FFCP PHASE1:Hg19::chr3:147128789..147128812,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:147128789..147128812,+ | |||
|id=chr3:147128789..147128812,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.08e-20!23;CL:0000243!5.51e-12!15;CL:0000125!5.51e-12!15;CL:0000030!5.51e-12!15;CL:0000339!5.51e-12!15;CL:0000055!2.05e-11!180;CL:0002319!1.42e-10!25;CL:0000095!2.78e-10!17;CL:0000123!2.78e-10!17;CL:0000128!6.81e-08!7;CL:0000126!6.81e-08!7;CL:0000127!6.81e-08!7;CL:0002453!6.81e-08!7;CL:0000133!2.00e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.24e-22;23!CL:0002559;2.60e-13;5!CL:0000243;8.42e-11;15!CL:0000125;8.42e-11;15!CL:0000056;8.61e-11;4!CL:0000188;9.28e-10;9!CL:0000095;1.78e-09;17!CL:0002564;4.90e-09;3!CL:0000708;6.24e-09;3!CL:0000346;9.27e-09;3!CL:1000428;9.27e-09;3!CL:0000515;4.17e-08;3!CL:0002603;4.17e-08;3!CL:0002319;1.41e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.32e-22,23;CL:0002559,1.98e-13,5;CL:0000243,6.82e-11,15;CL:0000125,6.82e-11,15;CL:0000030,6.82e-11,15;CL:0000339,6.82e-11,15;CL:0000515,7.63e-11,4;CL:0000095,1.48e-09,17;CL:0000123,1.48e-09,17;CL:0000188,2.07e-09,9;CL:0002564,4.32e-09,3;CL:0000346,6.98e-09,3;CL:1000428,6.98e-09,3;CL:0000708,6.98e-09,3;CL:0002603,3.22e-08,3;CL:0002319,1.29e-07,25;CL:0002575,9.83e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000339;8.42e-11;15!CL:0000515;8.61e-11;4 | |||
|ontology_enrichment_disease=DOID:17!1.19e-07!5;DOID:450!1.19e-07!5;DOID:66!1.19e-07!5;DOID:423!1.19e-07!5;DOID:0080000!1.19e-07!5;DOID:11722!1.19e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.39e-13;5!DOID:450;1.39e-13;5!DOID:66;1.39e-13;5!DOID:423;1.39e-13;5!DOID:0080000;1.39e-13;5!DOID:11722;1.39e-13;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.74e-13,5;DOID:450,1.74e-13,5;DOID:66,1.74e-13,5;DOID:423,1.74e-13,5;DOID:0080000,1.74e-13,5;DOID:11722,1.74e-13,5 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.72e-20!82;UBERON:0000073!9.87e-20!94;UBERON:0001016!9.87e-20!94;UBERON:0005743!1.25e-19!86;UBERON:0002097!8.67e-17!40;UBERON:0000955!9.80e-17!69;UBERON:0006238!9.80e-17!69;UBERON:0002199!3.83e-15!45;UBERON:0002416!3.83e-15!45;UBERON:0002616!2.08e-13!59;UBERON:0003075!3.06e-13!86;UBERON:0007284!3.06e-13!86;UBERON:0004121!1.20e-12!169;UBERON:0002346!4.07e-12!90;UBERON:0001049!5.01e-12!57;UBERON:0005068!5.01e-12!57;UBERON:0006241!5.01e-12!57;UBERON:0007135!5.01e-12!57;UBERON:0000924!5.93e-12!173;UBERON:0006601!5.93e-12!173;UBERON:0003076!2.26e-11!15;UBERON:0003057!2.26e-11!15;UBERON:0000153!5.19e-11!129;UBERON:0007811!5.19e-11!129;UBERON:0000033!5.70e-11!123;UBERON:0004733!9.31e-11!12;UBERON:0002028!9.31e-11!12;UBERON:0007277!9.31e-11!12;UBERON:0000475!2.52e-10!365;UBERON:0004732!1.07e-09!13;UBERON:0002067!1.66e-08!9;UBERON:0004016!1.66e-08!9;UBERON:0010083!1.66e-08!9;UBERON:0002680!1.95e-08!9;UBERON:0001895!1.95e-08!9;UBERON:0010092!1.95e-08!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;3.61e-20;16!UBERON:0002036;3.61e-20;16!UBERON:0002097;1.11e-16;41!UBERON:0004905;6.09e-16;8!UBERON:0000982;6.09e-16;8!UBERON:0004770;6.09e-16;8!UBERON:0011135;5.05e-14;5!UBERON:0002216;5.05e-14;5!UBERON:0011134;5.05e-14;5!UBERON:0002209;5.05e-14;5!UBERON:0002213;5.05e-14;5!UBERON:0007844;5.05e-14;5!UBERON:0011138;5.05e-14;5!UBERON:0001130;5.05e-14;5!UBERON:0001066;5.05e-14;5!UBERON:0001468;5.05e-14;5!UBERON:0002073;2.60e-13;5!UBERON:0002037;4.03e-11;6!UBERON:0002199