FFCP PHASE1:Hg19::chr21:47532083..47532106,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-225bp_to_ENST00000460886_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_11_at_COL6A2_5end | |||
|id=chr21:47532083..47532106,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.17e-48!180;CL:0000057!6.85e-28!75;CL:0000680!2.65e-20!57;CL:0000056!2.65e-20!57;CL:0000355!2.65e-20!57;CL:0000187!3.26e-19!54;CL:0000183!6.12e-19!59;CL:0000393!1.90e-16!60;CL:0000211!1.90e-16!60;CL:0000192!2.81e-15!42;CL:0000514!2.81e-15!42;CL:0000048!6.03e-14!430;CL:0000723!8.28e-13!436;CL:0000034!1.93e-12!444;CL:0002620!1.63e-11!23;CL:0000359!4.41e-11!32;CL:0000499!2.81e-08!27;CL:0000136!1.41e-07!15;CL:0000222!1.58e-07!119;CL:0002570!5.96e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.88e-14;23!CL:0000057;3.11e-13;73!CL:0000192;3.23e-11;43!CL:0000723;1.09e-10;61!CL:0000187;1.22e-10;55!CL:0000134;1.40e-10;55!CL:0002320;3.83e-10;188!CL:0000393;2.77e-09;61!CL:0000211;2.77e-09;61!CL:0000048;2.93e-09;58!CL:0000359;3.64e-09;32!CL:0002570;1.37e-08;8!CL:0000499;8.36e-08;28!CL:0000034;1.03e-07;69!CL:0002334;3.48e-07;12!CL:0000136;4.57e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.24e-33,76;CL:0000048,4.05e-25,427;CL:0000723,5.92e-24,433;CL:0000034,1.85e-22,441;CL:0000680,1.14e-20,58;CL:0000056,1.14e-20,58;CL:0000355,1.14e-20,58;CL:0000187,2.64e-19,55;CL:0000393,1.38e-16,61;CL:0000211,1.38e-16,61;CL:0000192,6.13e-15,43;CL:0000514,6.13e-15,43;CL:0002620,1.26e-14,23;CL:0002320,2.22e-13,361;CL:0000134,8.72e-11,354;CL:0000359,1.59e-09,32;CL:0000219,1.04e-08,386;CL:0000136,1.42e-08,15;CL:0002570,1.65e-08,8;CL:0000499,9.09e-08,28;CL:0002334,3.29e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;3.23e-11;43!CL:0000355;4.03e-11;58 | |||
|ontology_enrichment_disease=DOID:2394!1.63e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.71e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.03e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.74e-25!83;UBERON:0002329!2.74e-25!83;UBERON:0003077!2.74e-25!83;UBERON:0003059!2.74e-25!83;UBERON:0007282!2.74e-25!83;UBERON:0009618!2.74e-25!83;UBERON:0007285!2.74e-25!83;UBERON:0004290!6.94e-24!70;UBERON:0002385!7.99e-21!63;UBERON:0001015!7.99e-21!63;UBERON:0000383!7.99e-21!63;UBERON:0001134!1.46e-20!61;UBERON:0002036!1.46e-20!61;UBERON:0003082!1.46e-20!61;UBERON:0000486!4.27e-20!82;UBERON:0005256!3.13e-18!143;UBERON:0002100!8.81e-12!216;UBERON:0003102!5.63e-11!95;UBERON:0000475!2.54e-10!365;UBERON:0002199!1.33e-09!45;UBERON:0002416!1.33e-09!45;UBERON:0000490!1.99e-08!138;UBERON:0000481!2.78e-08!347;UBERON:0003104!2.86e-08!238;UBERON:0009142!2.86e-08!238;UBERON:0001013!5.15e-08!14;UBERON:0004872!9.04e-08!84;UBERON:0002097!2.58e-07!40;UBERON:0001637!6.56e-07!42;UBERON:0003509!6.56e-07!42;UBERON:0004572!6.56e-07!42;UBERON:0004573!7.02e-07!33;UBERON:0004571!7.02e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;5.89e-12;31!UBERON:0001015;5.89e-12;31!UBERON:0000383;5.89e-12;31!UBERON:0002384;1.24e-10;198!UBERON:0001013;3.19e-10;14!UBERON:0002199;1.92e-09;46!UBERON:0002416;1.92e-09;46!UBERON:0001134;2.78e-08;16!UBERON:0002036;2.78e-08;16!UBERON:0002204;3.23e-08;70!UBERON:0002097;4.91e-08;41!UBERON:0003102;1.34e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.16e-25,73;UBERON:0002329,1.73e-25,71;UBERON:0003059,1.73e-25,71;UBERON:0007282,1.73e-25,71;UBERON:0004290,1.73e-25,71;UBERON:0009618,1.73e-25,71;UBERON:0003077,7.78e-25,72;UBERON:0007285,7.78e-25,72;UBERON:0001134,2.56e-21,62;UBERON:0002036,2.56e-21,62;UBERON:0003082,2.56e-21,62;UBERON:0007503,2.63e-21,78;UBERON:0002385,3.82e-21,64;UBERON:0001015,3.82e-21,64;UBERON:0000383,3.82e-21,64;UBERON:0000486,1.17e-20,83;UBERON:0005256,1.14e-18,122;UBERON:0003104,2.06e-15,160;UBERON:0009142,2.06e-15,160;UBERON:0002199,7.18e-14,46;UBERON:0002416,7.18e-14,46;UBERON:0002384,3.00e-13,371;UBERON:0003102,9.67e-13,99;UBERON:0002097,9.10e-11,41;UBERON:0000490,1.25e-10,148;UBERON:0001013,3.90e-10,14;UBERON:0000926,5.74e-10,315;UBERON:0004120,5.74e-10,315;UBERON:0006603,5.74e-10,315;UBERON:0002100,7.55e-09,199;UBERON:0002204,1.19e-07,167;UBERON:0004573,3.81e-07,33;UBERON:0004571,3.81e-07,33;UBERON:0000479,7.01e-07,773 | |||
