FFCP PHASE1:Hg19::chr12:54402745..54402788,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3224 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5129 | |||
|TSSclassifier=strong | |||
|UniProt=P31273 | |||
|association_with_transcript=-43bp_to_ENST00000040584_5end | |||
|coexpression_cluster_id=C1362 | |||
|description=CAGE_peak_1_at_HOXC8_5end | |||
|id=chr12:54402745..54402788,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.63e-17!180;CL:0000136!3.00e-12!15;CL:0002620!6.31e-11!23;CL:0002334!7.90e-11!12;CL:0000057!4.00e-10!75;CL:0002570!1.50e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.72e-14;23!CL:0002334;2.18e-13;12!CL:0000136;6.25e-13;13!CL:0002570;3.02e-09;8!CL:0000188;2.25e-07;9!CL:0002320;4.47e-07;188!CL:0000680;6.44e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.08e-15,15;CL:0000057,1.47e-14,76;CL:0002620,4.15e-14,23;CL:0002334,2.03e-13,12;CL:0002570,3.14e-09,8;CL:0000188,1.62e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.43e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.63e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002199!9.38e-13!45;UBERON:0002416!9.38e-13!45;UBERON:0001013!1.80e-11!14;UBERON:0002097!7.39e-10!40;UBERON:0003886!7.05e-08!63;UBERON:0002100!2.56e-07!216;UBERON:0004458!5.76e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.15e-14;14!UBERON:0002097;4.10e-10;41!UBERON:0002199;4.43e-10;46!UBERON:0002416;4.43e-10;46!UBERON:0001134;8.63e-10;16!UBERON:0002036;8.63e-10;16!UBERON:0004457;4.31e-09;9!UBERON:0000042;4.31e-09;9!UBERON:0003688;6.74e-08;6!UBERON:0002358;6.74e-08;6!UBERON:0003684;6.74e-08;6!UBERON:0001178;6.74e-08;6!UBERON:0003102;7.69e-08;50!UBERON:0004905;1.42e-07;8!UBERON:0000982;1.42e-07;8!UBERON:0004770;1.42e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.49e-16,46;UBERON:0002416,1.49e-16,46;UBERON:0001013,3.06e-14,14;UBERON:0002097,8.24e-13,41;UBERON:0003688,6.72e-08,6;UBERON:0002358,6.72e-08,6;UBERON:0003684,6.72e-08,6;UBERON:0001178,6.72e-08,6;UBERON:0004905,9.76e-08,8;UBERON:0000982,9.76e-08,8;UBERON:0004770,9.76e-08,8;UBERON:0002384,6.13e-07,371 | |||
|phase1_expression=53.2317651262731,40.8932000631778,20.7202974021078,29.0212565224078,14.3027550216732,21.8084631025092,15.1979926900986,8.84407822797563,8.61912573059467,0.245733936501509,0,0.218441372130172,0.527533956456907,12.2528689430446,9.61052389610956,0,0.602694528023977,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2529523714611,10.0267582127178,2.31754430337318,3.9764297352555,1.94653948121054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0.949265659568129,0.183201743930407,0,0,0,9.44246708221105,1.13967460498122,2.51577443545116,0.286836620748814,1.41867352879343,0.560677600142307,0,0,0,0,0,0,0,0,0,0,11.3580997219369,8.22041490506354,9.55050371771976,10.8147121160731,0,0,0,0,0,48.2385521827154,28.0261075308333,0,0,0,0,0,0,0.113432183160021,6.81680615617675,11.7456563850212,5.51022943014861,3.90118424909723,6.49230934202165,13.912589162464,18.4255687768274,17.8902912175742,27.3797984502968,7.06814567883521,15.4643829719063,0,4.61512470271599,6.54888638479662,1.01736355386293,0,0,0,0,0,0.116193942869518,0,0,0.72995471815166,0,0,0,12.0735661288315,15.1594691150613,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0.737930631258681,0,1.09750285408626,2.24803506515239,0.502644862058154,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,4.47792613514241,4.65014301622339,1.53353071666084,0,0,0,0,0.12624243342638,0.380987365753014,0.763976851116555,1.17217447210047,3.4214489204541,1.43958489784653,0.300343057843917,2.00078502841405,0,0,0,18.8736705006356,35.7656445851882,5.071816515336,0,1.04007436911366,3.85811061393213,12.766421882095,3.99633268524149,0.285955987316295,41.7818636151411,18.1112874091769,8.79487697593085,0,7.12756685640086,0.904318131178758,5.22920075160176,3.79897366491817,0,0,0,0,0,5.70547620162874,15.7811624267661,2.87666851570537,20.4129498093481,0,0,0,0,0,0,0,0,0,0,0,0,17.1768088406796,17.5059682370887,10.5793359