: [[Category:FFCP]][[EntrezGene::{{#var:ID}}]]|format=count}}}}
{{#arraydefine: defined_array{{#var:j}} |{{#var:ID}}/{{#var:Symbol}}/{{#var:Description}}/{{#var:PeakCount}}}}
{{#vardefine:db_content|{{#arrayprint:defined_array{{#var:j}} }}:{{#var:db_content}}  }}
}}
<div class="toccolours mw-collapsible" style="width:700px">
General View
<div class="mw-collapsible-content">
{{PeakCountPerSample|{{#var:db_content}}|||:|/|TF Factors and CAGE peak counts graph|Source: FANTOM5 Project,RIKEN DGT||}}
</div>
</div>
==TABLE==
Human transcription factors.
<html>
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
</style>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript">
$(document).ready(function() {
$('.tf_table').dataTable( {
"iDisplayLength": 25,
"aLengthMenu": [[25, 100, -1], [25, 100, "All"]],
"aaSorting": [[1, "asc"]],
"aoColumnDefs": [{"bSortable": false, "aTargets": ["_all"] }]
} );
} );
</script>
</html>
{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]]|mainlabel=EntreGene ID|?symbol|?description|format=ttable|class=tf_table|searchlabel=|limit=1700}}

Revision as of 15:11, 20 September 2013

GRAPH

Name:{{{name}}}
Namespace:{{{namespace}}}
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results







"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.




Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




 NameNovel motifs human sample pval
1motif1_TCGNAG
10motif10_SCGGAGASN
100motif100_GCYTNCTC
101motif101_NAGCAASA
102motif102_GCAAMGT
103motif103_CGGCTAWWT
104motif104_GTWSGMT
105motif105_KTNGNAGWMG
106motif106_KCGCANTC
107motif107_CGTCTGCGTA
... further results

8