FFCP PHASE1:Hg19::chr1:110453427..110453449,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1435 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2432 | |||
|TSSclassifier=strong | |||
|UniProt=E9PJA2 | |||
|association_with_transcript=-42bp_to_ENST00000488198_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_2_at_CSF1_5end | |||
|id=chr1:110453427..110453449,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.46e-18!180;CL:0000057!2.90e-11!75;CL:0000222!1.33e-09!119;CL:0000680!2.52e-09!57;CL:0000056!2.52e-09!57;CL:0000355!2.52e-09!57;CL:0000183!4.96e-09!59;CL:0000187!2.69e-08!54;CL:0000192!1.16e-07!42;CL:0000514!1.16e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.01e-12,76;CL:0000680,1.84e-10,58;CL:0000056,1.84e-10,58;CL:0000355,1.84e-10,58;CL:0000222,1.16e-09,121;CL:0000187,2.68e-09,55;CL:0000192,2.32e-08,43;CL:0000514,2.32e-08,43;CL:0000048,1.17e-07,427;CL:0000393,1.88e-07,61;CL:0000211,1.88e-07,61;CL:0000723,8.11e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!1.30e-08!70;UBERON:0005256!2.28e-08!143;UBERON:0001134!2.66e-08!61;UBERON:0002036!2.66e-08!61;UBERON:0003082!2.66e-08!61;UBERON:0000914!4.38e-08!83;UBERON:0002329!4.38e-08!83;UBERON:0003077!4.38e-08!83;UBERON:0003059!4.38e-08!83;UBERON:0007282!4.38e-08!83;UBERON:0009618!4.38e-08!83;UBERON:0007285!4.38e-08!83;UBERON:0002385!4.54e-08!63;UBERON:0001015!4.54e-08!63;UBERON:0000383!4.54e-08!63;UBERON:0000486!5.21e-07!82;UBERON:0000475!8.01e-07!365 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.86e-09,71;UBERON:0003059,1.86e-09,71;UBERON:0007282,1.86e-09,71;UBERON:0004290,1.86e-09,71;UBERON:0009618,1.86e-09,71;UBERON:0007503,2.02e-09,78;UBERON:0001134,4.40e-09,62;UBERON:0002036,4.40e-09,62;UBERON:0003082,4.40e-09,62;UBERON:0003077,4.60e-09,72;UBERON:0007285,4.60e-09,72;UBERON:0003104,4.97e-09,160;UBERON:0009142,4.97e-09,160;UBERON:0007524,1.10e-08,73;UBERON:0002385,1.23e-08,64;UBERON:0001015,1.23e-08,64;UBERON:0000383,1.23e-08,64;UBERON:0005256,1.74e-08,122;UBERON:0000486,1.92e-07,83 | |||
|phase1_expression=4.1786027232228,3.21150785836475,6.06103937612676,2.00146596706261,0,3.48935409640147,0,1.26343974685366,2.35067065379855,2.45733936501509,3.48900583986214,0.873765488520689,0.263766978228454,1.48519623552056,1.98838425436749,1.34465029290355,2.41077811209591,0,3.90346239032406,1.35433163884467,0.816002764977012,2.82109249330279,0.85870796139317,0.821246550437305,2.00868223351684,1.14620108621927,1.14940825229924,0.787107813136792,11.4075640286182,1.15148819429164,0.928896739896456,0,0.90361775633475,0.369754010166788,0,0,0.293600439334847,2.21598163412751,1.60435557976113,0.217010870715852,0.223915474239924,0.647787332037959,0.257575567634187,0.145398238779565,0,0,0.232429036905685,3.28934310417461,1.23882548358041,0.575384784644301,0.256160706529101,1.18241114944293,1.72372840368309,0.645484683583826,1.35426486594342,0.188242339542605,0.818718450173537,0,0,0.641858054152187,0.639337125799041,0,0.199463657621632,0.426224750532694,0,0,0.622822248995575,1.00499466102697,2.60741459210101,1.3031330682307,0,1.47311054395026,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,2.64342657158052,1.12101712596307,0.526768169550154,0.196709770113833,0.393010762749165,0.205601498999509,2.50779743086017,0.32592226663359,0.473447805734733,0,6.90744832688076,1.17842362989935,1.55073726208535,3.5204502289452,8.71020974134591,11.1851038901495,0.822189523018381,1.65810010671509,2.02862160014537,0,0,0,1.81294948316106,0.383220493601921,0,0.759059076058509,0,0,0,0,0.127986611154418,0,0,0,1.61285394579786,0.267440195783507,0.434473211648397,0,1.34140171940727,2.04580098949649,3.61439152384566,1.00267582127178,2.75208386025565,0.795285947051099,2.43317435151318,2.26883561193763,1.55210578223795,1.14185221401064,1.5062593682237,0.364295288292542,0.370784442784429,1.62273696827342,1.91542711029194,5.58423434179234,0,0,0,1.19257444420023,0,2.08284300964557,0,0.838998872419812,1.92582629358047,0.835979866147242,0.516833518338658,1.06729878806013,1.33888245105868,1.61131726843659,0,5.85748938115607,0,0.81014194788176,0.982297011124877,1.34717623575702,1.0135033243499,1.53316637465883,0,0.549605231791222,6.58902087180316,0,1.3082821564276,0.496971951695318,1.39293562831038,3.44263870114369,2.86836620748814,4.25602058638028,0,2.1349799145941