FFCP PHASE1:Hg19::chr1:153895377..153895465,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57459 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30778 | |||
|TSSclassifier=strong | |||
|UniProt=Q8WXI9 | |||
|association_with_transcript=0bp_to_ENST00000368655,NM_020699,uc001fdb.3_5end | |||
|description=CAGE_peak_1_at_GATAD2B_5end | |||
|id=chr1:153895377..153895465,- | |||
|ontology_enrichment_celltype=CL:0000542!5.26e-07!53;CL:0000051!5.26e-07!53;CL:0000838!6.13e-07!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.26e-07,53;CL:0000051,5.26e-07,53;CL:0000838,6.13e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.24e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.64e-34!115;UBERON:0001049!3.92e-22!57;UBERON:0005068!3.92e-22!57;UBERON:0006241!3.92e-22!57;UBERON:0007135!3.92e-22!57;UBERON:0000073!2.24e-21!94;UBERON:0001016!2.24e-21!94;UBERON:0001017!5.17e-21!82;UBERON:0005743!3.45e-20!86;UBERON:0000955!9.04e-20!69;UBERON:0006238!9.04e-20!69;UBERON:0002346!3.94e-18!90;UBERON:0003075!4.96e-17!86;UBERON:0007284!4.96e-17!86;UBERON:0002616!4.99e-17!59;UBERON:0003080!8.80e-17!42;UBERON:0002780!1.37e-16!41;UBERON:0001890!1.37e-16!41;UBERON:0006240!1.37e-16!41;UBERON:0001893!1.39e-14!34;UBERON:0002020!2.64e-14!34;UBERON:0003528!2.64e-14!34;UBERON:0002791!5.09e-14!33;UBERON:0000924!1.12e-13!173;UBERON:0006601!1.12e-13!173;UBERON:0001869!1.86e-13!32;UBERON:0004121!9.31e-13!169;UBERON:0003056!3.82e-12!61;UBERON:0002619!2.90e-11!22;UBERON:0000153!6.27e-11!129;UBERON:0007811!6.27e-11!129;UBERON:0001950!1.03e-10!20;UBERON:0000956!3.06e-10!25;UBERON:0000203!3.06e-10!25;UBERON:0000033!1.43e-09!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.91e-12;34!UBERON:0000073;2.57e-12;53!UBERON:0002616;2.57e-12;53!UBERON:0002780;3.00e-12;41!UBERON:0001890;3.00e-12;41!UBERON:0003528;3.67e-12;34!UBERON:0002020;3.67e-12;34!UBERON:0002791;4.25e-12;32!UBERON:0001869;5.16e-12;32!UBERON:0002619;2.97e-11;22!UBERON:0001950;1.04e-10;20!UBERON:0000956;2.95e-10;25!UBERON:0000203;2.95e-10;25!UBERON:0001016;5.61e-10;83!UBERON:0007023;1.27e-09;114!UBERON:0001017;1.64e-09;75!UBERON:0000955;3.40e-09;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.13e-34,114;UBERON:0001049,6.22e-22,56;UBERON:0005068,6.22e-22,56;UBERON:0006241,6.22e-22,56;UBERON:0007135,6.22e-22,56;UBERON:0001016,6.30e-22,89;UBERON:0001017,8.74e-21,81;UBERON:0000073,1.07e-20,53;UBERON:0002616,1.07e-20,53;UBERON:0000955,1.50e-19,68;UBERON:0006238,1.50e-19,68;UBERON:0002346,7.80e-18,86;UBERON:0003075,9.77e-17,82;UBERON:0007284,9.77e-17,82;UBERON:0002780,1.37e-16,41;UBERON:0001890,1.37e-16,41;UBERON:0003080,1.37e-16,41;UBERON:0006240,1.37e-16,41;UBERON:0001893,1.39e-14,34;UBERON:0010371,2.40e-14,104;UBERON:0003528,2.64e-14,34;UBERON:0002020,2.64e-14,34;UBERON:0001869,1.86e-13,32;UBERON:0002791,2.08e-13,32;UBERON:0004121,3.62e-13,171;UBERON:0000924,3.62e-13,171;UBERON:0006601,3.62e-13,171;UBERON:0003056,1.90e-12,61;UBERON:0002619,2.90e-11,22;UBERON:0001950,1.03e-10,20;UBERON:0000956,3.06e-10,25;UBERON:0000203,3.06e-10,25;UBERON:0011216,2.85e-09,223 | |||
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| |||
|short_description=p1@GATAD2B | |||
}} |
Revision as of 21:04, 10 January 2014
Short description: | p1@GATAD2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GATAD2B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368655, NM_020699, uc001fdb.3_5end |
EntrezGene: | GATAD2B |
HGNC: | 30778 |
UniProt: | Q8WXI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.26e-07 | 53 |
common lymphoid progenitor | 5.26e-07 | 53 |
lymphoid lineage restricted progenitor cell | 6.13e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.13e-34 | 114 |
neural tube | 6.22e-22 | 56 |
neural rod | 6.22e-22 | 56 |
future spinal cord | 6.22e-22 | 56 |
neural keel | 6.22e-22 | 56 |
nervous system | 6.30e-22 | 89 |
central nervous system | 8.74e-21 | 81 |
regional part of nervous system | 1.07e-20 | 53 |
regional part of brain | 1.07e-20 | 53 |
brain | 1.50e-19 | 68 |
future brain | 1.50e-19 | 68 |
neurectoderm | 7.80e-18 | 86 |
neural plate | 9.77e-17 | 82 |
presumptive neural plate | 9.77e-17 | 82 |
regional part of forebrain | 1.37e-16 | 41 |
forebrain | 1.37e-16 | 41 |
anterior neural tube | 1.37e-16 | 41 |
future forebrain | 1.37e-16 | 41 |
telencephalon | 1.39e-14 | 34 |
ecto-epithelium | 2.40e-14 | 104 |
brain grey matter | 2.64e-14 | 34 |
gray matter | 2.64e-14 | 34 |
cerebral hemisphere | 1.86e-13 | 32 |
regional part of telencephalon | 2.08e-13 | 32 |
ectoderm-derived structure | 3.62e-13 | 171 |
ectoderm | 3.62e-13 | 171 |
presumptive ectoderm | 3.62e-13 | 171 |
pre-chordal neural plate | 1.90e-12 | 61 |
regional part of cerebral cortex | 2.90e-11 | 22 |
neocortex | 1.03e-10 | 20 |
cerebral cortex | 3.06e-10 | 25 |
pallium | 3.06e-10 | 25 |
organ system subdivision | 2.85e-09 | 223 |