FFCP PHASE1:Hg19::chr17:48266548..48266566,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-403bp_to_ENST00000511732_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_53_at_COL1A1_5end | |||
|id=chr17:48266548..48266566,- | |||
|ontology_enrichment_celltype=CL:0000055!1.63e-33!180;CL:0000057!3.06e-25!75;CL:0000048!3.18e-14!430;CL:0000723!2.46e-13!436;CL:0000183!7.37e-13!59;CL:0000680!1.92e-12!57;CL:0000056!1.92e-12!57;CL:0000355!1.92e-12!57;CL:0000034!3.32e-12!444;CL:0000187!1.86e-11!54;CL:0002371!3.65e-10!591;CL:0000144!2.44e-09!625;CL:0000393!4.25e-09!60;CL:0000211!4.25e-09!60;CL:0002334!9.50e-09!12;CL:0000192!1.04e-08!42;CL:0000514!1.04e-08!42;CL:0002620!1.33e-08!23;CL:0002320!1.64e-08!365;CL:0000499!2.10e-07!27;CL:0000327!4.78e-07!14;CL:0000134!5.77e-07!358;CL:0002570!9.22e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.63e-12;55!CL:0000048;9.84e-11;58!CL:0002320;1.49e-10;188!CL:0000057;1.59e-10;73!CL:0000723;3.38e-10;61!CL:0002334;1.21e-09;12!CL:0002620;5.42e-09;23!CL:0000499;1.15e-08;28!CL:0000034;2.76e-08;69!CL:0002569;3.19e-08;6!CL:0002570;1.14e-07;8!CL:0000349;1.74e-07;19!CL:0000327;2.72e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.88e-28,76;CL:0000048,2.62e-16,427;CL:0000723,1.26e-15,433;CL:0002320,1.69e-15,361;CL:0000034,9.50e-15,441;CL:0000134,1.35e-14,354;CL:0000219,6.21e-12,386;CL:0002334,1.49e-09,12;CL:0002620,3.65e-09,23;CL:0000499,9.02e-09,28;CL:0002569,3.44e-08,6;CL:0002570,1.12e-07,8;CL:0000327,1.65e-07,15;CL:0000349,2.05e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.34e-14!83;UBERON:0002329!2.34e-14!83;UBERON:0003077!2.34e-14!83;UBERON:0003059!2.34e-14!83;UBERON:0007282!2.34e-14!83;UBERON:0009618!2.34e-14!83;UBERON:0007285!2.34e-14!83;UBERON:0001134!1.84e-13!61;UBERON:0002036!1.84e-13!61;UBERON:0003082!1.84e-13!61;UBERON:0004290!2.68e-13!70;UBERON:0002385!1.44e-12!63;UBERON:0001015!1.44e-12!63;UBERON:0000383!1.44e-12!63;UBERON:0000486!3.13e-11!82;UBERON:0005256!4.67e-09!143;UBERON:0002384!1.87e-08!375;UBERON:0002199!1.38e-07!45;UBERON:0002416!1.38e-07!45;UBERON:0001013!1.82e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.07e-09;198!UBERON:0004457;1.54e-09;9!UBERON:0000042;1.54e-09;9!UBERON:0003104;3.96e-09;7!UBERON:0009142;3.96e-09;7!UBERON:0003688;5.13e-09;6!UBERON:0002358;5.13e-09;6!UBERON:0003684;5.13e-09;6!UBERON:0001178;5.13e-09;6!UBERON:0003422;3.19e-08;6!UBERON:0001013;3.43e-08;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.74e-15,371;UBERON:0003688,6.65e-09,6;UBERON:0002358,6.65e-09,6;UBERON:0003684,6.65e-09,6;UBERON:0001178,6.65e-09,6;UBERON:0001013,3.12e-08,14;UBERON:0003422,3.44e-08,6;UBERON:0002199,5.73e-08,46;UBERON:0002416,5.73e-08,46;UBERON:0002097,1.84e-07,41;UBERON:0003102,9.58e-07,99 | |||
|phase1_expression=3.08853244759946,5.99481466894753,4.51054093107108,3.00219895059391,12.0679495495368,5.23403114460221,10.1319951267324,0.631719873426831,0,0,0,0,3.9565046734268,0.74259811776028,0.994192127183747,0.672325146451775,0,0,0.487932798790507,0.738726348460727,3.26401105990805,0.940364164434263,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.767175371061182,1.80719576192283,4.51204119572301,1.88300474649071,6.36228757640879,4.37971383272372,0.283604451492204,0.665188192387692,1.22968699970376,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.94549513051573,3.03913227994991,0.264818361626438,12.6208113129478,3.54668382198357,5.04609840128076,3.20246987189115,6.66002380726332,0.622422070799533,1.61652806483626,0.653847612453835,3.32986340818849,0,0.234321431833797,0.312160076830321,0,0.448346041655403,0.117434498643765,0,0,0,0.61417158655884,0.619954687054593,5.94001428641027,7.41800787835671,5.46096817162816,7.18618141816238,0,0.125118519871964,0,1.31693286264251,3.37136575378922,3.45547535485173,1.13432183160021,2.51145489964407,3.20336083227851,2.96704661623387,3.90118424909723,1.75189299705346,5.15281080091258,2.97786970130544,2.53164498361899,3.21542117031955,3.78650661366172,1.28869858099219,4.52608959092673,5.68015348026583,1.71278566986988,1.18692414617341,0,0,0,0,0,0,0,0,0,0,2.57296375277154,1.38134921352481,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,1.40241773803446,4.5273141246454,5.88034845