,1.48000529050296,0.933633106199299,1.88594940897563,1.47115712802113,1.36221684880438,2.30470369792,2.81185718200556,2.18512053781224,1.71141546463335,4.93180645820944,1.17434498643765,0.647491777472526,1.40450806702248,1.83738754129404,1.35117749042945,2.78979609174567,2.37600571456411,2.22540236350701,3.64064544775211,10.7792721272436,1.17835279767846,1.12606667884768,1.93944880838928,2.19488810440419,1.5324389789951,3.00476117813194,1.13432183160021,1.25572744982203,2.77624605464138,1.69545520927649,3.30100205692843,1.33968288009971,1.54584324027377,2.41951913231067,7.76371128309825,2.53336213419116,0.757301322732344,2.11714766877288,0.646584227275248,3.19508633264953,0.604512589365842,2.54340888465731,0.386521706326594,0.545492241181669,0,0.243947412259191,0.265059536642971,0.348581828608555,1.0366105501537,0.504641701751257,0.36497735907583,0,4.5026865673502,1.38134921352481,2.78620756819187,0.721879481669586,0.236613600079688,0.505754070234305,0.723033089650446,0.220587945464788,0.217879444092406,0.237270619111097,0.404493924480493,0.196221465125346,1.53898862778556,2.21446636387394,1.40241773803446,2.057870056657,8.82052268313252,0,0,0,0,0.122988438543114,1.3725424823882,0.109750285408626,0,0,0.277765335475589,5.53874119027552,3.11980435583874,0,1.15930404975077,1.17408694235822,2.45422961193825,0.462985512576611,1.52203321787679,0,0,0.738651018262192,16.3802985597466,5.7966153292604,0,1.17587489739202,0,0.179117045405697,0.581267877027924,0.766765358330422,65.5242106401605,4.0502279646084,34.4164671797682,22.338592779629,21.8399409827637,0.63497894292169,2.67391897890794,0,3.4214489204541,0.514137463516618,0.300343057843917,0.285826432630578,1.56983518083505,0.43596006883328,2.27348686044945,4.39523833576444,7.15312891703765,0.845302752556,0.26593811658487,4.16029747645464,2.57207374262142,1.41849132023278,2.66422179016099,4.00338382242813,9.22456729165453,3.29296134712308,3.25736184293735,3.55391948742546,3.16780749173372,7.23454504943007,5.22920075160176,3.499054691372,2.43247561282381,1.50677127429638,4.21667878966063,0.479249710983165,0,4.27910715122155,2.02693829334611,4.52047909610843,6.80431660311603,0.560425719967636,0.591092280605782,0.862510299438069,0.385029108839245,3.04913549066956,1.30139853857622,2.31986643833309,0.502548796003046,0.637938751653163,7.49007023947182,2.99161459204025,2.48649308061621,3.6807447515742,1.50051156317903,0.271265023699736,0.415941723061614,0.713715955188647,0.630809660135739,1.87426263988341,2.40756879782175,2.27407504055985,1.03473071292505,1.99267679560631,0.921845842708516,3.21469373531907,4.11182430671755,2.40200396667599,0,1.2942852049117,0.533637789017222,0.3031275714462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| |||
|short_description=p2@CSF1 | |||
}} |
Revision as of 20:01, 10 January 2014
Short description: | p2@CSF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CSF1_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -42bp_to_ENST00000488198_5end |
EntrezGene: | CSF1 |
HGNC: | 2432 |
UniProt: | E9PJA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.01e-12 | 76 |
muscle precursor cell | 1.84e-10 | 58 |
myoblast | 1.84e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.84e-10 | 58 |
mesodermal cell | 1.16e-09 | 121 |
muscle cell | 2.68e-09 | 55 |
smooth muscle cell | 2.32e-08 | 43 |
smooth muscle myoblast | 2.32e-08 | 43 |
multi fate stem cell | 1.17e-07 | 427 |
electrically responsive cell | 1.88e-07 | 61 |
electrically active cell | 1.88e-07 | 61 |
somatic stem cell | 8.11e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
somite | 1.86e-09 | 71 |
presomitic mesoderm | 1.86e-09 | 71 |
presumptive segmental plate | 1.86e-09 | 71 |
dermomyotome | 1.86e-09 | 71 |
trunk paraxial mesoderm | 1.86e-09 | 71 |
epithelial vesicle | 2.02e-09 | 78 |
skeletal muscle tissue | 4.40e-09 | 62 |
striated muscle tissue | 4.40e-09 | 62 |
myotome | 4.40e-09 | 62 |
paraxial mesoderm | 4.60e-09 | 72 |
presumptive paraxial mesoderm | 4.60e-09 | 72 |
mesenchyme | 4.97e-09 | 160 |
entire embryonic mesenchyme | 4.97e-09 | 160 |
dense mesenchyme tissue | 1.10e-08 | 73 |
muscle tissue | 1.23e-08 | 64 |
musculature | 1.23e-08 | 64 |
musculature of body | 1.23e-08 | 64 |
trunk mesenchyme | 1.74e-08 | 122 |
multilaminar epithelium | 1.92e-07 | 83 |