|phase1_expression=4.1786027232228,5.99481466894753,3.24195129420734,2.00146596706261,5.81049422755474,3.48935409640147,2.53299878168311,6.31719873426831,12.7980957817921,0,0,0.436882744260345,0,3.34169152992126,7.29074226601415,4.70627602516243,5.42425075221579,2.92124036154949,1.95173119516203,2.21617904538218,5.50801866359483,2.82109249330279,0.85870796139317,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0,4.87613732627923,0,0.895037932904712,2.89151321907653,8.02140657017423,6.80778639115871,1.5905718941022,11.1926020169606,0.472674085820339,0,0.087834785693126,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,3.03913227994991,5.29636723252875,12.0471380714502,2.4826786753885,0.560677600142307,1.06748995729705,2.71334303258876,2.48968828319813,1.48181739276657,1.47115712802113,7.41651395460164,3.45705554687999,3.04617861383936,4.99456122928513,1.1409436430889,7.92078006924546,1.76151747965647,2.91371299862637,1.68540968042698,4.28723759635276,5.52754427902956,4.13303124703062,11.8800285728205,9.1488763833066,1.82032272387605,7.18618141816238,2.86171393721913,2.75260743718321,1.38532057742091,2.19488810440419,9.19463387397059,6.15976041517047,0.680593098960126,4.66413052791041,10.6778694409284,9.96079935449941,4.80145753735044,6.80146692973697,5.41045134095821,4.28068769562657,6.41350062516812,3.70260619612555,5.3011092591264,6.44349290496095,11.9618082045921,8.52023022039874,3.42557133973977,3.56077243852024,0,0,0.286804595389004,0,0.265059536642971,0.69716365721711,0.310983165046111,0.252320850875628,0,1.56449532329816,14.7945415784364,1.38134921352481,1.85747171212792,6.49691533502627,0,0,0,0,0,0,0,0,0,0.738155454624648,2.80483547606892,4.9388881359768,5.88034845542168,0,0,0.590789906681404,0,0.245976877086227,0.343135620597051,0,0,0,0,0.325808305310325,3.11980435583874,0,0.115930404975077,0.352226082707465,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,1.23392991243988,0,0,1.45770409648969,0.43596006883328,1.7601188597028,2.19761916788222,46.4953379607447,3.381211010224,1.86156681609409,0,2.82928111688356,1.41849132023278,2.66422179016099,3.28849385413739,9.22456729165453,0.823240336780769,4.23457039581856,3.55391948742546,0.791951872933429,0.301439377059586,1.74306691720059,0.599837947092342,0,0,0,2.39624855491583,2.29723871668228,1.42636905040718,2.89562613335158,3.49309748335652,1.79060963239896,0,0,0.646882724578552,0.128343036279748,0,0,0,0,0,0,0,0,2.94459580125936,6.00204625271613,7.05289061619313,3.95144636908534,1.78428988797162,0.946214490203608,1.99140405487612,3.31040709700491,4.5481500811197,4.1389228517002,1.99267679560631,2.39679919104214,4.69171518127647,10.1816601880625,10.2943027143257,0,0,0.106727557803444,0,0,0.30239029332968,2.48107807818777,2.76231551918512,7.85848264412606,4.22859192543813,2.55853624533352,2.57366273829772,0,5.39733928309294,5.68197521002007,3.77784917663522,4.15403543346897,5.22946703069817,0,0,0,3.4444334449382,6.3731908802351,7.47409165268718,0,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.824328093181778,0.457847324091717,0.330037999682352,0.574265537996172,0,6.42735719376638,4.73686519631398,2.92692372517824,5.06562126596228,2.48105830472155,3.