FFCP PHASE1:Hg19::chr3:87040321..87040326,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-52bp_to_ENST00000383698_5end | |||
|coexpression_cluster_id=C1930 | |||
|description=CAGE_peak_9_at_VGLL3_5end | |||
|id=chr3:87040321..87040326,- | |||
|ontology_enrichment_celltype=CL:0000057!1.42e-18!75;CL:0000055!6.00e-13!180;CL:0002620!3.49e-09!23;CL:0000136!3.10e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.00e-08;19!CL:0002537;1.17e-07;5!CL:0000188;4.27e-07;9!CL:0000723;9.45e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.98e-12,76;CL:0000349,7.73e-09,19;CL:0002537,1.26e-07,5;CL:0000136,2.75e-07,15;CL:0000188,3.24e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!5.17e-11!57;UBERON:0003102!4.96e-10!95;UBERON:0000478!8.26e-10!24;UBERON:0005631!1.68e-08!14;UBERON:0000158!1.68e-08!14;UBERON:0000475!7.48e-08!365;UBERON:0002100!6.49e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.11e-12;24!UBERON:0005631;2.75e-11;10!UBERON:0000158;2.75e-11;10!UBERON:0004457;4.08e-10;9!UBERON:0000042;4.08e-10;9!UBERON:0003688;1.04e-08;6!UBERON:0002358;1.04e-08;6!UBERON:0003684;1.04e-08;6!UBERON:0001178;1.04e-08;6!UBERON:0000305;3.65e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,6.35e-12,24;UBERON:0005631,2.23e-11,14;UBERON:0000158,2.23e-11,14;UBERON:0004923,1.75e-09,66;UBERON:0004871,1.18e-08,8;UBERON:0003688,3.50e-08,6;UBERON:0002358,3.50e-08,6;UBERON:0003684,3.50e-08,6;UBERON:0001178,3.50e-08,6;UBERON:0000305,2.50e-07,7;UBERON:0004457,8.46e-07,12;UBERON:0000042,8.46e-07,12 | |||
|phase1_expression=2.36181893051724,1.71280419112787,3.10099689011137,4.00293193412522,2.23480547213644,0.872338524100369,0,0.631719873426831,0.783556884599516,0.737201809504527,0.697801167972428,1.96597234917155,0.791300934685361,0.74259811776028,2.98257638155124,0,1.80808358407193,0,0,0.123121058076788,0.816002764977012,0.313454721478088,0.286235987131057,0.136874425072884,0.502170558379211,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.53435074212236,0,1.00267582127178,0.434539556882471,0,0.486634870302636,0.756278537312543,0.665188192387692,0.790513071238134,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.379891534993739,0.397227542439656,0.286836620748814,0.354668382198357,0,0,0.24666754841716,1.24484414159907,0.404132016209064,0.326923806226917,0.756787138224657,1.15235184896,0.468642863667593,0.624320153660641,0,1.19558944441441,0.704606991862589,0.485618833104395,0.702254033511242,1.02077085627447,0.368502951935304,2.58314452939414,2.37600571456411,1.97813543422845,3.64064544775211,0,0.841680569770331,0.875829639103749,4.71008996323111,1.75591048352335,2.45190236639216,2.40380894250555,0.340296549480063,0.717558542755448,4.48470516518992,5.93409323246773,0.600182192168805,3.50378599410692,1.54584324027377,1.67505170698431,0.843881661206331,2.14361411354637,2.52433774244115,5.61504381718026,2.42469085228218,0.710019185033229,0.806016785821122,2.20428770003634,0,0,0,0,0,0,0.207322110030741,0,0,0,1.92972281457866,0,5.10804720835177,2.16563844500876,0.473227200159376,0,0.482022059766964,0.330881918197182,1.52515610864684,1.42362371466658,0.808987848960987,0.588664395376038,0.769494313892781,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0.737930631258681,0.686271241194102,0.109750285408626,0,0,0,0.977424915930974,0,0,0.115930404975077,1.99594780200897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0.66004457238855,0.646358578788889,0,1.690605505112,1.86156681609409,1.04007436911366,0.771622122786426,1.41849132023278,0.266422179016099,1.71573592389777,0,1.64648067356154,1.30294473717494,1.77695974371273,0,0,0,0.599837947092342,0,0,0,0.479249710983165,2.29723871668228,0,1.01346914667305,0.205476322550383,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,2.20844685094452,1.00034104211935,2.98391526069709,1.45579603071565,1.42743191037729,1.10391690523754,1.99140405487612,0.601892199455438,0,0,0.664225598535437,0.368738337083406,2.5196248195744,0.195801157462741,1.02943027143257,0,0,0,0.909382714338778,0,1.5119514666484,3.2254015016441,0.920771839728375,2.24528075546459,2.17836553734692,1.02341449813341,1.28683136914886,1.48418066444991,0.616838775210622,1.77561725313127,0.328508624055237,0,0.348631135379878,0.120859449591622,0,0,0.459257792658427,0.364182336013434,0.786746489756545,0.451199612907412,0.462092022626489,0,0,0.211103257785751,0,0,0.431831832204279,0,0.270946437543853,0,0.764628819135115,0,0,0,0,0.256450125116389,0,0.325378394664303,1.854738209659,0,0,0,0,3.21367859688319,0.48335359146061,2.46477787383431,2.14905144616581,1.65403886981437,3.11518710117994,3.48040065394148,1.44885266607372,1.86967274858148,0,0.192190067365106,0.255225424989168,0,0.929691098594572,1.25924938732256,0,0,0,0,0,0,0.744316738719335,2.84741482246853,3.0500831027812,0.255897791311334,1.71175595213568,0.95460974377781,0,3.77732160924961,1.64722217841633,1.7671860351