FFCP PHASE1:Hg19::chr15:72501140..72501164,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5315 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9021 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=67bp_to_uc002att.1_5end | |||
|coexpression_cluster_id=C1409 | |||
|description=CAGE_peak_2_at_PKM2_5end | |||
|id=chr15:72501140..72501164,- | |||
|ontology_enrichment_celltype=CL:0000548!1.78e-27!679;CL:0000004!1.78e-27!679;CL:0000255!1.78e-27!679;CL:0000012!2.42e-26!682;CL:0000144!3.02e-22!625;CL:0002371!7.21e-20!591;CL:0000003!2.16e-19!722;CL:0000063!2.32e-14!578;CL:0000220!3.15e-11!246;CL:0000055!5.43e-11!180;CL:0002321!6.70e-11!248;CL:0000222!1.67e-08!119;CL:0000066!4.11e-08!254;CL:0000192!1.65e-07!42;CL:0000514!1.65e-07!42;CL:0000723!2.49e-07!436;CL:0000359!6.49e-07!32;CL:0000183!6.92e-07!59;CL:0000034!8.24e-07!444;CL:0000048!9.11e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.61e-08;33!CL:0002057;6.61e-08;33!CL:0000473;1.46e-07;39!CL:0000234;1.46e-07;39!CL:0000359;8.20e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.36e-11,250;CL:0000222,1.04e-08,121;CL:0000066,6.11e-08,253;CL:0000723,2.04e-07,433;CL:0000192,2.24e-07,43;CL:0000514,2.24e-07,43;CL:0000359,5.78e-07,32;CL:0000034,6.48e-07,441;CL:0000048,7.58e-07,427;CL:0000680,9.66e-07,58;CL:0000056,9.66e-07,58;CL:0000355,9.66e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!4.98e-09!82;UBERON:0000914!5.48e-09!83;UBERON:0002329!5.48e-09!83;UBERON:0003077!5.48e-09!83;UBERON:0003059!5.48e-09!83;UBERON:0007282!5.48e-09!83;UBERON:0009618!5.48e-09!83;UBERON:0007285!5.48e-09!83;UBERON:0000926!1.86e-08!448;UBERON:0004120!1.86e-08!448;UBERON:0006603!1.86e-08!448;UBERON:0004290!3.39e-08!70;UBERON:0002204!8.82e-08!167;UBERON:0001637!9.56e-08!42;UBERON:0003509!9.56e-08!42;UBERON:0004572!9.56e-08!42;UBERON:0003081!2.08e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.40e-09,78;UBERON:0000926,2.31e-09,315;UBERON:0004120,2.31e-09,315;UBERON:0006603,2.31e-09,315;UBERON:0000486,5.03e-09,83;UBERON:0002329,3.53e-08,71;UBERON:0003059,3.53e-08,71;UBERON:0007282,3.53e-08,71;UBERON:0004290,3.53e-08,71;UBERON:0009618,3.53e-08,71;UBERON:0007524,5.50e-08,73;UBERON:0003077,5.57e-08,72;UBERON:0007285,5.57e-08,72;UBERON:0001637,8.37e-08,42;UBERON:0003509,8.37e-08,42;UBERON:0004572,8.37e-08,42;UBERON:0002204,1.33e-07,167 | |||
|phase1_expression=2.90685406832891,13.4883330051319,2.96004248601539,5.00366491765652,3.12872766099101,5.23403114460221,7.59899634504932,4.42203911398782,0.522371256399677,4.91467873003018,18.1428303672831,4.80571018686379,8.70431028153897,5.321953177282,6.2965501388304,14.1188280754873,6.02694528023977,4.38186054232424,12.6862527685532,5.41732655537867,10.6080359447012,7.52291331547411,1.43117993565528,9.99183303032055,4.89616294419731,8.17623441503079,4.76183418809685,4.80135766013443,0.393364276848904,0.383829398097213,0.309632246632152,8.27479102031034,19.5783847205863,15.5296684270051,1.39440961044543,1.9903692548239,0.293600439334847,0,2.80762226458198,1.73608696572681,0.895661896959697,0.32389366601898,0,8.28769961043519,7.55751887377619,6.0646015296954,12.551167992907,9.04569353648017,9.60089749774821,7.19230980805376,8.19714260893122,4.25668013799453,4.82643953031266,5.16387746867061,6.77132432971709,13.1769637679823,12.5536829026609,6.96642801779762,13.4676912643197,6.73950956859797,7.67204550958849,7.91643120448119,7.38015533200038,4.68847225585964,16.8321358404579,9.07816359505824,12.4564449799115,8.54245461872927,8.86520961314342,4.12658804939722,15.7403870684676,7.36555271975129,10.4432587855492,2.95757400836718,1.91343869968539,1.88692780957538,2.13424399178341,2.10247649978109,1.28580469357664,0.285012743741249,0.59675003159727,0.182664153764634,1.75996244461323,0.546138611262131,0,0.426730222566507,0,2.29900975981793,0,0,0.569212969109448,0.587237189370939,0.764546456250458,0,0,1.84368859342554,0.196709770113833,1.57204305099666,1.02800749499755,0.668745981562712,0.32592226663359,1.89379122293893,1.94826728407911,2.56244050835899,1.17842362989935,1.10766947291811,0.541607727530031,1.92136979588513,1.95089021339817,1.15106533222573,1.38175008892924,1.44901542867526,0.741432815810302,0.267540828089713,0,2.03956816855619,0.766440987203842,0.68725489096526,0.759059076058509,0.637130828648193,0.651083453856419,0,0.451725357233318,0.383959833463255,0,0.236777252044017,0,0.201606743224732,1.06976078313403,1.01377082717959,0,5.36560687762909,2.04580098949649,5.42158728576849,4.51