FFCP PHASE1:Hg19::chr11:18477369..18477415,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=160287 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28335 | |||
|TSSclassifier=strong | |||
|UniProt=Q6ZMR3 | |||
|association_with_transcript=0bp_to_ENST00000396213,NM_001144071,NM_144972,uc001mop.1,uc001moq.2_5end | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_1_at_LDHAL6A_5end | |||
|id=chr11:18477369..18477415,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.80e-10;5!CL:0000650;9.53e-07;2!CL:1000500;9.53e-07;2!CL:1000618;9.53e-07;2!CL:1001318;9.53e-07;2!CL:0002173;9.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000650,9.54e-07,2;CL:1000500,9.54e-07,2;CL:1000618,9.54e-07,2;CL:1001318,9.54e-07,2;CL:0002173,9.54e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.77e-15;3!UBERON:0009117;1.14e-10;10!UBERON:0005564;1.14e-10;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;6.84e-11;10!DOID:169;1.34e-08;6!DOID:3095;1.65e-08;22!DOID:2994;1.65e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.85e-11,10;DOID:169,1.34e-08,6;DOID:3095,1.61e-08,22;DOID:2994,1.61e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!9.71e-24!57;UBERON:0005068!9.71e-24!57;UBERON:0006241!9.71e-24!57;UBERON:0007135!9.71e-24!57;UBERON:0001893!4.85e-23!34;UBERON:0000073!7.78e-23!94;UBERON:0001016!7.78e-23!94;UBERON:0002616!1.22e-22!59;UBERON:0001869!1.33e-22!32;UBERON:0000956!3.30e-22!25;UBERON:0000203!3.30e-22!25;UBERON:0005743!1.10e-21!86;UBERON:0001017!1.18e-21!82;UBERON:0002791!1.77e-21!33;UBERON:0000955!9.09e-21!69;UBERON:0006238!9.09e-21!69;UBERON:0002020!1.27e-20!34;UBERON:0003528!1.27e-20!34;UBERON:0002619!2.71e-20!22;UBERON:0002346!2.73e-20!90;UBERON:0003075!3.73e-20!86;UBERON:0007284!3.73e-20!86;UBERON:0002780!3.76e-20!41;UBERON:0001890!3.76e-20!41;UBERON:0006240!3.76e-20!41;UBERON:0001950!4.18e-20!20;UBERON:0003080!1.61e-19!42;UBERON:0003056!3.44e-18!61;UBERON:0007023!5.71e-17!115;UBERON:0000033!8.20e-13!123;UBERON:0000153!1.22e-12!129;UBERON:0007811!1.22e-12!129;UBERON:0000200!2.12e-11!6;UBERON:0000924!4.75e-11!173;UBERON:0006601!4.75e-11!173;UBERON:0004121!9.64e-11!169;UBERON:0001871!4.99e-08!7;UBERON:0000064!5.54e-08!219;UBERON:0004733!2.73e-07!12;UBERON:0002028!2.73e-07!12;UBERON:0007277!2.73e-07!12;UBERON:0001872!7.59e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.41e-13;8!UBERON:0000013;3.80e-10;5!UBERON:0002410;3.80e-10;5!UBERON:0003135;9.54e-10;11!UBERON:0002037;3.37e-08;6!UBERON:0001905;9.53e-07;2!UBERON:0002757;9.53e-07;2!UBERON:0010134;9.53e-07;2!UBERON:0003567;9.53e-07;2!UBERON:0003838;9.53e-07;2!UBERON:0003586;9.53e-07;2!UBERON:0005169;9.53e-07;2!UBERON:0005408;9.53e-07;2!UBERON:0002321;9.53e-07;2!UBERON:0005215;9.53e-07;2!UBERON:0002303;9.53e-07;2!UBERON:0001899;9.53e-07;2!UBERON:0002319;9.53e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.34e-13,8;UBERON:0000013,3.80e-10,5;UBERON:0002410,3.80e-10,5;UBERON:0003135,9.40e-10,11;UBERON:0002037,4.19e-08,6;UBERON:0006215,4.19e-08,6;UBERON:0001905,8.06e-07,2;UBERON:0002757,8.06e-07,2;UBERON:0010134,8.06e-07,2;UBERON:0005408,8.06e-07,2;UBERON:0001899,8.06e-07,2;UBERON:0003567,9.54e-07,2;UBERON:0003838,9.54e-07,2;UBERON:0003586,9.54e-07,2;UBERON:0005169,9.54e-07,2;UBERON:0002321,9.54e-07,2;UBERON:0005215,9.54e-07,2;UBERON:0002303,9.54e-07,2;UBERON:0002319,9.54e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0,