;3.75e-10;46!UBERON:0002416;3.75e-10;46!UBERON:0002067;4.48e-10;9!UBERON:0003102;5.56e-10;50!UBERON:0002242;4.90e-09;3!UBERON:0003210;6.24e-09;3!UBERON:0002385;7.49e-09;31!UBERON:0001015;7.49e-09;31!UBERON:0000383;7.49e-09;31!UBERON:0000412;9.27e-09;3!UBERON:0001992;9.27e-09;3!UBERON:0002680;2.86e-07;9!UBERON:0001895;2.86e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.19e-20,41;UBERON:0002199,8.29e-18,46;UBERON:0002416,8.29e-18,46;UBERON:0004905,7.90e-16,8;UBERON:0000982,7.90e-16,8;UBERON:0004770,7.90e-16,8;UBERON:0011135,5.17e-14,5;UBERON:0002216,5.17e-14,5;UBERON:0011134,5.17e-14,5;UBERON:0002209,5.17e-14,5;UBERON:0002213,5.17e-14,5;UBERON:0005856,5.17e-14,5;UBERON:0005866,5.17e-14,5;UBERON:0005863,5.17e-14,5;UBERON:0007844,5.17e-14,5;UBERON:0011138,5.17e-14,5;UBERON:0001130,5.17e-14,5;UBERON:0001066,5.17e-14,5;UBERON:0001468,5.17e-14,5;UBERON:0002073,1.98e-13,5;UBERON:0005086,1.98e-13,5;UBERON:0002037,2.98e-11,6;UBERON:0006215,2.98e-11,6;UBERON:0002067,4.22e-10,9;UBERON:0004016,4.22e-10,9;UBERON:0010083,4.22e-10,9;UBERON:0002242,4.32e-09,3;UBERON:0003068,4.32e-09,3;UBERON:0002328,4.32e-09,3;UBERON:0004880,4.32e-09,3;UBERON:0000412,6.98e-09,3;UBERON:0003210,6.98e-09,3;UBERON:0001992,6.98e-09,3;UBERON:0002680,2.36e-07,9;UBERON:0001895,2.36e-07,9;UBERON:0010092,2.36e-07,9;UBERON:0000486,4.61e-07,83;UBERON:0002329,5.00e-07,71;UBERON:0003059,5.00e-07,71;UBERON:0007282,5.00e-07,71;UBERON:0004290,5.00e-07,71;UBERON:0009618,5.00e-07,71;UBERON:0003077,7.11e-07,72;UBERON:0007285,7.11e-07,72 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0.631719873426831,0,0,0,0,0,4.20805600064159,2.31978163009541,0,0,0,0,1.72369481307503,2.44800829493104,1.25381888591235,0.286235987131057,0.547497700291537,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.60709189178915,1.33037638477538,0.966182642624386,0,0,0,0,0,0,0,0,0,0.993812036833525,0,0.347140501607594,0,0.838998872419812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0,0,0,0,0,0,0,0,0,1.66493170409425,0.576175924479999,0,0.312160076830321,0,0.149448680551801,1.40921398372518,2.42809416552197,2.10676210053373,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0.113432183160021,2.15267562826634,1.49490172172997,3.60284231971255,2.40072876867522,4.225153698776,1.8034837803194,2.79175284497385,0.337552664482532,0.876933046450788,2.52433774244115,1.65689817556139,0,0.710019185033229,2.41805035746337,0.169560592310488,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,1.56449532329816,7.71889125831462,2.76269842704961,1.39310378409594,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,1.39116485970092,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24262168690721,2.61576041299968,3.00686971865895,0,0,1.690605505112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.13184525203592,1.59259437334337,2.05476322550383,1.61154866915906,0,0,0,0,1.27047312111232,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,4.41689370188904,2.50085260529839,2.44138521329762,0,0,0,0,0,0,1.03473071292505,0,0,0.60818530127658,3.52442083432933,3.77457766191941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98552587216571,0,0.813472649219715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38080608527693,1.23764249880882,0.574265537996172,0,0,3.28680442193215,1.07834031980251,1.07452572308291,1.37836572484531,0,0,0.767039646744908,1.15741646340759,