204119572301,10.1392563272577,0.795285947051099,6.8128881842369,3.59232305223458,8.42571710357743,5.70926107005319,0.654895377488563,4.37154345951051,9.26961106961073,1.29818957461873,2.26368658489047,9.97184703891489,0,0,0.371457501329565,2.38514888840046,4.30117297553062,1.38856200643038,2.26123176769604,5.03399323451887,11.2798397195428,7.9418087283988,3.35941786920128,1.42306505074684,1.00416183829401,2.41697590265488,6.84244895146661,3.66093086322254,1.10298924103761,12.1521292182264,2.41109266367015,1.12264686313085,1.23872628531654,1.53316637465883,2.84779697870439,3.66403487860815,0,0,6.54141078213801,5.96366342034382,5.82500353657067,7.81214166797991,3.72887606973458,9.22137793715728,7.8494864019923,10.6748995729705,14.0600502597781,1.8672662123986,3.3677668017422,4.7403951902903,2.27036141467397,2.30470369792,1.17160715916898,4.99456122928513,2.2818872861778,7.77133138869366,6.57633192405083,4.37056949793955,4.9157782345787,3.26646674007829,13.1432719523592,2.6864703105699,1.18800285728205,7.41800787835671,3.64064544775211,7.90479955997862,4.20840284885166,5.88057043398232,1.10825646193673,2.63386572528503,17.7762921563431,3.75595147266492,3.85669422744072,8.07253360599879,3.84403299873421,3.81477422087211,5.40163972951924,6.80146692973697,13.3973080823727,5.95573940261087,6.58227695740938,5.74878330451072,8.83518209854401,4.51044503347267,2.7479829659198,9.9402685904652,7.65715946530066,4.91725717700414,6.57086900755209,5.18217629122586,3.72845974005705,2.31750041646231,0.927708378250397,4.06678800043314,4.14644220061482,6.56034212276634,1.09493207722749,20.3384392028761,23.7999147131368,11.0507937081984,4.17931135228781,9.38443326170461,11.1208392037453,14.6668680367948,12.0505514941741,14.7793923461408,10.0224544282507,9.01628352622167,12.6741429670555,6.86775127938711,9.61867892365976,1.4763109092493,2.80483547606892,2.057870056657,2.94017422771084,0,0,0.590789906681404,2.20731549707325,2.58275720940538,4.97546649865724,9.32877425973317,5.62008766288098,8.74602059981188,4.90718759340207,0.977424915930974,3.11980435583874,15.8764476227801,2.20267769452646,0.70445216541493,2.88732895522148,4.1668696131895,3.99533719692656,11.0628615714299,8.58486162094873,1.23108503043699,5.6161023633417,6.39113997841531,3.74935335947108,10.4148919483293,10.7749073904214,4.56748465784526,3.48760726216754,22.6195780707475,4.92663237895944,1.58487181223807,0.621984346622316,0,0.88369703398466,1.39695367442772,2.67391897890794,2.34434894420094,6.84289784090821,3.59896224461632,4.80548892550268,1.71495859578347,1.90622843387113,3.92364061949952,4.2536205776151,4.91232519879556,3.57656445851882,10.988935783228,2.6593811658487,8.32059495290929,3.60090323966999,7.09245660116391,10.1240428026118,3.57444984145369,2.71310802695722,9.87888404136923,1.62868092146868,2.13235169245527,4.75171123760058,7.83742380354924,12.2014684204041,10.997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| |||
|short_description=p2@PKM2 | |||
}} |
Revision as of 00:24, 12 January 2014
Short description: | p2@PKM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PKM2_5end |
Coexpression cluster: | C1409_Smooth_Bronchial_Hair_Fibroblast_Alveolar_Mammary_leiomyoma |
Association with transcript: | 67bp_to_uc002att.1_5end |
EntrezGene: | PKM2 |
HGNC: | 9021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.36e-11 | 250 |
mesodermal cell | 1.04e-08 | 121 |
epithelial cell | 6.11e-08 | 253 |
somatic stem cell | 2.04e-07 | 433 |
smooth muscle cell | 2.24e-07 | 43 |
smooth muscle myoblast | 2.24e-07 | 43 |
vascular associated smooth muscle cell | 5.78e-07 | 32 |
stem cell | 6.48e-07 | 441 |
multi fate stem cell | 7.58e-07 | 427 |
muscle precursor cell | 9.66e-07 | 58 |
myoblast | 9.66e-07 | 58 |
multi-potent skeletal muscle stem cell | 9.66e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.40e-09 | 78 |
mesoderm | 2.31e-09 | 315 |
mesoderm-derived structure | 2.31e-09 | 315 |
presumptive mesoderm | 2.31e-09 | 315 |
multilaminar epithelium | 5.03e-09 | 83 |
somite | 3.53e-08 | 71 |
presomitic mesoderm | 3.53e-08 | 71 |
presumptive segmental plate | 3.53e-08 | 71 |
dermomyotome | 3.53e-08 | 71 |
trunk paraxial mesoderm | 3.53e-08 | 71 |
dense mesenchyme tissue | 5.50e-08 | 73 |
paraxial mesoderm | 5.57e-08 | 72 |
presumptive paraxial mesoderm | 5.57e-08 | 72 |
artery | 8.37e-08 | 42 |
arterial blood vessel | 8.37e-08 | 42 |
arterial system | 8.37e-08 | 42 |
musculoskeletal system | 1.33e-07 | 167 |