FFCP PHASE1:Hg19::chr21:17566504..17566519,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388815 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=1274 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-179bp_to_ENST00000419952,NR_027791,uc002ykc.2_5end | |||
|coexpression_cluster_id=C4066 | |||
|description=CAGE_peak_15_at_LINC00478_5end | |||
|id=chr21:17566504..17566519,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.72e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000594;1.40e-10;3!CL:0002605;2.92e-10;3!CL:0002504;4.54e-10;3!CL:1000279;4.54e-10;3!CL:1000280;4.54e-10;3!CL:0002549;5.02e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.12e-10,3;CL:0000594,2.12e-10,3;CL:0002504,4.52e-10,3;CL:1000279,4.52e-10,3;CL:1000280,4.52e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0007297;7.54e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.87e-09!659;UBERON:0005743!9.65e-09!86;UBERON:0001737!1.52e-08!9;UBERON:0001017!2.32e-08!82;UBERON:0000481!3.46e-08!347;UBERON:0007023!1.40e-07!115;UBERON:0000475!2.42e-07!365;UBERON:0002616!6.77e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.32e-11;9!UBERON:0001557;1.32e-11;9!UBERON:0006947;6.85e-11;3!UBERON:0004054;6.85e-11;3!UBERON:0003135;5.71e-10;11!UBERON:0005904;2.95e-08;4!UBERON:0005629;5.02e-07;2!UBERON:0005358;5.02e-07;2!UBERON:0001886;5.02e-07;2!UBERON:0004086;5.02e-07;2!UBERON:0005282;5.02e-07;2!UBERON:0005281;5.02e-07;2!UBERON:0000059;7.94e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.47e-11,9;UBERON:0006947,5.98e-11,3;UBERON:0004054,5.98e-11,3;UBERON:0003135,7.13e-10,11;UBERON:0005904,2.67e-08,4;UBERON:0000059,6.60e-07,11 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0.140954404095971,0,1.34088328328186,0,2.53299878168311,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0.487932798790507,0.738726348460727,0.204000691244253,0.940364164434263,5.72471974262113,1.50561867580173,1.50651167513763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.724232594804119,0,0,0.472674085820339,0.221729397462564,0.263504357079378,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0.208994966536811,0,0,0.33472061276467,0,0,0,0,0,0.892997282840798,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,1.05950199351452,1.15235184896,0,0,0,0.149448680551801,0.352303495931295,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0,0.179389635688862,0.213557388818567,0.847727604638247,0.300091096084402,0.515262646192195,1.28820270022815,0.558350568994769,0.168776332241266,0,0.252433774244115,0.552299391853796,0.161646056818812,0,0,0.339121184620975,0.193260853163297,0,0,0,0,0.348581828608555,0.414644220061482,0,0,0,0,0,0,0,0.828147600278907,1.34867752062481,1.20505514941741,1.32352767278873,0.653638332277218,1.18635309555548,0.943819157121151,1.96221465125346,1.92373578473195,1.4763109092493,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0.571652865261156,0.560655421726804,1.74384027533312,0,0.129271715757778,0,0,0.26593811658487,0,0.514414748524284,0,0,0,0.542621605391443,0,0.325736184293735,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0.508189248444927,1.30139853857622,1.54657762555539,0.335032530668698,1.27587750330633,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0.664225598535437,0,0.868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0.767309866440312,0,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0,0.410635780069046,0.519254429183621,0,0.120859449591622,0,0,0,0.546273504020151,0.786746489756545,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0.656029291399411,0,0.309123034943167,0.183138929636687,0.495056999523528,0,0,0,0.290012154876366,0.462145851343933,0.921022048356777,0.964856007391714,4.51165028446749,2.61030049045611,1.27839941124151,0.356128142586949,0,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0.372158369359667,0,0.190630193923825,0.255897791311334,0.855877976067841,0,0,1.97859703341646,2.74537029736055,1.06031162111118,0,0,0,1.46290121726877,0,0,0.272999822815972,0,0,0,0,0,0.578775534266688,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0.7133421029625,0.354761064070598,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.577076851905779,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0.879049075631364,1.69904730449319,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0,0,0.597743964753209,1.38141957765574,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0.110579259931225,0,0,0.10893846351899,0,4.46311499322023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.530745387020035,0.611030144933625,0,0,0.104421949505455,0.404406797884062,3.21031058919516,0,0,0,0,2.76209081994573,1.20990716048664,0.61214552326098,0.568679216656392,0.751617097072463,0.311064574191741,0,0,0,0,0,0,0,0,0,3.14508002835654,0,4.74106023316517,4.89698424477443,5.3375047084586,0,0.264768380074501,0.677942222341597,0,0,0.0633107959558787,0,0,1.06726497369676,0,0,0.458146384663663,0,0,0,0,0,0,0.407992870545287,0.288950589901519,0,0.273810757783986,0,0.429765441419957,0,0.279282401272254,0.916641696046735,0,0.199679000498991,0,0,0.268733889946905,0,0,0,0,0,0,0,0,0.272406812223151,0,0.137539436597234,0,0,0,0,0,0.315222829196793,0.314727528809989,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0.314408610199332,0.414239055347196,0,0,0,0,0.544017803369474,1.5041393641362,0.612691153526923,0.655745261419609,0,0,0.122026264901963,0.1251909307065,1.14681839138014,0.221858103073705,0.18628920882415,9.96110171540862,0,0.151649117541648,0,0,0,0,0.149254802886874,0.467426619694449,0.554805861502613,0,0.754703705257725,0,0.228840068396924,0,0.15543720058278,0,0,0,0.155262956876259,0.829412415681711,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0.352675943690684,0,0.06422922509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| |||
|short_description=p15@LINC00478 | |||
}} |
Revision as of 13:02, 21 January 2014
Short description: | p15@LINC00478 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_LINC00478_5end |
Coexpression cluster: | C4066_uterus_cervix_seminal_medulloblastoma_Skeletal_ductus_epitheloid |
Association with transcript: | -179bp_to_ENST00000419952, NR_027791, uc002ykc.2_5end |
EntrezGene: | LINC00478 |
HGNC: | 1274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.12e-10 | 3 |
skeletal muscle satellite cell | 2.12e-10 | 3 |
enteric smooth muscle cell | 4.52e-10 | 3 |
smooth muscle cell of large intestine | 4.52e-10 | 3 |
smooth muscle cell of colon | 4.52e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.47e-11 | 9 |
male genital duct | 5.98e-11 | 3 |
internal male genitalia | 5.98e-11 | 3 |
male reproductive organ | 7.13e-10 | 11 |
duct of male reproductive system | 2.67e-08 | 4 |
large intestine | 6.60e-07 | 11 |