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,0.949138274156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0.597743964753209,0,0,1.1249555075237,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,1.18193840883968,0,0.291604613383254,0,0,0.120596438625408,0,4.86548743697388,9.75307142546707,0.438770794307945,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0.156980256395025,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471807930864739,0,0.234264445725339,0,0,0,0,0,0,3.72800819808079,0,0,0,0,0,0,0,0,0,0,0,0,0.859930162358083,0,0,0,0,0.176512253383001,0.677942222341597,0,0.19871461170299,0.379864775735272,0,0,0,0,0.288180834308212,0,0,0.14405479798815,0,0,1.63085047288337,1.882851233622,0,4.04530825862126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89659637035217,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,4.46838880439127,0,0,0,0,2.82697373250422,0,0.732157589411779,0,0.573409195690071,0.443716206147409,0.683060432355218,0.830091809617385,0.249960815924213,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0.343395705182793,0.336749488765919,3.78554694685953,0,4.50327341887344,0,0,1.15761237161917,1.95789363605174,0,0.308801447160972,0,0.353378291891762,0,0,0,0,0.911579868532147,0,0,0,0,0,0,0,0,0,0,1.70254786070051,3.68211900503681,0,0,0,0.646948868380091,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.205116364240755,0,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,1.98916222116275,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.0634158101939068,0,0,0,0,0.894336993477167,0,0.672567444437648,0,0,0,0,0,0.815636795721981,0.131545547125698,0.118193840883968,0,0,0.785577949580009,0,0,0,0,0.857718530119876,0,0.23248285073625,1.56472445072321,0,0,0,0,0,4.14162002556979,4.4310970474762,0,0,0,0,0,0,0,1.29485767437579,2.25858175083743,1.1598144313382,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,1.17785080268967,0,0.4226557275834,0.169927114687817,0,0,0,1.60698544745092,0,0,0.730336388246517,0,0.286679166302903,2.20880187070458,0.0679914901909147,0,0,0,0,0,0,0,0.126698501011437,0,0,1.47031839255752,0,0.0757786982182394,0,0,0.413731983447581,0.213233981900981,0.476128862927481,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p@chr3:147128789..147128812,+ | |||
}} |
Revision as of 21:51, 21 January 2014
Short description: | p@chr3:147128789..147128812, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:147128789..147128812, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.32e-22 | 23 |
hair follicle cell | 1.98e-13 | 5 |
glial cell (sensu Vertebrata) | 6.82e-11 | 15 |
glial cell | 6.82e-11 | 15 |
glioblast | 6.82e-11 | 15 |
glioblast (sensu Vertebrata) | 6.82e-11 | 15 |
skeletal muscle myoblast | 7.63e-11 | 4 |
neuron associated cell | 1.48e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 1.48e-09 | 17 |
cell of skeletal muscle | 2.07e-09 | 9 |
nucleus pulposus cell of intervertebral disc | 4.32e-09 | 3 |
hair follicle dermal papilla cell | 6.98e-09 | 3 |
stem cell of epidermis | 6.98e-09 | 3 |
leptomeningeal cell | 6.98e-09 | 3 |
astrocyte of the cerebellum | 3.22e-08 | 3 |
neural cell | 1.29e-07 | 25 |
central nervous system pericyte | 9.83e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.74e-13 | 5 |
myotonic disease | 1.74e-13 | 5 |
muscle tissue disease | 1.74e-13 | 5 |
myopathy | 1.74e-13 | 5 |
muscular disease | 1.74e-13 | 5 |
myotonic dystrophy | 1.74e-13 | 5 |