FFCP PHASE1:Hg19::chr17:8339189..8339285,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81565 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17620 | |||
|TSSclassifier=strong | |||
|UniProt=Q9GZM8 | |||
|association_with_transcript=0bp_to_ENST00000334527_5end | |||
|coexpression_cluster_id=C3704 | |||
|description=CAGE_peak_1_at_NDEL1_5end | |||
|id=chr17:8339189..8339285,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.89e-19!42;CL:0000766!4.40e-17!76;CL:0000860!2.23e-16!45;CL:0000738!1.71e-14!140;CL:0000557!3.17e-14!71;CL:0000839!9.39e-14!70;CL:0002009!2.16e-11!65;CL:0002031!5.94e-11!124;CL:0002194!2.12e-10!63;CL:0000576!2.12e-10!63;CL:0000040!2.12e-10!63;CL:0000559!2.12e-10!63;CL:0000134!1.60e-08!358;CL:0002087!4.02e-08!119;CL:0002320!1.52e-07!365;CL:0000048!2.46e-07!430;CL:0000094!7.05e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.92e-16;33!CL:0002057;4.92e-16;33!CL:0000473;7.58e-11;39!CL:0000234;7.58e-11;39!CL:0000576;1.25e-09;48!CL:0000766;2.98e-09;69!CL:0000094;6.99e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.89e-19,42;CL:0002057,1.89e-19,42;CL:0000766,9.24e-19,72;CL:0000473,3.76e-16,48;CL:0000234,3.76e-16,48;CL:0000557,9.34e-16,67;CL:0000738,2.00e-15,136;CL:0000839,2.93e-15,66;CL:0002009,9.17e-13,61;CL:0002031,8.89e-12,120;CL:0002194,1.05e-11,59;CL:0000576,1.05e-11,59;CL:0000040,1.05e-11,59;CL:0000559,1.05e-11,59;CL:0000134,3.04e-09,354;CL:0002087,8.45e-09,115;CL:0002320,3.27e-08,361;CL:0000048,6.06e-08,427;CL:0000723,2.79e-07,433;CL:0000094,7.05e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;3.02e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.36e-14!115;UBERON:0002390!2.78e-13!102;UBERON:0003061!2.78e-13!102;UBERON:0002371!6.34e-13!80;UBERON:0004765!1.78e-12!101;UBERON:0001434!1.78e-12!101;UBERON:0001474!2.33e-12!86;UBERON:0002193!3.68e-12!112;UBERON:0002204!3.94e-10!167;UBERON:0003081!1.47e-09!216;UBERON:0002405!4.34e-09!115;UBERON:0001049!4.05e-08!57;UBERON:0005068!4.05e-08!57;UBERON:0006241!4.05e-08!57;UBERON:0007135!4.05e-08!57;UBERON:0002384!3.09e-07!375;UBERON:0002780!4.22e-07!41;UBERON:0001890!4.22e-07!41;UBERON:0006240!4.22e-07!41;UBERON:0003080!6.42e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.21e-14,98;UBERON:0003061,2.21e-14,98;UBERON:0002371,3.24e-14,76;UBERON:0001474,1.54e-13,82;UBERON:0007023,2.05e-13,114;UBERON:0002193,4.03e-13,108;UBERON:0001434,2.47e-12,100;UBERON:0004765,2.65e-12,90;UBERON:0003081,2.79e-12,203;UBERON:0002405,5.65e-12,93;UBERON:0002204,6.17e-10,167;UBERON:0001049,2.77e-08,56;UBERON:0005068,2.77e-08,56;UBERON:0006241,2.77e-08,56;UBERON:0007135,2.77e-08,56;UBERON:0002384,7.00e-08,371;UBERON:0000073,7.30e-08,53;UBERON:0002616,7.30e-08,53;UBERON:0002780,4.22e-07,41;UBERON:0001890,4.22e-07,41;UBERON:0003080,4.22e-07,41;UBERON:0006240,4.22e-07,41 | |||
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| |||
|short_description=p1@NDEL1 | |||
}} |
Revision as of 13:49, 20 January 2014
Short description: | p1@NDEL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NDEL1_5end |
Coexpression cluster: | C3704_Eosinophils_Basophils_Mast_CD14_mature_immature_Neutrophils |
Association with transcript: | 0bp_to_ENST00000334527_5end |
EntrezGene: | NDEL1 |
HGNC: | 17620 |
UniProt: | Q9GZM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.89e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.89e-19 | 42 |
myeloid leukocyte | 9.24e-19 | 72 |
defensive cell | 3.76e-16 | 48 |
phagocyte | 3.76e-16 | 48 |
granulocyte monocyte progenitor cell | 9.34e-16 | 67 |
leukocyte | 2.00e-15 | 136 |
myeloid lineage restricted progenitor cell | 2.93e-15 | 66 |
macrophage dendritic cell progenitor | 9.17e-13 | 61 |
hematopoietic lineage restricted progenitor cell | 8.89e-12 | 120 |
monopoietic cell | 1.05e-11 | 59 |
monocyte | 1.05e-11 | 59 |
monoblast | 1.05e-11 | 59 |
promonocyte | 1.05e-11 | 59 |
mesenchymal cell | 3.04e-09 | 354 |
nongranular leukocyte | 8.45e-09 | 115 |
connective tissue cell | 3.27e-08 | 361 |
multi fate stem cell | 6.06e-08 | 427 |
somatic stem cell | 2.79e-07 | 433 |
granulocyte | 7.05e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.21e-14 | 98 |
blood island | 2.21e-14 | 98 |
bone marrow | 3.24e-14 | 76 |
bone element | 1.54e-13 | 82 |
adult organism | 2.05e-13 | 114 |
hemolymphoid system | 4.03e-13 | 108 |
skeletal system | 2.47e-12 | 100 |
skeletal element | 2.65e-12 | 90 |
lateral plate mesoderm | 2.79e-12 | 203 |
immune system | 5.65e-12 | 93 |
musculoskeletal system | 6.17e-10 | 167 |
neural tube | 2.77e-08 | 56 |
neural rod | 2.77e-08 | 56 |
future spinal cord | 2.77e-08 | 56 |
neural keel | 2.77e-08 | 56 |
connective tissue | 7.00e-08 | 371 |
regional part of nervous system | 7.30e-08 | 53 |
regional part of brain | 7.30e-08 | 53 |
regional part of forebrain | 4.22e-07 | 41 |
forebrain | 4.22e-07 | 41 |
anterior neural tube | 4.22e-07 | 41 |
future forebrain | 4.22e-07 | 41 |