FFCP PHASE1:Hg19::chr3:120128408..120128463,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C605 | |||
|description=CAGE_peak_at_chr3:120128408..120128463,- | |||
|id=chr3:120128408..120128463,- | |||
|ontology_enrichment_celltype=CL:0000055!1.10e-30!180;CL:0000057!4.71e-18!75;CL:0000222!6.86e-13!119;CL:0000680!1.85e-11!57;CL:0000056!1.85e-11!57;CL:0000355!1.85e-11!57;CL:0000187!2.00e-10!54;CL:0000393!6.16e-10!60;CL:0000211!6.16e-10!60;CL:0000192!6.91e-09!42;CL:0000514!6.91e-09!42;CL:0002620!1.25e-08!23;CL:0000183!1.50e-08!59;CL:0000220!2.76e-08!246;CL:0002321!3.30e-08!248;CL:0002334!5.94e-08!12;CL:0000499!7.56e-08!27;CL:0000359!1.01e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002334;4.82e-10;12!CL:0000349;1.73e-09;19!CL:0000499;2.23e-09;28!CL:0000359;5.29e-08;32!CL:0000057;1.44e-07;73!CL:0002620;4.11e-07;23!CL:0000192;4.35e-07;43!CL:0000077;5.23e-07;19!CL:0000134;5.56e-07;55!CL:0002320;8.44e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.92e-20,76;CL:0000680,3.73e-12,58;CL:0000056,3.73e-12,58;CL:0000355,3.73e-12,58;CL:0000187,2.03e-11,55;CL:0000048,3.56e-11,427;CL:0000393,1.56e-10,61;CL:0000211,1.56e-10,61;CL:0000222,1.90e-10,121;CL:0000723,1.92e-10,433;CL:0002334,2.10e-10,12;CL:0000192,8.04e-10,43;CL:0000514,8.04e-10,43;CL:0000034,1.62e-09,441;CL:0000349,1.93e-09,19;CL:0000499,2.07e-09,28;CL:0000359,8.73e-09,32;CL:0000077,3.02e-07,19;CL:0002620,5.51e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;4.35e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-13!83;UBERON:0002329!1.01e-13!83;UBERON:0003077!1.01e-13!83;UBERON:0003059!1.01e-13!83;UBERON:0007282!1.01e-13!83;UBERON:0009618!1.01e-13!83;UBERON:0007285!1.01e-13!83;UBERON:0000486!2.87e-13!82;UBERON:0004290!1.14e-12!70;UBERON:0002385!2.29e-12!63;UBERON:0001015!2.29e-12!63;UBERON:0000383!2.29e-12!63;UBERON:0001134!3.02e-12!61;UBERON:0002036!3.02e-12!61;UBERON:0003082!3.02e-12!61;UBERON:0004872!7.07e-10!84;UBERON:0002049!8.42e-10!79;UBERON:0007798!8.42e-10!79;UBERON:0003102!1.61e-09!95;UBERON:0005256!2.13e-09!143;UBERON:0000490!6.94e-08!138;UBERON:0004923!9.31e-08!57;UBERON:0002199!1.54e-07!45;UBERON:0002416!1.54e-07!45;UBERON:0001009!2.31e-07!113;UBERON:0002100!2.90e-07!216;UBERON:0000055!3.06e-07!69;UBERON:0004535!3.93e-07!110;UBERON:0001981!4.14e-07!60;UBERON:0007500!4.14e-07!60;UBERON:0004537!4.14e-07!60;UBERON:0006965!4.14e-07!60;UBERON:0001637!4.95e-07!42;UBERON:0003509!4.95e-07!42;UBERON:0004572!4.95e-07!42;UBERON:0000468!6.52e-07!659;UBERON:0000475!9.39e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.17e-09;9!UBERON:0000042;2.17e-09;9!UBERON:0000478;2.79e-08;24!UBERON:0005631;9.87e-08;10!UBERON:0000158;9.87e-08;10!UBERON:0003688;2.23e-07;6!UBERON:0002358;2.23e-07;6!UBERON:0003684;2.23e-07;6!UBERON:0001178;2.23e-07;6!UBERON:0002384;4.07e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.37e-12,62;UBERON:0002036,2.37e-12,62;UBERON:0003082,2.37e-12,62;UBERON:0002385,2.63e-12,64;UBERON:0001015,2.63e-12,64;UBERON:0000383,2.63e-12,64;UBERON:0007524,4.56e-11,73;UBERON:0002329,8.83e-11,71;UBERON:0003059,8.83e-11,71;UBERON:0007282,8.83e-11,71;UBERON:0004290,8.83e-11,71;UBERON:0009618,8.83e-11,71;UBERON:0000486,1.06e-10,83;UBERON:0003077,1.90e-10,72;UBERON:0007285,1.90e-10,72;UBERON:0007503,3.32e-09,78;UBERON:0000478,3.63e-08,24;UBERON:0001637,1.21e-07,42;UBERON:0003509,1.21e-07,42;UBERON:0004572,1.21e-07,42;UBERON:0005631,1.22e-07,14;UBERON:0000158,1.22e-07,14;UBERON:0005256,1.53e-07,122;UBERON:0004923,2.11e-07,66;UBERON:0003688,2.40e-07,6;UBERON:0002358,2.40e-07,6;UBERON:0003684,2.40e-07,6;UBERON:0001178,2.40e-07,6;UBERON:0003104,4.32e-07,160;UBERON:0009142,4.32e-07,160;UBERON:0002199,8.67e-07,46;UBERON:0002416,8.67e-07,46 | |||
