FFCP PHASE1:Hg19::chr12:6299583..6299590,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_at_chr12:6299583..6299590,- | |||
|id=chr12:6299583..6299590,- | |||
|ontology_enrichment_celltype=CL:0000037!6.49e-09!172;CL:0000566!6.49e-09!172;CL:0000988!1.64e-08!182;CL:0002032!2.31e-08!165;CL:0000837!2.31e-08!165;CL:0000039!1.11e-07!7;CL:0000586!1.11e-07!7;CL:0002150!5.54e-07!3;CL:0000861!5.54e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.53e-14;7!CL:0000586;2.53e-14;7!CL:0002127;1.07e-11;1!CL:0000911;1.07e-11;1!CL:0000814;1.07e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.11e-14,7;CL:0000586,2.11e-14,7;CL:0002127,9.61e-12,1;CL:0000914,9.61e-12,1;CL:0000911,9.61e-12,1;CL:0000814,9.61e-12,1;CL:0002042,9.61e-12,1;CL:0002039,9.61e-12,1;CL:0002040,9.61e-12,1;CL:0002041,9.61e-12,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.47e-17;10!UBERON:0005564;3.47e-17;10 | |||
|ontology_enrichment_disease=DOID:162!7.95e-13!235;DOID:14566!3.09e-12!239;DOID:2531!3.14e-12!51;DOID:0060083!3.14e-12!51;DOID:1036!8.43e-09!8;DOID:3095!1.39e-08!22;DOID:2994!1.39e-08!22;DOID:1240!1.64e-08!39;DOID:0060058!1.67e-08!10;DOID:0050687!7.48e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:9119;1.07e-11;1!DOID:3095;6.31e-08;22!DOID:2994;6.31e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:9119,1.07e-11,1;DOID:3095,5.35e-08,22;DOID:2994,5.35e-08,22;DOID:2531,5.98e-07,51;DOID:0060083,5.98e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.00e-09!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.10e-21;8!UBERON:0003135;1.20e-15;11!UBERON:0005795;1.07e-11;1!UBERON:0000991;2.69e-08;21!UBERON:0003101;6.31e-08;22!UBERON:0000079;6.31e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.21e-21,8;UBERON:0003135,1.24e-15,11;UBERON:0000991,2.74e-08,21;UBERON:0009196,2.74e-08,21;UBERON:0009117,2.74e-08,21;UBERON:0005564,2.74e-08,21;UBERON:0004176,6.43e-08,22;UBERON:0003101,6.43e-08,22;UBERON:0000079,6.43e-08,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,1.39440961044543,0,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0.411167888021826,0.619412741790207,0,0.256160706529101,0.709446689665756,0,0,1.35426486594342,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.502497330513487,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,3.57735936458013,0,0.371457501329565,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0.267899184852239,0,0.112611480483322,3.06633274931766,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0.224262168690721,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0.0711418433484141,0.159426272728822,0,0.383010740264733,0,0,0,0.228234679033192,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,1.33228787199128,0,0.37428108081644,0,0.121360521749513,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538545866458633,0,0,0,0,0,0,0.332423363800313,1.1279783030859,0.784250137270958,0.839107934879214,0.189753732724185,5.40384368533288,0,0,0.282706142867882,0,0,0,0,2.6686901581256,0,0,0.067401132980677,0,0,0.364909578431332,0,0,0,0,0,0,24.6530407839768,0.103688191397247,0,0,0,0,0,0,0,0.391969589657511,0,0,0.171986032471617,0.870806981601766,0.877071805034227,0.492692742319255,0,0,0,0,0,0,0.195551382734803,0,0,0,0.144090417154106,0,0,0.14405479798815,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,1.16495949527454,0,0.0824158583811665,0.0674035438541849,0,0.169346664131569,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0.197611631897944,1.09613338542806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0.567515953566836,0,0.139879507719444,0,0.127894371303652,0,0,0,0.33946505990805,0,0.123935764259002,0,0,0.394308725006267,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0.345701962667338,0,0,0.0657727735628491,0,0.667388411352415,0,0,0,0,0,0,0,0,0,2.43401581223611,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0.121917924982269,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,1.63898357945543,0,1.52983244612973,0.801652215796681,7.81106646046182,4.011320628678,1.06090177505535,0.803892390468535,0,0,0,0,0,0.248298857183432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22068853494722,0,0,0 | |||
|short_description=p@chr12:6299583..6299590,- | |||
}} |
Revision as of 11:37, 11 January 2014
Short description: | p@chr12:6299583..6299590, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:6299583..6299590, - |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.11e-14 | 7 |
germ cell | 2.11e-14 | 7 |
innate effector T cell | 9.61e-12 | 1 |
immature NK T cell | 9.61e-12 | 1 |
effector T cell | 9.61e-12 | 1 |
mature NK T cell | 9.61e-12 | 1 |
immature NK T cell stage IV | 9.61e-12 | 1 |
immature NK T cell stage I | 9.61e-12 | 1 |
immature NK T cell stage II | 9.61e-12 | 1 |
immature NK T cell stage III | 9.61e-12 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 2.21e-21 | 8 |
male reproductive organ | 1.24e-15 | 11 |
gonad | 2.74e-08 | 21 |
indifferent external genitalia | 2.74e-08 | 21 |
indifferent gonad | 2.74e-08 | 21 |
gonad primordium | 2.74e-08 | 21 |
external genitalia | 6.43e-08 | 22 |
male organism | 6.43e-08 | 22 |
male reproductive system | 6.43e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
acute myeloid leukemia | 1.07e-11 | 1 |
germ cell and embryonal cancer | 5.35e-08 | 22 |
germ cell cancer | 5.35e-08 | 22 |
hematologic cancer | 5.98e-07 | 51 |
immune system cancer | 5.98e-07 | 51 |