FFCP PHASE1:Hg19::chr1:78354330..78354366,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91624 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29557 | |||
|TSSclassifier=strong | |||
|UniProt=E7EUA0 | |||
|association_with_transcript=0bp_to_ENST00000440324_5end | |||
|coexpression_cluster_id=C933 | |||
|description=CAGE_peak_3_at_NEXN_5end | |||
|id=chr1:78354330..78354366,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.02e-23!180;CL:0000680!1.43e-12!57;CL:0000056!1.43e-12!57;CL:0000355!1.43e-12!57;CL:0000057!2.02e-12!75;CL:0000187!1.86e-11!54;CL:0000183!5.72e-11!59;CL:0000393!2.10e-10!60;CL:0000211!2.10e-10!60;CL:0000192!2.02e-07!42;CL:0000514!2.02e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000187;5.30e-07;55!CL:0000136;6.32e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.32e-13,76;CL:0000680,1.40e-12,58;CL:0000056,1.40e-12,58;CL:0000355,1.40e-12,58;CL:0000187,2.39e-11,55;CL:0000393,3.52e-09,61;CL:0000211,3.52e-09,61;CL:0000136,1.94e-07,15;CL:0000192,6.04e-07,43;CL:0000514,6.04e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000355;4.10e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.80e-16!83;UBERON:0002329!1.80e-16!83;UBERON:0003077!1.80e-16!83;UBERON:0003059!1.80e-16!83;UBERON:0007282!1.80e-16!83;UBERON:0009618!1.80e-16!83;UBERON:0007285!1.80e-16!83;UBERON:0000475!7.98e-16!365;UBERON:0002385!1.22e-15!63;UBERON:0001015!1.22e-15!63;UBERON:0000383!1.22e-15!63;UBERON:0000481!1.30e-15!347;UBERON:0001134!7.88e-15!61;UBERON:0002036!7.88e-15!61;UBERON:0003082!7.88e-15!61;UBERON:0004290!4.97e-14!70;UBERON:0000468!8.24e-14!659;UBERON:0005256!8.59e-13!143;UBERON:0000486!4.67e-12!82;UBERON:0003104!7.24e-12!238;UBERON:0009142!7.24e-12!238;UBERON:0002100!1.31e-11!216;UBERON:0000467!1.77e-09!625;UBERON:0000480!2.83e-09!626;UBERON:0007023!3.69e-09!115;UBERON:0007100!1.38e-08!27;UBERON:0001009!3.35e-08!113;UBERON:0003102!7.46e-08!95;UBERON:0003103!1.52e-07!69;UBERON:0004535!3.46e-07!110;UBERON:0000477!5.10e-07!286;UBERON:0000948!5.56e-07!24;UBERON:0005498!5.56e-07!24;UBERON:0004140!5.56e-07!24;UBERON:0009881!5.56e-07!24;UBERON:0004141!5.56e-07!24;UBERON:0003084!5.56e-07!24;UBERON:0007005!5.56e-07!24;UBERON:0004139!5.56e-07!24;UBERON:0004291!5.56e-07!24;UBERON:0000119!6.74e-07!312;UBERON:0000490!8.92e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.74e-11;31!UBERON:0001015;2.74e-11;31!UBERON:0000383;2.74e-11;31!UBERON:0007100;1.21e-09;25!UBERON:0001134;2.21e-09;16!UBERON:0002036;2.21e-09;16!UBERON:0000948;9.37e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,5.76e-16,64;UBERON:0001015,5.76e-16,64;UBERON:0000383,5.76e-16,64;UBERON:0001134,4.62e-15,62;UBERON:0002036,4.62e-15,62;UBERON:0003082,4.62e-15,62;UBERON:0002329,3.08e-13,71;UBERON:0003059,3.08e-13,71;UBERON:0007282,3.08e-13,71;UBERON:0004290,3.08e-13,71;UBERON:0009618,3.08e-13,71;UBERON:0007524,4.34e-13,73;UBERON:0003077,9.11e-13,72;UBERON:0007285,9.11e-13,72;UBERON:0003104,5.30e-12,160;UBERON:0009142,5.30e-12,160;UBERON:0007503,3.09e-11,78;UBERON:0000486,4.07e-10,83;UBERON:0005256,1.23e-09,122;UBERON:0007100,2.40e-09,27;UBERON:0002100,1.28e-08,199;UBERON:0000948,1.61e-07,24;UBERON:0005498,1.61e-07,24;UBERON:0004140,1.61e-07,24;UBERON:0009881,1.61e-07,24;UBERON:0004141,1.61e-07,24;UBERON:0003084,1.61e-07,24;UBERON:0007005,1.61e-07,24;UBERON:0004139,1.61e-07,24;UBERON:0004291,1.61e-07,24;UBERON:0003102,3.09e-07,99;UBERON:0003103,4.35e-07,68 | |||
