FFCP PHASE1:Hg19::chr17:48265475..48265515,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=399bp_to_ENST00000486572_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_40_at_COL1A1_5end | |||
|id=chr17:48265475..48265515,- | |||
|ontology_enrichment_celltype=CL:0000055!1.36e-38!180;CL:0000057!1.64e-25!75;CL:0000183!7.61e-14!59;CL:0000680!2.18e-13!57;CL:0000056!2.18e-13!57;CL:0000355!2.18e-13!57;CL:0000187!1.46e-12!54;CL:0000048!1.76e-11!430;CL:0000723!7.39e-11!436;CL:0000393!8.34e-11!60;CL:0000211!8.34e-11!60;CL:0000034!3.32e-10!444;CL:0000192!3.48e-10!42;CL:0000514!3.48e-10!42;CL:0002371!3.69e-09!591;CL:0002334!1.93e-08!12;CL:0000144!2.13e-08!625;CL:0002620!2.25e-08!23;CL:0000327!1.80e-07!14;CL:0000499!1.95e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.07e-11;55!CL:0002334;7.54e-11;12!CL:0000499;2.00e-10;28!CL:0000327;1.51e-09;15!CL:0000057;1.86e-09;73!CL:0000048;2.15e-09;58!CL:0000723;2.77e-09;61!CL:0002320;4.94e-09;188!CL:0002570;1.21e-07;8!CL:0000034;2.52e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.64e-24,76;CL:0000048,8.96e-18,427;CL:0000723,6.61e-17,433;CL:0000034,8.56e-16,441;CL:0002320,1.05e-11,361;CL:0002334,1.27e-10,12;CL:0000499,1.29e-10,28;CL:0000134,2.35e-10,354;CL:0000680,8.20e-10,58;CL:0000056,8.20e-10,58;CL:0000355,8.20e-10,58;CL:0000327,1.19e-09,15;CL:0000187,1.79e-09,55;CL:0000219,2.84e-08,386;CL:0000192,4.13e-08,43;CL:0000514,4.13e-08,43;CL:0002570,1.06e-07,8;CL:0000393,1.19e-07,61;CL:0000211,1.19e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.37e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.84e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.80e-15!83;UBERON:0002329!4.80e-15!83;UBERON:0003077!4.80e-15!83;UBERON:0003059!4.80e-15!83;UBERON:0007282!4.80e-15!83;UBERON:0009618!4.80e-15!83;UBERON:0007285!4.80e-15!83;UBERON:0001134!1.33e-13!61;UBERON:0002036!1.33e-13!61;UBERON:0003082!1.33e-13!61;UBERON:0004290!2.58e-13!70;UBERON:0002385!3.50e-13!63;UBERON:0001015!3.50e-13!63;UBERON:0000383!3.50e-13!63;UBERON:0005256!3.21e-11!143;UBERON:0000486!7.55e-11!82;UBERON:0002100!2.60e-08!216;UBERON:0000475!1.44e-07!365;UBERON:0001013!8.69e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.27e-09;198!UBERON:0001013;9.86e-09;14!UBERON:0004457;9.49e-08;9!UBERON:0000042;9.49e-08;9!UBERON:0003688;1.19e-07;6!UBERON:0002358;1.19e-07;6!UBERON:0003684;1.19e-07;6!UBERON:0001178;1.19e-07;6!UBERON:0003104;1.68e-07;7!UBERON:0009142;1.68e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.10e-12,371;UBERON:0001134,1.92e-10,62;UBERON:0002036,1.92e-10,62;UBERON:0003082,1.92e-10,62;UBERON:0002385,8.71e-10,64;UBERON:0001015,8.71e-10,64;UBERON:0000383,8.71e-10,64;UBERON:0007524,6.25e-09,73;UBERON:0001013,7.19e-09,14;UBERON:0002329,1.29e-08,71;UBERON:0003059,1.29e-08,71;UBERON:0007282,1.29e-08,71;UBERON:0004290,1.29e-08,71;UBERON:0009618,1.29e-08,71;UBERON:0003077,2.35e-08,72;UBERON:0007285,2.35e-08,72;UBERON:0003688,1.27e-07,6;UBERON:0002358,1.27e-07,6;UBERON:0003684,1.27e-07,6;UBERON:0001178,1.27e-07,6;UBERON:0000486,1.32e-07,83;UBERON:0007503,1.58e-07,78 | |||
