FFCP PHASE1:Hg19::chr20:35177588..35177615,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C384 | |||
|description=CAGE_peak_at_chr20:35177588..35177615,- | |||
|id=chr20:35177588..35177615,- | |||
|ontology_enrichment_celltype=CL:0000055!5.69e-18!180;CL:0000192!3.06e-13!42;CL:0000514!3.06e-13!42;CL:0000359!2.34e-11!32;CL:0000057!4.76e-11!75;CL:0000680!1.11e-10!57;CL:0000056!1.11e-10!57;CL:0000355!1.11e-10!57;CL:0000183!2.46e-10!59;CL:0000187!5.31e-10!54;CL:0000393!2.38e-09!60;CL:0000211!2.38e-09!60;CL:0000222!2.46e-07!119;CL:0000136!4.80e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.44e-10;32!CL:0000192;2.20e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.28e-11,32;CL:0000192,1.61e-09,43;CL:0000514,1.61e-09,43 | |||
|ontology_enrichment_development_v019=CL:0000514;2.20e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.04e-12!83;UBERON:0002329!9.04e-12!83;UBERON:0003077!9.04e-12!83;UBERON:0003059!9.04e-12!83;UBERON:0007282!9.04e-12!83;UBERON:0009618!9.04e-12!83;UBERON:0007285!9.04e-12!83;UBERON:0002385!2.25e-11!63;UBERON:0001015!2.25e-11!63;UBERON:0000383!2.25e-11!63;UBERON:0004290!5.47e-11!70;UBERON:0005256!6.10e-11!143;UBERON:0001134!2.40e-10!61;UBERON:0002036!2.40e-10!61;UBERON:0003082!2.40e-10!61;UBERON:0000481!1.22e-09!347;UBERON:0000486!2.26e-09!82;UBERON:0004872!3.31e-09!84;UBERON:0001637!1.50e-08!42;UBERON:0003509!1.50e-08!42;UBERON:0004572!1.50e-08!42;UBERON:0002100!2.17e-08!216;UBERON:0001135!2.19e-08!15;UBERON:0001009!2.91e-08!113;UBERON:0003104!6.41e-08!238;UBERON:0009142!6.41e-08!238;UBERON:0003914!7.36e-08!118;UBERON:0000468!9.69e-08!659;UBERON:0004573!9.89e-08!33;UBERON:0004571!9.89e-08!33;UBERON:0001981!1.05e-07!60;UBERON:0007500!1.05e-07!60;UBERON:0004537!1.05e-07!60;UBERON:0006965!1.05e-07!60;UBERON:0002049!1.08e-07!79;UBERON:0007798!1.08e-07!79;UBERON:0004535!2.04e-07!110;UBERON:0000055!2.59e-07!69;UBERON:0007100!4.30e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;6.10e-07;15!UBERON:0000160;7.06e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,1.50e-07,122;UBERON:0001637,3.10e-07,42;UBERON:0003509,3.10e-07,42;UBERON:0004572,3.10e-07,42;UBERON:0003104,3.97e-07,160;UBERON:0009142,3.97e-07,160;UBERON:0004872,4.50e-07,83;UBERON:0001009,4.91e-07,112;UBERON:0007503,5.08e-07,78;UBERON:0002385,5.36e-07,64;UBERON:0001015,5.36e-07,64;UBERON:0000383,5.36e-07,64;UBERON:0003914,5.82e-07,117;UBERON:0000926,8.19e-07,315;UBERON:0004120,8.19e-07,315;UBERON:0006603,8.19e-07,315 | |||
|phase1_expression=3.27021082687002,2.99740733447376,1.12763523276777,6.00439790118782,9.83314407740033,10.4680622892044,20.2639902534648,0.631719873426831,0.783556884599516,1.47440361900905,2.09340350391728,0,0.791300934685361,0.123766352960047,0.331397375727916,0.672325146451775,1.20538905604795,1.46062018077475,3.90346239032406,0.123121058076788,0.408001382488506,0.626909442956176,0,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.0843174571537,0.50133791063589,1.30361867064741,0,0,0.472674085820339,1.10864698731282,1.05401742831751,0.916853528483988,0,0,0,0.174129737299267,0.664789802594326,0,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0.71153252537342,0,0,0,0.488124115096339,0,0,0.0892997282840798,0,0,1.53316637465883,0,0,0,0,0,2.98183171017191,1.2663051166458,0.397227542439656,0.860509862246441,0.354668382198357,3.92474320099615,4.2699598291882,3.7000132262574,0,0.67355336034844,0.326923806226917,0,0,0,1.5608003841516,0.570471821544449,0.747243402759005,0.117434498643765,0,0,0,0.245668634623536,0.103325781175765,1.18800285728205,3.4617370098998,0,4.31170885089743,0.168336113954066,0.125118519871964,0,2.19488810440419,4.90380473278431,2.70428506031874,0.453728732640084,0.538168907066586,1.06778694409284,0,1.20036438433761,0.618315175430633,0.257640540045629,1.30281799432113,0,0.292311015483596,1.00973509697646,1.19664868234989,0.161646056818812,1.77504796258307,0.806016785821122,1.18692414617341,0,0,0,0.243947412259191,0.132529768321485,0,0.310983165046111,1.00928340350251,0.36497735907583,0,3.21620469096443,5.52539685409922,1.39310378409594,2.16563844500