|phase1_expression=44.3295245420158,26.9766660102639,67.0942963496823,60.0439790118782,55.4231757089837,20.0637860543085,25.3299878168311,1.89515962028049,2.87304191019822,1.72013755551056,0,0,0,6.43585035392242,2.65117900582333,10.0848771967766,13.2592796165275,8.76372108464848,6.34312638427659,1.96993692922861,0.612002073732759,1.56727360739044,5.43848375549008,3.69560947696787,6.90484517771415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.5710299470943,3.35350429851818,15.2156448593801,4.69870898099936,4.51204119572301,3.18662341713812,1.5905718941022,0.486634870302636,4.44313640671119,6.65188192387692,5.18225235589444,1.30979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.208994966536811,0.258416759169329,1.06729878806013,1.33888245105868,0,0,0.24406205754817,0.367663080345869,2.43042584364528,1.60739510911344,0.22452937262617,0.788280363383256,0,0,0.183201743930407,0,0,0,6.95760732373446,8.35761376986227,22.9067882806869,8.03142538096678,1.06400514659507,3.92474320099615,3.20246987189115,6.90669135568048,24.5856717965815,4.58016285036939,3.26923806226917,2.72443369760877,9.79499071615998,1.17160715916898,1.5608003841516,0,0.896692083310806,0.587172493218824,0.323745888736263,0.421352420106746,3.87892925384297,3.56219520204127,3.09977343527296,3.56400857184616,5.93440630268536,2.73048408581408,0.718618141816238,2.35670559535693,2.00189631795143,5.54128230968366,4.82875382968922,10.1140972613676,4.6573798261045,4.42385514324082,15.9656775763087,6.83383644219416,7.41761654058466,6.00182192168805,6.18315175430633,12.8820270022815,6.70020682793723,17.3839622208504,15.5899208257918,14.1362913576704,6.25939310767636,5.01102776138317,22.0105947360301,18.5383860738858,3.73033303083073,0.193260853163297,0.272746120590835,2.29443676311203,0.121973706129595,0.795178609928912,0.580969714347592,0.10366105501537,0.504641701751257,1.45990943630332,3.12899064659632,5.14592750554308,4.14404764057442,8.8229906326076,5.0531563716871,0.709840800239063,1.51726221070292,0.964044119533928,1.98529150918309,1.08939722046203,0.949082476444386,0.674156540800822,0.784885860501384,1.53898862778556,0,0,1.2347220339942,1.47008711385542,0,0,0,0,0.245976877086227,3.43135620597051,0.878002283269004,0,0,0.370353780634118,1.62904152655162,0,1.44331342025273,1.73895607462615,41.0930429825376,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0.93733833986777,7.72717789714754,1.41775097242386,0.447792613514241,0.290633938513962,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,1.71072446022705,0.411309970813294,0,0,1.68196626518041,4.3596006883328,3.30022286194275,10.7295524078956,0,2.535908257668,15.9562869950922,10.4007436911366,0,1.41849132023278,0.532844358032199,20.1598971057988,0.542621605391443,1.64648067356154,1.62868092146868,17.7695974371273,0.791951872933429,3.01439377059586,9.58686804460323,3.29910870900788,0,0,0,13.179367052037,6.89171615004683,8.5582143024431,16.9394128801068,2.87666851570537,22.203559441747,0,0,0,0,2.54094624222463,1.30139853857622,0,0.335032530668698,1.91381625495949,0.749007023947182,0,2.90090859405225,5.64380861908043,1.00034104211935,5.69656549769445,16.4296980609338,11.9547422494098,10.2506569772058,7.61419197452636,4.21324539618807,2.27407504055985,3.10419213877515,5.97803038681893,2.39679919104214,6.0818530127658,0.587403472388222,2.74514739048685,0.413536052245775,0,0,0,0,0.