|phase1_expression=5.4503513781167,9.20632252731228,7.3296290129905,6.00439790118782,13.4088328328186,11.3404008133048,7.59899634504932,1.89515962028049,0,0,0.697801167972428,0.436882744260345,5.01157258634062,1.60896258848061,0.331397375727916,1.34465029290355,1.20538905604795,0,0,2.33930010345897,3.26401105990805,5.32873026512749,0.85870796139317,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,3.83587685530591,4.3372698286148,10.0267582127178,5.5041677205113,7.95285947051099,8.27279279514481,0.850813354476611,1.99556457716308,1.75669571386252,0.130979075497713,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9091585508596,5.06522046658319,1.19168262731897,21.512746556161,5.32002573297536,5.04609840128076,6.4049397437823,14.8000529050296,1.55605517699883,1.34710672069688,0.653847612453835,4.08665054641315,1.15235184896,1.17160715916898,0,0.570471821544449,0.448346041655403,0.23486899728753,0.161872944368132,0.421352420106746,0.816616685019573,0.737005903870608,1.03325781175765,9.50402285825643,17.8032189080561,6.37112953356618,6.46756327634615,0.336672227908132,0.625592599359821,0.831192346452549,3.95079858792754,6.43624371177941,6.15976041517047,2.60894021268048,4.48474089222155,7.26095121983129,6.78182083710598,5.40163972951924,3.81294358182224,5.41045134095821,2.79175284497385,6.24472429292685,3.89748020644795,4.29137416214995,4.41839513483037,4.52608959092673,7.10019185033229,2.31729825923573,2.88253006927829,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,8.36213219650751,0,2.3218396401599,3.60939740834793,0,0,0,0,0,0,0.134831308160164,0,0,0,4.20725321410337,9.0546282492908,24.9914809355421,0,0,0,0,0,2.57351715447788,0.329250856225877,0,0,0,0,0,1.44331342025273,0.579652024875384,2.11335649624479,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,1.56983518083505,4.3596006883328,1.7601188597028,2.45616259939778,3.57656445851882,5.071816515336,3.72313363218819,4.16029747645464,1.80045161983499,1.41849132023278,1.5985330740966,7.86378965119812,28.216323480355,6.58592269424615,2.93162565864362,3.909311436168,1.58390374586686,0,0,0.499864955910285,0,0,0,10.3038687861381,14.9320516584348,0,1.44781306667579,1.64381058040307,0.895304816199478,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.96306386750624,2.50085260529839,0.271265023699736,28.2840371681898,33.9015078714607,20.0282067093097,5.97421216462837,3.61135319673263,4.5481500811197,3.10419213877515,3.98535359121262,4.42486004500088,1.91143951829782,6.85304051119592,10.9805895619474,0,0,0,0.303127571446259,8.32177197552485,5.44302527993425,9.17998888929474,6.1384789315225,20.4881868936144,12.5576366270587,8.69902323413396,23.8063803292539,7.42090332224955,1.23367755042124,4.08391968220192,1.06765302817952,2.59627214591811,2.20799719073923,0,0.200506470303285,0,3.90369123759663,4.91646153618136,7.21184282276833,0,0,0.784349769176855,0,0,0,0,0.863663664408557,0,0.812839312631559,3.01013864312912,0,0,0,0,0,0,0.328014645699706,0,0,0.640986253728404,0.41254749960294,0.574265537996172,0,11.2478750890912,1.45006077438183,0.924291702687866,0.767518373630648,1.51620229732984,2.0409846524972,3.0453505721988,0.681813019328807,8.36901135079331,0.165284915360978,0.192190067365106,0,0.10115778085555,1.39453664789186,14.1665556073788,0.6970372701606,1.23213432070436,0.532306030317022,0,1.11194531462352,0.286