542168,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,1.44331342025273,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.448524337381443,0.87192013766656,0.51336800074665,2.32689088364,3.57656445851882,1.690605505112,1.06375246633948,2.08014873822732,0.771622122786426,0,1.3321108950805,3.0025378668211,11.9376753186117,4.11620168390384,0.65147236858747,4.6200953336531,1.58390374586686,0.301439377059586,0,0.499864955910285,0,0,0,3.11512312139057,6.89171615004683,0,1.44781306667579,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,1.00034104211935,0.542530047399471,11.854339107256,14.0958901149758,5.36188211115378,1.17141414992713,3.00946099727719,11.3703752027992,0,0.664225598535437,2.39679919104214,0.60818530127658,2.93701736194111,6.51972505240626,0,0,0,0,3.32870879020994,3.0239029332968,4.21783273291921,2.76231551918512,10.9457436828899,6.27881831352935,2.55853624533352,11.903190164627,2.96836132889982,0.462629081407967,3.19611105563629,0.246381468041427,1.03850885836724,1.39452454151951,0,0,0,2.06666006696292,1.0925470080403,2.88473712910733,0,0,0,0,0,0,0,0,0,1.08378575017541,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0,0.27470839445503,0,0,0.650060246036521,0,0.096670718292122,0.462145851343933,0.614014698904518,0.964856007391714,1.6113036730241,2.17525040871343,0.511359764496605,3.47224939022276,0,0.192190067365106,0,0,0.929691098594572,11.6480568327337,0,0.308033580176089,0,0,0,0.572499546967965,0.744316738719335,0.316379424718726,4.76575484809562,2.303080121802,0.42793898803392,0,3.92474320099615,0.719489830333259,1.64722217841633,1.88499843753098,0.808729926293264,0,0.421258456238981,2.92580243453754,0.487426979262569,0,1.63799893689583,5.37340641424108,0,1.10273068709225,0.66343897524122,0.438450885253763,1.73632660280006,0.655894752046633,1.01455188481352,0.30982349809975,0.845086807596724,0.286822704408103,1.08073945114433,0.35667105148125,0.709522128141196,2.9555068941673,3.62224382255892,0.75894634753143,2.44954304171488,0,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0,0,6.53183134089796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.692552326534174,0,0,0,0,0.31900115973192,1.64875668123352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.2231988256891,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0.0730893170861856,0,0.0969890164884194,0,3.84167259326905,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0.558564802544508,0,0,0.199679000498991,0,0,0.604651252380536,3.24269895188163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0.864221491201268,1.95952416065645,1.19730191562487,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32838928371935,6.54397267572229,2.21922344601045,0.947015026375446,2.0125432140206,1.77962244319307,0.457680136793847,2.57092570397506,2.79786961049005,0.591420599958536,1.43367090447332,1.34940933649081,1.39736661188633,0.414706207840855,3.72178400381193,1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| |||
|short_description=p53@COL1A1 | |||
}} |
Revision as of 16:12, 20 January 2014
Short description: | p53@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_53_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -403bp_to_ENST00000511732_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.88e-28 | 76 |
multi fate stem cell | 2.62e-16 | 427 |
somatic stem cell | 1.26e-15 | 433 |
connective tissue cell | 1.69e-15 | 361 |
stem cell | 9.50e-15 | 441 |
mesenchymal cell | 1.35e-14 | 354 |
motile cell | 6.21e-12 | 386 |
preadipocyte | 1.49e-09 | 12 |
skin fibroblast | 3.65e-09 | 23 |
stromal cell | 9.02e-09 | 28 |
mesenchymal stem cell of umbilical cord | 3.44e-08 | 6 |
mesenchymal stem cell of adipose | 1.12e-07 | 8 |
extracellular matrix secreting cell | 1.65e-07 | 15 |
extraembryonic cell | 2.05e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.74e-15 | 371 |
omentum | 6.65e-09 | 6 |
peritoneum | 6.65e-09 | 6 |
abdominal cavity | 6.65e-09 | 6 |
visceral peritoneum | 6.65e-09 | 6 |
adipose tissue | 3.12e-08 | 14 |
mesenchyme of umbilical cord | 3.44e-08 | 6 |
integument | 5.73e-08 | 46 |
integumental system | 5.73e-08 | 46 |
skin of body | 1.84e-07 | 41 |
surface structure | 9.58e-07 | 99 |