86712881525785,5.36561767482646,5.79541066429486,4.18450567539666,0,0,0,0,0.464845549297286,12.5924938732256,2.0911118104818,2.15623506123262,2.12922412126809,0.869932992075073,7.78361720236464,0.858749320451947,1.116475108079,3.48017367190598,3.8126038784765,2.303080121802,2.1396949401696,7.95508119814842,7.06453776179307,2.87795932133304,4.94166653524899,3.41655966802491,2.83055474202642,0,0.842516912477962,2.43816869544795,2.92456187557541,7.39551027297288,3.41249778519964,5.93902814205594,5.65040583101214,3.30819206127675,2.65375590096488,2.19225442626881,5.78775534266688,3.9353685122798,0.811641507850816,1.8589409885985,2.53526042279017,0.860468113224309,1.8667317792493,1.78335525740625,1.77380532035299,3.37772216476263,2.30506425071931,1.89736586882858,3.49934720244983,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0,2.86493381685228,0,0,0,0,2.33748280548102,0,0,2.98871982376605,0.276283915531148,0,0.102268682502155,0,9.64222721751603,0,0,0,1.97286811273867,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.84680620409113,0.797594390929008,0,0.0897576444097721,0,0.638002319463839,2.01514705484097,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,1.85760885457012,0.611030144933625,0,0,0,0,3.21031058919516,0,0,0,0.485560759068186,0.789168805698781,1.2099071604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| |||
|short_description=p11@COL6A2 | |||
}} |
Revision as of 14:22, 21 January 2014
Short description: | p11@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -225bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.24e-33 | 76 |
multi fate stem cell | 4.05e-25 | 427 |
somatic stem cell | 5.92e-24 | 433 |
stem cell | 1.85e-22 | 441 |
muscle precursor cell | 1.14e-20 | 58 |
myoblast | 1.14e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.14e-20 | 58 |
muscle cell | 2.64e-19 | 55 |
electrically responsive cell | 1.38e-16 | 61 |
electrically active cell | 1.38e-16 | 61 |
smooth muscle cell | 6.13e-15 | 43 |
smooth muscle myoblast | 6.13e-15 | 43 |
skin fibroblast | 1.26e-14 | 23 |
connective tissue cell | 2.22e-13 | 361 |
mesenchymal cell | 8.72e-11 | 354 |
vascular associated smooth muscle cell | 1.59e-09 | 32 |
motile cell | 1.04e-08 | 386 |
fat cell | 1.42e-08 | 15 |
mesenchymal stem cell of adipose | 1.65e-08 | 8 |
stromal cell | 9.09e-08 | 28 |
preadipocyte | 3.29e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.16e-25 | 73 |
somite | 1.73e-25 | 71 |
presomitic mesoderm | 1.73e-25 | 71 |
presumptive segmental plate | 1.73e-25 | 71 |
dermomyotome | 1.73e-25 | 71 |
trunk paraxial mesoderm | 1.73e-25 | 71 |
paraxial mesoderm | 7.78e-25 | 72 |
presumptive paraxial mesoderm | 7.78e-25 | 72 |
skeletal muscle tissue | 2.56e-21 | 62 |
striated muscle tissue | 2.56e-21 | 62 |
myotome | 2.56e-21 | 62 |
epithelial vesicle | 2.63e-21 | 78 |
muscle tissue | 3.82e-21 | 64 |
musculature | 3.82e-21 | 64 |
musculature of body | 3.82e-21 | 64 |
multilaminar epithelium | 1.17e-20 | 83 |
trunk mesenchyme | 1.14e-18 | 122 |
mesenchyme | 2.06e-15 | 160 |
entire embryonic mesenchyme | 2.06e-15 | 160 |
integument | 7.18e-14 | 46 |
integumental system | 7.18e-14 | 46 |
connective tissue | 3.00e-13 | 371 |
surface structure | 9.67e-13 | 99 |
skin of body | 9.10e-11 | 41 |
unilaminar epithelium | 1.25e-10 | 148 |
adipose tissue | 3.90e-10 | 14 |
mesoderm | 5.74e-10 | 315 |
mesoderm-derived structure | 5.74e-10 | 315 |
presumptive mesoderm | 5.74e-10 | 315 |
trunk | 7.55e-09 | 199 |
musculoskeletal system | 1.19e-07 | 167 |
systemic artery | 3.81e-07 | 33 |
systemic arterial system | 3.81e-07 | 33 |
tissue | 7.01e-07 | 773 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.03e-08 | 14 |