249773483982,2.232950216158,1.89827654831236,6.29079639948622,2.55897791311334,0.855877976067841,0.95460974377781,2.35484592059769,2.51821440616641,5.21620356498504,3.06312246098785,0.404364963146632,6.34041284692033,1.68503382495592,5.36397112998549,1.46228093778771,0,2.59349831675173,11.5952454202044,3.39024349860728,2.75682671773062,0.66343897524122,0,0.578775534266688,3.9353685122798,2.02910376962704,0,1.69017361519345,1.43411352204052,4.02821068153797,2.1400263088875,0.354761064070598,4.01104507065562,4.93942339439853,0.75894634753143,1.74967360122491,0,0.670302275535787,0,0.188287601553558,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0,0,7.15391051622157,0,0,0,0.295930216910801,0,1.11136990144637,0,0,1.99613798001194,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,1.15425387755696,0.227884111694002,0,0,0.217294743844016,0.638002319463839,2.1983422416447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.83309043480088,0.296521128680622,0,0,0,14.4463976513782,0,0,0,0,0.394584402849391,6.04953580243319,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0.146178634172371,0,0.0969890164884194,0.0882561266915003,5.87549926029384,0,0,0,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0.577901179803038,0,0,0,0.429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| |||
|short_description=p40@COL1A1 | |||
}} |
Revision as of 16:12, 20 January 2014
Short description: | p40@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_40_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 399bp_to_ENST00000486572_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.64e-24 | 76 |
multi fate stem cell | 8.96e-18 | 427 |
somatic stem cell | 6.61e-17 | 433 |
stem cell | 8.56e-16 | 441 |
connective tissue cell | 1.05e-11 | 361 |
preadipocyte | 1.27e-10 | 12 |
stromal cell | 1.29e-10 | 28 |
mesenchymal cell | 2.35e-10 | 354 |
muscle precursor cell | 8.20e-10 | 58 |
myoblast | 8.20e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.20e-10 | 58 |
extracellular matrix secreting cell | 1.19e-09 | 15 |
muscle cell | 1.79e-09 | 55 |
motile cell | 2.84e-08 | 386 |
smooth muscle cell | 4.13e-08 | 43 |
smooth muscle myoblast | 4.13e-08 | 43 |
mesenchymal stem cell of adipose | 1.06e-07 | 8 |
electrically responsive cell | 1.19e-07 | 61 |
electrically active cell | 1.19e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.10e-12 | 371 |
skeletal muscle tissue | 1.92e-10 | 62 |
striated muscle tissue | 1.92e-10 | 62 |
myotome | 1.92e-10 | 62 |
muscle tissue | 8.71e-10 | 64 |
musculature | 8.71e-10 | 64 |
musculature of body | 8.71e-10 | 64 |
dense mesenchyme tissue | 6.25e-09 | 73 |
adipose tissue | 7.19e-09 | 14 |
somite | 1.29e-08 | 71 |
presomitic mesoderm | 1.29e-08 | 71 |
presumptive segmental plate | 1.29e-08 | 71 |
dermomyotome | 1.29e-08 | 71 |
trunk paraxial mesoderm | 1.29e-08 | 71 |
paraxial mesoderm | 2.35e-08 | 72 |
presumptive paraxial mesoderm | 2.35e-08 | 72 |
omentum | 1.27e-07 | 6 |
peritoneum | 1.27e-07 | 6 |
abdominal cavity | 1.27e-07 | 6 |
visceral peritoneum | 1.27e-07 | 6 |
multilaminar epithelium | 1.32e-07 | 83 |
epithelial vesicle | 1.58e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.84e-07 | 14 |