|phase1_expression=7.81217030863394,18.6267455785155,7.18867460889453,9.00659685178174,7.59833860526389,12.2127393374052,2.53299878168311,1.26343974685366,3.13422753839806,0.491467873003018,0,1.52908960491121,2.90143676051299,0.495065411840187,1.65698687863958,0,3.01347264011988,0.730310090387373,2.92759679274304,0.61560529038394,1.02000345622126,1.25381888591235,1.14494394852423,1.23186982565596,2.25976751270645,0,0,0,0,0,0.154816123316076,0.919421224478927,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.895037932904712,6.86734389530676,8.02140657017423,8.11140506180613,1.5905718941022,5.83961844363163,1.41802225746102,3.1042115644759,1.58102614247627,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0.419499436209906,1.10047216776027,1.04497483268405,0.516833518338658,0.35576626268671,1.67360306382335,0.805658634218294,0.760272105718513,0.24406205754817,0.367663080345869,0,0.535798369704479,0.673588117878509,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,0,14.4121865991642,4.43206790826029,1.19168262731897,5.16305917347865,1.77334191099179,1.12135520028461,5.33744978648525,2.96001058100592,0.622422070799533,1.48181739276657,0.653847612453835,0.605429710579726,4.03323147135999,0,0.312160076830321,0.570471821544449,0.747243402759005,0.587172493218824,0.809364721840658,0.280901613404497,1.22492502752936,1.71968044236475,1.34323515528495,0,8.15980866619238,0,0.718618141816238,0.673344455816265,1.25118519871964,0,3.95079858792754,10.4205850571667,6.00952235626387,1.02088964844019,3.40840307808838,7.68806599746843,11.0204588602972,3.60109315301283,4.12210116953756,1.54584324027377,8.00302482225836,5.23206629947925,3.41029518064195,2.01947019395292,5.79914361446486,4.68773564774555,4.9701342952326,3.22406714328449,3.22165125389926,0.386521706326594,2.18196896472668,0.286804595389004,0.975789649036763,0,0.348581828608555,0.414644220061482,0.252320850875628,1.09493207722749,6.25798129319264,2.57296375277154,0,2.78620756819187,0.721879481669586,0.828147600278907,0,0,0.55146986366197,0.435758888184812,0.237270619111097,0.269662616320329,0.784885860501384,0.769494313892781,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0,1.54411029268673,0.109750285408626,0,0.201057944823262,0.0925884451585296,0,0,5.77325368101093,0.115930404975077,2.11335649624479,1.01056513432752,1.85194205030644,0.951270761172991,0,0,0,0,0,0,0.671928512795438,0.425325291727159,0,0.290633938513962,0.383382679165211,0,0,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0,1.20137223137567,0.571652865261156,0.784917590417525,0.87192013766656,1.68678057388185,1.68053230485111,0,0.845302752556,2.12750493267896,3.12022310734098,0.257207374262142,0,0,4.57529579706072,1.08524321078289,1.64648067356154,0.65147236858747,1.42156779497018,1.58390374586686,3.91871190177462,1.74306691720059,3.79897366491817,0,0,0,3.11512312139057,1.14861935834114,0,6.22559618670591,3.28762116080613,0.895304816199478,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,4.04881922673162,2.50085260529839,1.08506009479894,8.94274704582471,18.3781858461077,9.61984731707001,5.62278791965023,1.50473049863859,0,1.03473071292505,1.99267679560631,2.94990669666725,1.30325421702124,0,0.686286847621712,0,0,0,1.21251028578504,1.66435439510497,0.907170879989041,6.94701861892575,3.52962538562544,15.9976253826852,10.2511319404561,10.2341449813341,10.7772127166217,5.93672265779964,4.78050050788232,1.9531789784444,1.31403449622095,4.15403543346897,1.97557643381931,0,0.802025881213139,