FFCP PHASE1:Hg19::chr16:2479428..2479470,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=899 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1591 | |||
|TSSclassifier=strong | |||
|UniProt=P41002 | |||
|association_with_transcript=8bp_to_ENST00000397066_5end | |||
|coexpression_cluster_id=C281 | |||
|description=CAGE_peak_1_at_CCNF_5end | |||
|id=chr16:2479428..2479470,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.79e-15!254;CL:0000548!6.26e-11!679;CL:0000004!6.26e-11!679;CL:0000255!6.26e-11!679;CL:0002321!1.27e-10!248;CL:0000012!1.64e-10!682;CL:0000220!4.86e-10!246;CL:0000333!2.99e-08!41;CL:0000003!1.06e-07!722;CL:0000055!1.54e-07!180;CL:0000133!5.61e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.14e-07;15!CL:1000497;6.98e-07;17!CL:0002518;6.98e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.91e-15,253;CL:0002321,1.13e-10,250;CL:0000333,3.06e-08,41;CL:1000449,4.17e-07,15;CL:0000115,5.36e-07,36;CL:0000213,5.52e-07,58;CL:0000215,5.52e-07,58;CL:0000133,6.63e-07,59;CL:1000497,9.67e-07,17;CL:0002518,9.67e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.33e-21!235;DOID:14566!2.85e-20!239;DOID:2531!2.51e-16!51;DOID:0060083!2.51e-16!51;DOID:1240!1.20e-12!39;DOID:0050686!1.46e-12!137;DOID:8692!6.22e-09!31;DOID:0050687!4.18e-08!143;DOID:305!8.79e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.69e-10;39!DOID:2531;6.27e-10;51!DOID:0060083;6.27e-10;51!DOID:8692;7.48e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.08e-21,235;DOID:14566,2.81e-20,239;DOID:2531,1.48e-16,51;DOID:0060083,1.48e-16,51;DOID:1240,7.55e-13,39;DOID:0050686,1.39e-12,137;DOID:8692,4.27e-09,31;DOID:0050687,4.44e-08,143;DOID:305,1.21e-07,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.14e-07;15!UBERON:0004819;3.14e-07;15!UBERON:0001285;3.14e-07;15!UBERON:0007684;3.14e-07;15!UBERON:0000353;7.86e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,4.17e-07,15;UBERON:0009773,4.17e-07,15;UBERON:0001231,4.17e-07,15;UBERON:0001285,4.17e-07,15;UBERON:0007684,4.17e-07,15;UBERON:0004208,4.17e-07,15;UBERON:0000353,9.71e-07,15 | |||
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| |||
|short_description=p1@CCNF | |||
}} |
Revision as of 01:53, 12 January 2014
Short description: | p1@CCNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCNF_5end |
Coexpression cluster: | C281_Hodgkin_Reticulocytes_chronic_NK_acute_retinoblastoma_small |
Association with transcript: | 8bp_to_ENST00000397066_5end |
EntrezGene: | CCNF |
HGNC: | 1591 |
UniProt: | P41002 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.91e-15 | 253 |
embryonic cell | 1.13e-10 | 250 |
migratory neural crest cell | 3.06e-08 | 41 |
epithelial cell of nephron | 4.17e-07 | 15 |
endothelial cell | 5.36e-07 | 36 |
lining cell | 5.52e-07 | 58 |
barrier cell | 5.52e-07 | 58 |
neurectodermal cell | 6.63e-07 | 59 |
kidney cell | 9.67e-07 | 17 |
kidney epithelial cell | 9.67e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 4.17e-07 | 15 |
renal tubule | 4.17e-07 | 15 |
nephron tubule | 4.17e-07 | 15 |
nephron | 4.17e-07 | 15 |
uriniferous tubule | 4.17e-07 | 15 |
nephrogenic mesenchyme | 4.17e-07 | 15 |
parenchyma | 9.71e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.08e-21 | 235 |
disease of cellular proliferation | 2.81e-20 | 239 |
hematologic cancer | 1.48e-16 | 51 |
immune system cancer | 1.48e-16 | 51 |
leukemia | 7.55e-13 | 39 |
organ system cancer | 1.39e-12 | 137 |
myeloid leukemia | 4.27e-09 | 31 |
cell type cancer | 4.44e-08 | 143 |
carcinoma | 1.21e-07 | 106 |