853,0,0,0,1.46290121726877,0.487426979262569,0,0.682499557039929,0.848432591722276,1.13008116620243,0,0,0,0,0,0,0,0,1.57752487424457,2.35797698431491,0,0,4.85547561184627,4.61012850143863,0.379473173765715,0.699869440489966,0,0.670302275535787,0,1.50630081242847,0,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,1.61158997199083,0,0.222886768554957,0,5.72986763370456,2.37571744666111,10.7506245734731,0,0,0.667852230137435,0.16480387422676,0,0.597743964753209,0.276283915531148,0,0,0,3.42143546427988,0.179736702294654,0,0,1.479651084554,0,4.44547960578548,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,2.6002644994473,0,0,0,1.77148277162768,0,0,0,0,0,0,0.139423744278603,0.692552326534174,1.25336261431701,1.38338342632836,0,0.217294743844016,5.42301971544263,2.28993983504656,7.46248686426089,0,0.156980256395025,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.530745387020035,0.611030144933625,1.18608451472249,1.11207545051853,0.417687798021821,0,0,0,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0.330991955875499,0,0,0,0,0,0.195984794828755,0.261177619741208,0.698906672968121,0,0.580537987734511,0.803982487948041,0.492692742319255,0.484945082442097,0.706049013532002,0.451961481561065,0,0,0,0.782205530939212,0.801588202515337,0.640358984218058,0,0,0,0,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,0,0.859530882839914,0,0.279282401272254,1.14580212005842,0.717873024576814,0.199679000498991,0.858452096273142,0.223171457441873,0.806201669840715,1.80149941771202,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0.105600336519406,0,0.191915197319445,0,0,0,0.542999601753713,0,0.326587360109409,1.19730191562487,0,0.340776043570843,0.113312091520126,0,0,0,0,0.342173675768659,0.704815022316672,2.24253566392159,2.04365596629566,0,0,0,0,0,0.544017803369474,1.5041393641362,1.83807346058077,1.63936315354902,0.157054096250234,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0,0.895528817321244,1.8697064787778,1.66441758450784,0.757612021100357,2.51567901752575,4.44905610798268,0.228840068396924,1.96600200892211,0.15543720058278,0,0,0,0,0,0.53168342911599,0.521745061811734,0.150257608997218,1.90402606084398,0.406870733204662,0.909243296012797,0.107410557042488,0.928067519756987,0.398095888698616,0,1.37358282073117,1.01024846629776,3.78554694685953,0.385239660814607,1.71553273099941,0,0.453411851024545,0.694567422971502,0.734210113519403,0.71635536432595,0,0.657852148736121,1.59020231351293,0.38582807654183,0.337884881306145,0,0,0,0,0,0,0,0.327609848846413,0,0,0.39997479170986,0,0,0,0.736423801007363,0.139879507719444,0.622077260032973,0.127894371303652,0,0.157265941855896,0,0,0.425149840203366,0,0,2.86203915588077,0,0,2.46873160583479,2.1437183414724,0,0,0,0,0,0,0,0,0.0981477185010256,0.353909170043221,0,3.35024431835981,3.05105676373734,0,0,1.88025820873143,0,0,1.57144016688853,2.29280684514135,0,0,0,0,0,0,0,0.496211178389294,0,0.383287282918786,0,0,0,0,6.03176117105944,0,0.171488009437418,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0.627944742804112,0,0,0,0,0,0.285906176706625,0,0,5.73732298598512,2.40513409419076,0.414432328326074,1.3657478167516,1.38251932362818,0,0,0.170426809518315,0.423387050190929,0,0.62041277132864,0,0,0,0,0,1.12929087541872,0,1.45713297917742,0,0,5.35140408499059,0.67767649223376,0,0,0,0,0,0.245148321753905,0,0,0.297046400327086,0,2.54890672031725,0.0939839179798536,0.257831551894309,0,0,1.41157948686277,0,0,0.458729283404541,0,0,0,0,0,2.60396512716726,0.462175628631418,0.432626562123789,0.126166424835079,0,0,0,0,0,0,1.13668047327359,0,0,0.103432995861895,0,0.476128862927481,0,0.124149428591716,0.897054900644907,0.572824424503484,0,0,1.02669990325584,0.0673520530145875,0.78894425931944,0.332660356546013,0.162806537221949,2.45472895518746,0,0.718601616852695,4.69281884806909,1.58913877437726,1.22068853494722,1.33151354837103,0.402547587182052,0 | |||
|short_description=p9@VGLL3 | |||
}} |
Revision as of 19:58, 21 January 2014
Short description: | p9@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VGLL3_5end |
Coexpression cluster: | C1930_placenta_Fibroblast_amniotic_chorionic_bronchogenic_Hair_bone |
Association with transcript: | -52bp_to_ENST00000383698_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.98e-12 | 76 |
extraembryonic cell | 7.73e-09 | 19 |
amnion mesenchymal stem cell | 1.26e-07 | 5 |
fat cell | 2.75e-07 | 15 |
cell of skeletal muscle | 3.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 6.35e-12 | 24 |
extraembryonic membrane | 2.23e-11 | 14 |
membranous layer | 2.23e-11 | 14 |
organ component layer | 1.75e-09 | 66 |
somatic layer of lateral plate mesoderm | 1.18e-08 | 8 |
omentum | 3.50e-08 | 6 |
peritoneum | 3.50e-08 | 6 |
abdominal cavity | 3.50e-08 | 6 |
visceral peritoneum | 3.50e-08 | 6 |
amnion | 2.50e-07 | 7 |
cavity lining | 8.46e-07 | 12 |
serous membrane | 8.46e-07 | 12 |