FFCP PHASE1:Hg19::chr1:158224659..158224672,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1634 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-201bp_to_DQ891346,DQ894526_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_13_at_CD1A_5end | |||
|id=chr1:158224659..158224672,+ | |||
|ontology_enrichment_celltype=CL:0000840!4.11e-41!5;CL:0001029!4.11e-41!5;CL:0001014!7.33e-32!2;CL:0001016!7.33e-32!2;CL:0000990!1.40e-27!8;CL:0000451!1.20e-22!10;CL:0000453!2.23e-13!5 | |||
|ontology_enrichment_celltype_v019=CL:0001014;3.96e-66;2!CL:0001016;3.96e-66;2!CL:0000453;3.11e-27;5!CL:0000840;6.78e-23;5!CL:0000990;1.22e-15;8!CL:0000451;5.42e-13;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,3.96e-66,2;CL:0001016,3.96e-66,2;CL:0000453,3.11e-27,5;CL:0000840,6.78e-23,5;CL:0001029,6.78e-23,5;CL:0000990,1.22e-15,8;CL:0000451,5.42e-13,10 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.07e-17;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.03e-20!7;UBERON:0002370!1.21e-16!4;UBERON:0005058!1.21e-16!4;UBERON:0009113!1.21e-16!4;UBERON:0003295!1.21e-16!4;UBERON:0005562!1.21e-16!4;UBERON:0000974!1.54e-14!10;UBERON:0003351!2.02e-11!6;UBERON:0000341!7.49e-09!2;UBERON:0003408!3.33e-07!10;UBERON:0001042!3.33e-07!10;UBERON:0009145!3.33e-07!10;UBERON:0002390!7.48e-07!102;UBERON:0003061!7.48e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.41e-67;2!UBERON:0005058;7.41e-67;2!UBERON:0009113;7.41e-67;2!UBERON:0004177;1.59e-27;5!UBERON:0005057;1.59e-27;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.28e-34,4;UBERON:0005058,4.28e-34,4;UBERON:0009113,4.28e-34,4;UBERON:0003295,4.28e-34,4;UBERON:0005562,4.28e-34,4;UBERON:0003351,3.88e-23,6;UBERON:0004177,5.35e-20,7;UBERON:0005057,5.35e-20,7;UBERON:0000974,2.49e-14,10;UBERON:0003408,2.49e-14,10;UBERON:0001042,2.49e-14,10;UBERON:0009145,2.49e-14,10;UBERON:0006562,4.00e-13,11;UBERON:0009722,4.00e-13,11;UBERON:0007690,4.00e-13,11;UBERON:0008814,2.09e-08,18;UBERON:0001557,5.16e-08,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28055318027145,0,0,0,0,0.324621940274555,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.349843349309,3.0952078182318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,7.55690245081271,5.40050014373964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | |||
|short_description=p13@CD1A | |||
}} |
Revision as of 21:34, 10 January 2014
Short description: | p13@CD1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_13_at_CD1A_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -201bp_to_DQ891346, DQ894526_5end |
EntrezGene: | CD1A |
HGNC: | 1634 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 3.96e-66 | 2 |
immature CD1a-positive Langerhans cell | 3.96e-66 | 2 |
Langerhans cell | 3.11e-27 | 5 |
immature conventional dendritic cell | 6.78e-23 | 5 |
common dendritic progenitor | 6.78e-23 | 5 |
conventional dendritic cell | 1.22e-15 | 8 |
dendritic cell | 5.42e-13 | 10 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.28e-34 | 4 |
hemolymphoid system gland | 4.28e-34 | 4 |
thymic region | 4.28e-34 | 4 |
pharyngeal gland | 4.28e-34 | 4 |
thymus primordium | 4.28e-34 | 4 |
pharyngeal epithelium | 3.88e-23 | 6 |
hemopoietic organ | 5.35e-20 | 7 |
immune organ | 5.35e-20 | 7 |
neck | 2.49e-14 | 10 |
gland of gut | 2.49e-14 | 10 |
chordate pharynx | 2.49e-14 | 10 |
pharyngeal region of foregut | 2.49e-14 | 10 |
pharynx | 4.00e-13 | 11 |
entire pharyngeal arch endoderm | 4.00e-13 | 11 |
early pharyngeal endoderm | 4.00e-13 | 11 |
pharyngeal arch system | 2.09e-08 | 18 |
upper respiratory tract | 5.16e-08 | 19 |