1.58030450865046,0,0,0,0,0,0.946895611469467,0,0.111410456885174,0.589211814949674,0.443067789167242,0,0.128091319725675,0,0,0,0,0.14828656316206,0.802622484269139,0,0,0.383220493601921,0,0,0,1.30216690771284,0,0.451725357233318,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.087834785693126,1.17881167947941,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0.34779121492523,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0.773288812777695,0.670065061337395,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0.451199612907412,0.385076685522074,0,0,0.527758144464379,0,0,0,0,1.35473218771926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45792611446766,1.78940886313933,3.17013369252626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,1.10579259931225,1.18219047581419,0.219385397153973,0,0,0.0769502585037971,0,0.23056390438806,0,0,0.31900115973192,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.728994679896296,0,0,0.314727528809989,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0.1251909307065,0,0.443716206147409,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.389720617678777,0,0.490696182767533,0.655219697692825,0,0,0,0,0,0,0,0,0,16.1146907842601,0,0,7.31704575886493,0,4.88922316233871,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0.205116364240755,0,0.484100767249525,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0.810451015420736,0,0.413373593002368,0.317079050969534,1.64092442705466,0,0,0,0,0,1.68141861109412,0,0,0,0,0,0.951576261675644,0.394636641377094,0,0,0,0,0,0,0,0,0.857718530119876,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23248399421302,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.407948941145488,0,0,0,0,0,0,0,0,0,0,0,2.75778293221613,2.65225443763838,2.41167717140561,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LDHAL6A | |||
}} |
Revision as of 06:52, 11 January 2014
Short description: | p1@LDHAL6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LDHAL6A_5end |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | 0bp_to_ENST00000396213, NM_001144071, NM_144972, uc001mop.1, uc001moq.2_5end |
EntrezGene: | LDHAL6A |
HGNC: | 28335 |
UniProt: | Q6ZMR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 9.54e-07 | 2 |
kidney interstitial cell | 9.54e-07 | 2 |
juxtaglomerular complex cell | 9.54e-07 | 2 |
renal interstitial pericyte | 9.54e-07 | 2 |
extraglomerular mesangial cell | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 3.34e-13 | 8 |
sympathetic nervous system | 3.80e-10 | 5 |
autonomic nervous system | 3.80e-10 | 5 |
male reproductive organ | 9.40e-10 | 11 |
cerebellum | 4.19e-08 | 6 |
rhombic lip | 4.19e-08 | 6 |
pineal body | 8.06e-07 | 2 |
regional part of epithalamus | 8.06e-07 | 2 |
secretory circumventricular organ | 8.06e-07 | 2 |
circumventricular organ | 8.06e-07 | 2 |
epithalamus | 8.06e-07 | 2 |
abdomen connective tissue | 9.54e-07 | 2 |
abdominal segment connective tissue | 9.54e-07 | 2 |
trunk connective tissue | 9.54e-07 | 2 |
interstitial tissue | 9.54e-07 | 2 |
extraglomerular mesangium | 9.54e-07 | 2 |
kidney interstitium | 9.54e-07 | 2 |
juxtaglomerular apparatus | 9.54e-07 | 2 |
mesangium | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.85e-11 | 10 |
neuroendocrine tumor | 1.34e-08 | 6 |
germ cell and embryonal cancer | 1.61e-08 | 22 |
germ cell cancer | 1.61e-08 | 22 |