242897,0.207970861530807,0,0.157702415033935,0,3.31040709700491,4.5481500811197,0,7.3064815838898,2.21243002250044,0.260650843404249,0,0,0,0,0,0,0,0.30239029332968,71.9512642674453,49.4147553987561,57.8159794532132,17.8113417465424,51.682432155737,20.4284479852382,23.7468906311986,11.8741464228045,7.63515418846446,17.657338542969,3.63478100428535,11.8534586029158,1.32945394550784,0.200506470303285,0,0,0,0.131124414959424,1.35359883872224,0.924184045252977,1.56869953835371,7.30696123266303,1.89992932007176,0,0,2.80690690932781,0,5.96082162596476,4.51520796469368,2.54876273045038,0,2.23874754722178,0,0,0,0,0,0.103041011647722,0.366277859273374,0.330037999682352,4.01985876597321,3.90036147621913,8.03419649220798,5.02687735119034,2.15668063960502,1.99554777143968,6.61615547925747,4.83391101907231,4.93056759308377,9.2044757609389,4.80772992492382,0,0,0,0,0.464845549297286,0.31481234683064,0.6970372701606,5.23657086299351,0.532306030317022,0,0,0,0,0.316379424718726,0,0,0.42793898803392,0,0,0,0.274537029736055,0,1.41527737101321,0,0,0,12.4293879711955,11.6215161432431,0,0,1.13008116620243,1.65409603063837,0,0.438450885253763,0,0.655894752046633,6.89895281673194,2.16876448669825,1.69017361519345,24.8101639313009,28.7869690168445,5.7067368237,0,1.89996871767898,6.25660296623814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45695363593188,0.962479855263359,0,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0.166849141711909,0.390776190804081,0,0,0,0,0,0,1.46508179271894,3.76217617423492,0,0,0,0,0,0,0,0,0,0.422250816255987,0.398495976502139,0.276283915531148,0,1.32949287252801,0,0,1.52776196950456,0,0,0.197286811273867,0,14.4478087188028,0,0,0,0.260427761085233,0,2.89999830173917,0,0,0,0,1.45802306691627,0.694499979733169,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0.432777279484182,0,0.0884575645033392,0,0.593042257361244,0.494255755786011,1.35748534357092,0,0,0,0,0,1.21390189767046,0,0,0,0,0.150323419414493,1.45163467956146,1.32930774541437,6.28884716163448,3.45326210247948,3.58417289318877,0,0,0,0,0,1.7472666824203,5.1595809741485,0,0,0.0821154570532092,0,0,0,1.78154502040776,1.19228767021794,0,0,0.240476460754601,0,0.599428828746391,0,6.07043959679353,0,0,5.46711156487903,0.235694034616795,0.271808412147228,0,2.95794831145333,0,0,0,0,1.28929632425987,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,5.76479813667846,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,1.49730843868477,1.15400093896996,0,0.35857467866569,0,0,0,15.256112259285,0,0,0.979762080328227,0,0,10.7344453724816,8.72503104704968,0,0,0,0,0.513260513652988,0,0,0,0,0.496166021811951,0,0,0,3.80812462358632,5.2644877744767,8.57767614937692,1.96723578425883,2.35581144375351,0,0,0,0,0.110929051536852,0,1.38348634936231,0,5.61101734904097,1.4273266677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| |||
|short_description=p1@HOXC8 | |||
}} |
Revision as of 13:47, 11 January 2014
Short description: | p1@HOXC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXC8_5end |
Coexpression cluster: | C1362_Preadipocyte_Adipocyte_Fibroblast_Mesenchymal_mesenchymal_Myoblast_Smooth |
Association with transcript: | -43bp_to_ENST00000040584_5end |
EntrezGene: | HOXC8 |
HGNC: | 5129 |
UniProt: | P31273 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 3.08e-15 | 15 |
fibroblast | 1.47e-14 | 76 |
skin fibroblast | 4.15e-14 | 23 |
preadipocyte | 2.03e-13 | 12 |
mesenchymal stem cell of adipose | 3.14e-09 | 8 |
cell of skeletal muscle | 1.62e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
integument | 1.49e-16 | 46 |
integumental system | 1.49e-16 | 46 |
adipose tissue | 3.06e-14 | 14 |
skin of body | 8.24e-13 | 41 |
omentum | 6.72e-08 | 6 |
peritoneum | 6.72e-08 | 6 |
abdominal cavity | 6.72e-08 | 6 |
visceral peritoneum | 6.72e-08 | 6 |
articulation | 9.76e-08 | 8 |
skeletal joint | 9.76e-08 | 8 |
articular system | 9.76e-08 | 8 |
connective tissue | 6.13e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.63e-08 | 14 |