0.184161977871793,2.41110341145674,4.18809686415449,3.2781103739856,0,0.847168708148562,0,0,2.74434235121477,0,0,1.51141141271498,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0.328014645699706,0,0.103041011647722,0.915694648183434,0,0,0,6.42735719376638,0.386682873168488,2.61882649094895,1.84204409671355,1.24052915236078,2.0409846524972,4.49551751134108,1.27839941124151,1.69160867728801,0.991709492165869,0.576570202095319,0.255225424989168,0,0,4.40737285562896,0.6970372701606,1.84820148105653,1.59691809095107,0,3.33583594387056,5.29562080945368,0.744316738719335,1.89827654831236,3.43134349062885,0.255897791311334,3.42351190427136,1.59101623962968,6.27958912159384,1.79872457583315,1.92175920815238,1.53156123049392,0.404364963146632,0,2.10629228119491,0,4.14312932373184,6.33900880540533,1.9109987597118,2.2624869112594,3.39024349860728,3.30819206127675,1.32687795048244,7.0152141640602,0.578775534266688,1.9676842561399,1.62328301570163,1.54911749049875,1.69017361519345,1.29070216983646,1.17898849215745,2.49669736036875,0.709522128141196,7.59987487071591,8.89096210991735,0.75894634753143,0.349934720244983,0.577332676353072,0.670302275535787,0,0.847294206991012,0,0,0.443430153536676,0.459446800413919,0,0,0,0.238231775457789,0,0,0,0,0.534120355637366,0,0.245040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| |||
|short_description=p@chr3:120128408..120128463,- | |||
}} |
Revision as of 20:51, 21 January 2014
Short description: | p@chr3:120128408..120128463, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:120128408..120128463, - |
Coexpression cluster: | C605_hepatic_normal_osteoclastoma_tenocyte_neurofibroma_Ewing_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.92e-20 | 76 |
muscle precursor cell | 3.73e-12 | 58 |
myoblast | 3.73e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.73e-12 | 58 |
muscle cell | 2.03e-11 | 55 |
multi fate stem cell | 3.56e-11 | 427 |
electrically responsive cell | 1.56e-10 | 61 |
electrically active cell | 1.56e-10 | 61 |
mesodermal cell | 1.90e-10 | 121 |
somatic stem cell | 1.92e-10 | 433 |
preadipocyte | 2.10e-10 | 12 |
smooth muscle cell | 8.04e-10 | 43 |
smooth muscle myoblast | 8.04e-10 | 43 |
stem cell | 1.62e-09 | 441 |
extraembryonic cell | 1.93e-09 | 19 |
stromal cell | 2.07e-09 | 28 |
vascular associated smooth muscle cell | 8.73e-09 | 32 |
mesothelial cell | 3.02e-07 | 19 |
skin fibroblast | 5.51e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.37e-12 | 62 |
striated muscle tissue | 2.37e-12 | 62 |
myotome | 2.37e-12 | 62 |
muscle tissue | 2.63e-12 | 64 |
musculature | 2.63e-12 | 64 |
musculature of body | 2.63e-12 | 64 |
dense mesenchyme tissue | 4.56e-11 | 73 |
somite | 8.83e-11 | 71 |
presomitic mesoderm | 8.83e-11 | 71 |
presumptive segmental plate | 8.83e-11 | 71 |
dermomyotome | 8.83e-11 | 71 |
trunk paraxial mesoderm | 8.83e-11 | 71 |
multilaminar epithelium | 1.06e-10 | 83 |
paraxial mesoderm | 1.90e-10 | 72 |
presumptive paraxial mesoderm | 1.90e-10 | 72 |
epithelial vesicle | 3.32e-09 | 78 |
extraembryonic structure | 3.63e-08 | 24 |
artery | 1.21e-07 | 42 |
arterial blood vessel | 1.21e-07 | 42 |
arterial system | 1.21e-07 | 42 |
extraembryonic membrane | 1.22e-07 | 14 |
membranous layer | 1.22e-07 | 14 |
trunk mesenchyme | 1.53e-07 | 122 |
organ component layer | 2.11e-07 | 66 |
omentum | 2.40e-07 | 6 |
peritoneum | 2.40e-07 | 6 |
abdominal cavity | 2.40e-07 | 6 |
visceral peritoneum | 2.40e-07 | 6 |
mesenchyme | 4.32e-07 | 160 |
entire embryonic mesenchyme | 4.32e-07 | 160 |
integument | 8.67e-07 | 46 |
integumental system | 8.67e-07 | 46 |