30239029332968,15.3826840847642,78.725992296776,10.3844234940237,13.0701932240815,41.9599944234697,16.0853921143608,4.45254199334973,2.31314540703983,1.9531789784444,2.95657761649713,2.07701771673448,2.20799719073923,0.120859449591622,1.80455823272956,0.0920809889358963,5.28146461557191,4.00600569614778,6.81846957789005,0,1.84836809050595,0.784349769176855,0,4.53872004239366,0,0.170093705276516,1.94324324491925,0,1.89662506280697,0.501689773854853,0.509752546090077,0,1.11937377361089,0.438519753291869,0.261435451024901,1.28225062558195,4.59220503979588,18.5465684958653,5.77029665227245,4.57847324091717,6.60075999364704,0,0.650060246036521,4.82051789532479,7.83032818166188,3.69716681075147,3.99109554287937,5.23778975441216,9.7752422830129,6.52575122614028,5.79541066429486,57.2475989208521,0.495854746082934,0.768760269460425,0.638063562472921,0.2023155617111,1.85938219718914,9.12955805808856,1.3940745403212,0.616067160352178,0.532306030317022,0.869932992075073,1.29726953372744,2.57624796135584,8.55964249527235,24.6775951280606,8.95961911441977,1.535386747868,10.2705357128141,0.95460974377781,1.56989728039846,16.1885211824983,10.157870100234,5.06593330086452,1.81964233415984,1.58510321173008,1.68503382495592,3.41343617362713,0.731140468893853,1.05650146756755,9.96449353278296,4.66637925447252,0,0.551365343546124,4.644072826688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| |||
|short_description=p3@NEXN | |||
}} |
Revision as of 19:11, 10 January 2014
Short description: | p3@NEXN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NEXN_5end |
Coexpression cluster: | C933_skeletal_heart_left_penis_Cardiac_Preadipocyte_tongue |
Association with transcript: | 0bp_to_ENST00000440324_5end |
EntrezGene: | NEXN |
HGNC: | 29557 |
UniProt: | E7EUA0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.32e-13 | 76 |
muscle precursor cell | 1.40e-12 | 58 |
myoblast | 1.40e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.40e-12 | 58 |
muscle cell | 2.39e-11 | 55 |
electrically responsive cell | 3.52e-09 | 61 |
electrically active cell | 3.52e-09 | 61 |
fat cell | 1.94e-07 | 15 |
smooth muscle cell | 6.04e-07 | 43 |
smooth muscle myoblast | 6.04e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 5.76e-16 | 64 |
musculature | 5.76e-16 | 64 |
musculature of body | 5.76e-16 | 64 |
skeletal muscle tissue | 4.62e-15 | 62 |
striated muscle tissue | 4.62e-15 | 62 |
myotome | 4.62e-15 | 62 |
somite | 3.08e-13 | 71 |
presomitic mesoderm | 3.08e-13 | 71 |
presumptive segmental plate | 3.08e-13 | 71 |
dermomyotome | 3.08e-13 | 71 |
trunk paraxial mesoderm | 3.08e-13 | 71 |
dense mesenchyme tissue | 4.34e-13 | 73 |
paraxial mesoderm | 9.11e-13 | 72 |
presumptive paraxial mesoderm | 9.11e-13 | 72 |
mesenchyme | 5.30e-12 | 160 |
entire embryonic mesenchyme | 5.30e-12 | 160 |
epithelial vesicle | 3.09e-11 | 78 |
multilaminar epithelium | 4.07e-10 | 83 |
trunk mesenchyme | 1.23e-09 | 122 |
primary circulatory organ | 2.40e-09 | 27 |
trunk | 1.28e-08 | 199 |
heart | 1.61e-07 | 24 |
primitive heart tube | 1.61e-07 | 24 |
primary heart field | 1.61e-07 | 24 |
anterior lateral plate mesoderm | 1.61e-07 | 24 |
heart tube | 1.61e-07 | 24 |
heart primordium | 1.61e-07 | 24 |
cardiac mesoderm | 1.61e-07 | 24 |
cardiogenic plate | 1.61e-07 | 24 |
heart rudiment | 1.61e-07 | 24 |
surface structure | 3.09e-07 | 99 |
compound organ | 4.35e-07 | 68 |