FFCP PHASE1:Hg19::chr10:6622629..6622638,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=128bp_to_uc001ijl.2_5end | |||
|coexpression_cluster_id=C726 | |||
|description=CAGE_peak_4_at_uc001ijl.2_5end | |||
|id=chr10:6622629..6622638,+ | |||
|ontology_enrichment_celltype=CL:0000791!5.94e-25!18;CL:0000789!5.94e-25!18;CL:0002420!5.94e-25!18;CL:0002419!5.94e-25!18;CL:0000790!5.94e-25!18;CL:0000084!1.68e-23!25;CL:0000827!1.68e-23!25;CL:0000838!3.48e-17!52;CL:0000542!1.06e-16!53;CL:0000051!1.06e-16!53;CL:0000625!4.33e-15!11;CL:0000037!3.39e-12!172;CL:0000566!3.39e-12!172;CL:0000988!9.27e-11!182;CL:0002032!2.29e-10!165;CL:0000837!2.29e-10!165;CL:0000624!3.38e-10!6;CL:0002087!2.84e-08!119;CL:0002031!1.36e-07!124;CL:0000738!1.85e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000625;5.04e-28;11!CL:0000791;7.93e-22;18!CL:0000789;7.93e-22;18!CL:0002419;7.93e-22;18!CL:0000084;1.22e-19;25!CL:0000895;1.07e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,4.40e-28,11;CL:0000791,8.93e-22,18;CL:0000789,8.93e-22,18;CL:0002420,8.93e-22,18;CL:0002419,8.93e-22,18;CL:0000790,8.93e-22,18;CL:0000084,1.35e-19,25;CL:0000827,1.35e-19,25;CL:0000838,1.11e-08,52;CL:0000542,1.72e-08,53;CL:0000051,1.72e-08,53;CL:0000810,1.75e-07,1;CL:0000895,1.75e-07,1;CL:0002436,1.75e-07,1;CL:0002427,1.75e-07,1;CL:0002428,1.75e-07,1;CL:0002429,1.75e-07,1;CL:0002433,1.75e-07,1;CL:0002431,1.75e-07,1;CL:0002432,1.75e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;7.93e-22;18!CL:0002427;1.07e-07;1 | |||
|ontology_enrichment_disease=DOID:2531!3.58e-08!51;DOID:0060083!3.58e-08!51;DOID:1240!1.05e-07!39;DOID:1036!9.46e-07!8 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-08!115;UBERON:0000178!5.55e-08!15;UBERON:0000179!5.55e-08!15;UBERON:0000463!5.55e-08!15;UBERON:0002370!8.67e-08!4;UBERON:0005058!8.67e-08!4;UBERON:0009113!8.67e-08!4;UBERON:0003295!8.67e-08!4;UBERON:0005562!8.67e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.31e-14;2!UBERON:0005058;4.31e-14;2!UBERON:0009113;4.31e-14;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.39e-15,4;UBERON:0005058,4.39e-15,4;UBERON:0009113,4.39e-15,4;UBERON:0003295,4.39e-15,4;UBERON:0005562,4.39e-15,4;UBERON:0003351,3.12e-10,6;UBERON:0004177,7.72e-09,7;UBERON:0005057,7.72e-09,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502497330513487,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.526768169550154,0.393419540227666,0.393010762749165,0.411202997999018,2.34061093546949,0.977766799900771,1.4203434172042,0,1.89397776704795,0.883817722424512,0.886135578334485,1.62482318259009,3.20228299314188,1.56071217071854,1.80881695064044,1.93445012450094,0.289803085735052,2.22429844743091,2.1403266247177,3.1360657141493,1.92625882585863,1.14966148080576,2.06176467289578,1.77113784413652,0.95569624297229,4.55758417699493,1.90090408889675,1.6563263098555,2.04778577847069,1.24930726552346,1.65744076430812,1.64225599384209,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,0.121973706129595,0,0.116193942869518,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0.616339038092582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0.197030760201927,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0.476463550915578,0.822724546172388,0,1.08006287447623,0.79312517629427,0,0,0,0,0.28853842595289,0.569134746787313,0,0,0.383010740264733,0.846694330895531,0,1.40398589056729,0,0,0,0.338583555603207,0.1605880751037,0,0,0,0,0,0,0,0,0,0.270455678475983,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,6.13159789174419,0.470940769185074,0.332423363800313,0.225595660617181,0,0.167821586975843,0.189753732724185,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.121499113316049,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0,0,0,0,0.13223260174269,0,0,0,0.157204305099666,0.414239055347196,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.106691729694141,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0,0,0,0,0,0.829169439458779,0,0,0,1.80848947540817,2.04846557176331,0,0.0636471582781649,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p4@uc001ijl.2 | |||
}} |
Revision as of 01:36, 11 January 2014
Short description: | p4@uc001ijl.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_uc001ijl.2_5end |
Coexpression cluster: | C726_chronic_CD4_Hodgkin_CD8_thymus_CD19_blood |
Association with transcript: | 128bp_to_uc001ijl.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 4.40e-28 | 11 |
mature alpha-beta T cell | 8.93e-22 | 18 |
alpha-beta T cell | 8.93e-22 | 18 |
immature T cell | 8.93e-22 | 18 |
mature T cell | 8.93e-22 | 18 |
immature alpha-beta T cell | 8.93e-22 | 18 |
T cell | 1.35e-19 | 25 |
pro-T cell | 1.35e-19 | 25 |
lymphoid lineage restricted progenitor cell | 1.11e-08 | 52 |
lymphocyte | 1.72e-08 | 53 |
common lymphoid progenitor | 1.72e-08 | 53 |
CD4-positive, alpha-beta thymocyte | 1.75e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.75e-07 | 1 |
mature CD4 single-positive thymocyte | 1.75e-07 | 1 |
resting double-positive thymocyte | 1.75e-07 | 1 |
double-positive blast | 1.75e-07 | 1 |
CD69-positive double-positive thymocyte | 1.75e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.75e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.75e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.75e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.39e-15 | 4 |
hemolymphoid system gland | 4.39e-15 | 4 |
thymic region | 4.39e-15 | 4 |
pharyngeal gland | 4.39e-15 | 4 |
thymus primordium | 4.39e-15 | 4 |
pharyngeal epithelium | 3.12e-10 | 6 |
hemopoietic organ | 7.72e-09 | 7 |
immune organ | 7.72e-09 | 7 |