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{{#vardefine:MOTIFCOUNT|{{#expr:{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::326]]|?name|format=count}}}} + {{#expr:{{#ask:[[Category:Motif]][[Name::AIRE]]|?#|format=count}}}}+{{#expr:{{#ask:[[Category:NonRedundantMotifCluster]][[EntrezGene::~*326*]]|?#|format=count}} }} }}
{{#expr:{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::326]]|?name|format=count}}}} + {{#expr:{{#ask:[[Category:Motif]][[Name::AIRE]]|?#|format=count}}}}+{{#expr:{{#ask:[[Category:NonRedundantMotifCluster]][[EntrezGene::~*326*]]|?#|format=count}} }}
{{#var:MOTIFCOUNT}}

Revision as of 13:40, 7 October 2013

GRAPH

Name:{{{name}}}
Namespace:{{{namespace}}}
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results







"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.




Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




 NameNovel motifs human sample pval
1motif1_TCGNAG
10motif10_SCGGAGASN
100motif100_GCYTNCTC
101motif101_NAGCAASA
102motif102_GCAAMGT
103motif103_CGGCTAWWT
104motif104_GTWSGMT
105motif105_KTNGNAGWMG
106motif106_KCGCANTC
107motif107_CGTCTGCGTA
... further results

8


0

1 + 0+2