876,0.236613600079688,0.168584690078102,0.482022059766964,0.220587945464788,0,0,0.269662616320329,0.588664395376038,0.769494313892781,0,1.40241773803446,0.4115740113314,7.3504355692771,0,0,0,0,0.122988438543114,0,0,0,0,0.0925884451585296,0,1.03993478527958,2.88662684050547,0,0.939269553886573,0.144366447761074,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0.300343057843917,0,0,0,0.2933531432838,1.16344544182,0,1.690605505112,2.12750493267896,1.04007436911366,0.257207374262142,0,0,1.14382394926518,1.08524321078289,0,0.65147236858747,0.710783897485092,0,0.904318131178758,0,3.69900067373611,0,0,0,0.718874566474748,3.44585807502342,0,1.15825045334063,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.613457458595699,0,0.542530047399471,3.32753378449291,4.10386674233472,3.46945313074656,1.63997980989798,2.10662269809403,0,0,0.664225598535437,2.39679919104214,1.30325421702124,0.195801157462741,0.343143423810856,0,0,0.106727557803444,0,0,0,1.48864684691266,0.767309866440312,5.61320188866147,0.896974044789907,0,8.68611174175481,4.45254199334973,1.23367755042124,3.37367278094941,0.492762936082855,2.07701771673448,1.16210378459959,0.120859449591622,1.00253235151642,0.0920809889358963,0.918515585316854,1.63882051206045,3.01586154406675,0,0.15403067420883,0,0,0,0,0,0,3.08454505380579,0.270946437543853,2.50844886927427,0,0,0.671624264166535,0,0,0.256450125116389,0,0,0.206082023295445,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0.580066775656914,0,0.979352392114111,0,0.384380134730212,0,0.10115778085555,3.253918845081,0.94443704049192,2.0911118104818,0.616067160352178,2.12922412126809,0.869932992075073,1.29726953372744,0.429374660225974,0,0.316379424718726,3.24071329670502,0.255897791311334,0.42793898803392,1.59101623962968,3.13979456079692,0.719489830333259,2.19629623788844,1.06031162111118,1.81964233415984,1.58510321173008,2.94880919367287,0,0.731140468893853,3.16950440270266,1.22849920267187,0.707027159768564,0,0,0.66343897524122,3.94605796728386,0.578775534266688,0.655894752046633,5.68149055495571,4.02770547529675,1.69017361519345,0,1.57198465620994,2.1400263088875,0.709522128141196,1.68886108238131,2.63435914367922,0,1.74967360122491,0,0,0,0.0941438007767792,0,1.68471475667626,0,0,0,0,0,0,0,0,0,1.58625035258854,1.28188885352968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0.728163130497081,0,0,0,0,0,0,0.140669416410513,0.556543525114529,0,0,9.76315142430242,1.10513566212459,0,0,0,3.42143546427988,0.0898683511473268,0,0,8.28604607350242,0,0,0,0.0927680981618513,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30850775511391,0.797594390929008,0,0,0.325942115766024,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,11.9431431729421,1.41532103205343,6.11030144933625,0,0,0,0.134802265961354,0,0,0,0,0,2.76209081994573,2.41981432097328,0,0.568679216656392,0,0,0,0,0,0,0,0.277349346026277,0,0,0,1.04836000945218,0.171986032471617,0,0,0,3.4916045935831,0,1.35588444468319,0.137041924646751,0,0.189932387867636,0,0.0801588202515337,2.13452994739353,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| |||
|short_description=p@chr20:35177588..35177615,- | |||
}} |
Revision as of 11:03, 21 January 2014
Short description: | p@chr20:35177588..35177615, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:35177588..35177615, - |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.28e-11 | 32 |
smooth muscle cell | 1.61e-09 | 43 |
smooth muscle myoblast | 1.61e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 1.50e-07 | 122 |
artery | 3.10e-07 | 42 |
arterial blood vessel | 3.10e-07 | 42 |
arterial system | 3.10e-07 | 42 |
mesenchyme | 3.97e-07 | 160 |
entire embryonic mesenchyme | 3.97e-07 | 160 |
splanchnic layer of lateral plate mesoderm | 4.50e-07 | 83 |
circulatory system | 4.91e-07 | 112 |
epithelial vesicle | 5.08e-07 | 78 |
muscle tissue | 5.36e-07 | 64 |
musculature | 5.36e-07 | 64 |
musculature of body | 5.36e-07 | 64 |
epithelial tube | 5.82e-07 | 117 |
mesoderm | 8.19e-07 | 315 |
mesoderm-derived structure | 8.19e-07 | 315 |
presumptive mesoderm | 8.19e-07 | 315 |