FFCP PHASE1:Hg19::chr1:151798546..151798590,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6097 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10260 | |||
|TSSclassifier=strong | |||
|UniProt=F1D8P6,P51449 | |||
|association_with_transcript=0bp_to_ENST00000356728,NM_001001523,uc001ezg.2_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_2_at_RORC_5end | |||
|id=chr1:151798546..151798590,- | |||
|ontology_enrichment_celltype=CL:0000084!1.19e-28!25;CL:0000827!1.19e-28!25;CL:0000791!1.24e-23!18;CL:0000789!1.24e-23!18;CL:0002420!1.24e-23!18;CL:0002419!1.24e-23!18;CL:0000790!1.24e-23!18;CL:0000625!3.91e-16!11;CL:0000838!1.27e-15!52;CL:0000542!3.50e-15!53;CL:0000051!3.50e-15!53;CL:0000738!1.39e-14!140;CL:0002087!1.10e-11!119;CL:0000624!7.58e-11!6;CL:0000037!3.59e-10!172;CL:0000566!3.59e-10!172;CL:0002031!3.05e-09!124;CL:0000988!5.90e-09!182;CL:0002032!2.02e-08!165;CL:0000837!2.02e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.75e-42;25!CL:0000791;4.94e-33;18!CL:0000789;4.94e-33;18!CL:0002419;4.94e-33;18!CL:0000625;5.25e-25;11!CL:0000542;2.15e-12;53!CL:0000624;8.24e-12;6!CL:0000771;2.32e-10;2!CL:0000898;7.16e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.23e-42,25;CL:0000827,1.23e-42,25;CL:0000791,3.39e-33,18;CL:0000789,3.39e-33,18;CL:0002420,3.39e-33,18;CL:0002419,3.39e-33,18;CL:0000790,3.39e-33,18;CL:0000625,5.44e-25,11;CL:0000838,3.58e-21,52;CL:0000542,1.07e-20,53;CL:0000051,1.07e-20,53;CL:0000624,5.50e-12,6;CL:0000738,7.45e-11,136;CL:0000771,1.60e-10,2;CL:0002087,1.38e-09,115;CL:0002031,5.11e-09,120;CL:0000037,7.05e-08,168;CL:0002032,1.91e-07,161;CL:0000837,1.91e-07,161;CL:0000988,3.06e-07,177;CL:0000898,5.99e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.94e-33;18!CL:0000051;2.15e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.43e-17!115;UBERON:0000178!3.08e-15!15;UBERON:0000179!3.08e-15!15;UBERON:0000463!3.08e-15!15;UBERON:0004177!4.43e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.39e-13;15!UBERON:0000179;1.39e-13;15!UBERON:0000463;1.39e-13;15!UBERON:0002370;6.22e-11;2!UBERON:0005058;6.22e-11;2!UBERON:0009113;6.22e-11;2!UBERON:0002390;2.34e-10;32!UBERON:0004177;4.78e-09;5!UBERON:0005057;4.78e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.05e-13,15;UBERON:0000179,2.05e-13,15;UBERON:0000463,2.05e-13,15;UBERON:0002370,1.38e-11,4;UBERON:0005058,1.38e-11,4;UBERON:0009113,1.38e-11,4;UBERON:0003295,1.38e-11,4;UBERON:0005562,1.38e-11,4;UBERON:0004177,5.59e-11,7;UBERON:0005057,5.59e-11,7;UBERON:0000974,6.45e-08,10;UBERON:0003351,7.45e-08,6;UBERON:0001042,1.11e-07,10;UBERON:0009145,1.11e-07,10;UBERON:0006562,5.55e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0.971680998056939,2.06060454107349,0,0,0,0,0,0.309706370895104,0,0,0.236482229888585,0.344745680736619,0,1.35426486594342,0,0,0,0,0.641858054152187,0,0,0,0.426224750532694,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0.263384084775077,0.590129310341499,1.57204305099666,1.85041349099558,0,0.32592226663359,0,0,3.67654507721073,1.76763544484902,2.43687284041983,4.06205795647523,5.37983542847836,2.21100890851793,0.164437904603676,0,0.579606171470105,0,0,0,1.81294948316106,3.83220493601921,2.74901956386104,0.759059076058509,1.27426165729639,1.30216690771284,0,3.46322773878877,3.71161172347813,2.49861453104692,2.36777252044017,0.821127996921047,6.24980903996671,2.40696176205157,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.4609538596109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15249216323084,0.646882724578552,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,1.01489521846434,3.82318603571188,1.13929437434833,3.57347663186684,2.05681136543097,0.648473311192717,1.08006287447623,0.79312517629427,0,0,0,0,0,2.48996451719449,0.159426272728822,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,47.29871190308,0,0.398495976502139,2.21027132424918,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,18.3947936752326,0,0,0,0,0,0,0,0,0,0,0,0,0.884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,3.39978572953381,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0.617393264863557,1.96703604453562,0,0.245148321753905,0,0,0,0,0,0.845855261818682,1.35361564744512,0,0,0,0,0,0.917458566809082,0.286679166302903,0,0,0,1.0580536810308,0,0,0,0,0.109265571963696,0.253397002022874,0,0,0,0,0.0757786982182394,0.535928260312357,0,0,0.213233981900981,4.99935306073855,107.734301606458,105.092491302887,0,0,0,0.217716747896961,0,1.27968900727716,0.0717222053926763,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0,12.4789752026436,0 | |||
|short_description=p2@RORC | |||
}} |
Revision as of 20:51, 10 January 2014
Short description: | p2@RORC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RORC_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000356728, NM_001001523, uc001ezg.2_5end |
EntrezGene: | RORC |
HGNC: | 10260 |
UniProt: | F1D8P6P51449 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.23e-42 | 25 |
pro-T cell | 1.23e-42 | 25 |
mature alpha-beta T cell | 3.39e-33 | 18 |
alpha-beta T cell | 3.39e-33 | 18 |
immature T cell | 3.39e-33 | 18 |
mature T cell | 3.39e-33 | 18 |
immature alpha-beta T cell | 3.39e-33 | 18 |
CD8-positive, alpha-beta T cell | 5.44e-25 | 11 |
lymphoid lineage restricted progenitor cell | 3.58e-21 | 52 |
lymphocyte | 1.07e-20 | 53 |
common lymphoid progenitor | 1.07e-20 | 53 |
CD4-positive, alpha-beta T cell | 5.50e-12 | 6 |
leukocyte | 7.45e-11 | 136 |
eosinophil | 1.60e-10 | 2 |
nongranular leukocyte | 1.38e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 5.11e-09 | 120 |
hematopoietic stem cell | 7.05e-08 | 168 |
hematopoietic oligopotent progenitor cell | 1.91e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.91e-07 | 161 |
hematopoietic cell | 3.06e-07 | 177 |
naive T cell | 5.99e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.05e-13 | 15 |
haemolymphatic fluid | 2.05e-13 | 15 |
organism substance | 2.05e-13 | 15 |
thymus | 1.38e-11 | 4 |
hemolymphoid system gland | 1.38e-11 | 4 |
thymic region | 1.38e-11 | 4 |
pharyngeal gland | 1.38e-11 | 4 |
thymus primordium | 1.38e-11 | 4 |
hemopoietic organ | 5.59e-11 | 7 |
immune organ | 5.59e-11 | 7 |
neck | 6.45e-08 | 10 |
pharyngeal epithelium | 7.45e-08 | 6 |
chordate pharynx | 1.11e-07 | 10 |
pharyngeal region of foregut | 1.11e-07 | 10 |
pharynx | 5.55e-07 | 11 |