FFCP PHASE1:Hg19::chr4:7846380..7846392,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:7846380..7846392,- | |||
|id=chr4:7846380..7846392,- | |||
|ontology_enrichment_celltype=CL:0000359!7.42e-22!32;CL:0000222!1.46e-20!119;CL:0000192!7.83e-18!42;CL:0000514!7.83e-18!42;CL:0000187!1.11e-15!54;CL:0000183!7.30e-15!59;CL:0000680!2.03e-14!57;CL:0000056!2.03e-14!57;CL:0000355!2.03e-14!57;CL:0000055!5.78e-14!180;CL:0000393!2.74e-13!60;CL:0000211!2.74e-13!60;CL:0000077!4.28e-12!19;CL:0002539!9.09e-11!10;CL:0000220!1.34e-10!246;CL:0002321!2.21e-10!248;CL:0000548!4.16e-09!679;CL:0000004!4.16e-09!679;CL:0000255!4.16e-09!679;CL:0000076!4.71e-09!62;CL:0000012!6.31e-09!682;CL:0000213!1.46e-08!57;CL:0000215!1.46e-08!57;CL:0002494!2.23e-08!16;CL:0002594!7.35e-08!4;CL:1000306!1.20e-07!4;CL:0002547!1.20e-07!4;CL:0000569!2.04e-07!4;CL:0000011!2.04e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.28e-26;32!CL:0002594;2.12e-18;4!CL:0000192;1.93e-15;43!CL:0002539;4.37e-13;10!CL:0000511;9.82e-10;1!CL:0002625;9.82e-10;1!CL:0000216;9.82e-10;1!CL:1000306;2.55e-09;4!CL:0002547;2.55e-09;4!CL:0000569;7.28e-09;4!CL:0000187;8.35e-09;55!CL:0002595;1.50e-07;5!CL:0000393;1.85e-07;61!CL:0000211;1.85e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.48e-28,32;CL:0000192,8.61e-21,43;CL:0000514,8.61e-21,43;CL:0002594,3.53e-18,4;CL:0000187,7.39e-16,55;CL:0000680,6.08e-15,58;CL:0000056,6.08e-15,58;CL:0000355,6.08e-15,58;CL:0000393,4.06e-14,61;CL:0000211,4.06e-14,61;CL:0002539,2.86e-13,10;CL:0000222,1.70e-10,121;CL:0000511,9.44e-10,1;CL:0002625,9.44e-10,1;CL:0000216,9.44e-10,1;CL:1000306,2.55e-09,4;CL:0002547,2.55e-09,4;CL:0000569,1.27e-08,4;CL:0000011,1.27e-08,4;CL:0002595,1.50e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;1.93e-15;43!UBERON:0005425;2.88e-09;1!CL:0000011;7.28e-09;4!CL:0000355;4.83e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!5.39e-13!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.22e-14;14!DOID:2513;2.88e-09;1!DOID:120;3.48e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.40e-14,14;DOID:2513,3.53e-09,1;DOID:120,2.82e-07,27;DOID:193,9.26e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0004872!3.53e-28!84;UBERON:0001637!8.63e-28!42;UBERON:0003509!8.63e-28!42;UBERON:0004572!8.63e-28!42;UBERON:0001981!2.52e-25!60;UBERON:0007500!2.52e-25!60;UBERON:0004537!2.52e-25!60;UBERON:0006965!2.52e-25!60;UBERON:0002049!1.66e-22!79;UBERON:0007798!1.66e-22!79;UBERON:0004535!4.00e-22!110;UBERON:0001009!3.86e-21!113;UBERON:0004573!1.08e-20!33;UBERON:0004571!1.08e-20!33;UBERON:0000055!1.56e-20!69;UBERON:0003914!1.11e-17!118;UBERON:0000947!2.62e-13!21;UBERON:0010191!2.62e-13!21;UBERON:0001134!6.13e-13!61;UBERON:0002036!6.13e-13!61;UBERON:0003082!6.13e-13!61;UBERON:0002385!2.84e-12!63;UBERON:0001015!2.84e-12!63;UBERON:0000383!2.84e-12!63;UBERON:0000490!6.55e-11!138;UBERON:0004237!9.09e-11!10;UBERON:0004695!9.09e-11!10;UBERON:0002111!9.09e-11!10;UBERON:0004178!9.09e-11!10;UBERON:0004290!2.89e-10!70;UBERON:0000486!3.44e-09!82;UBERON:0000914!5.96e-09!83;UBERON:0002329!5.96e-09!83;UBERON:0003077!5.96e-09!83;UBERON:0003059!5.96e-09!83;UBERON:0007282!5.96e-09!83;UBERON:0009618!5.96e-09!83;UBERON:0007285!5.96e-09!83;UBERON:0000025!3.08e-08!194;UBERON:0001135!4.87e-08!15;UBERON:0001310!7.35e-08!4;UBERON:0000415!1.20e-07!4;UBERON:0007240!1.20e-07!4;UBERON:0005742!1.20e-07!4;UBERON:0005734!1.20e-07!4;UBERON:0004664!1.20e-07!4;UBERON:0004663!1.20e-07!4;UBERON:0000992!2.43e-07!13;UBERON:0000119!3.16e-07!312;UBERON:0000483!4.81e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.28e-21;33!UBERON:0004571;8.28e-21;33!UBERON:0001637;1.22e-18;42!UBERON:0003509;1.22e-18;42!UBERON:0004572;1.22e-18;42!UBERON:0001310;2.12e-18;4!UBERON:0002118;7.66e-15;5!UBERON:0000947;1.69e-13;21!UBERON:0010191;1.69e-13;21!UBERON:0004237;4.37e-13;10!UBERON:0004695;4.37e-13;10!UBERON:0002111;4.37e-13;10!UBERON:0004178;4.37e-13;10!UBERON:0007500;8.09e-13;56!UBERON:0001981;8.09e-13;56!UBERON:0004537;8.09e-13;56!UBERON:0000055;9.06e-12;65!UBERON:0000992;5.89e-10;13!UBERON:0001136;9.82e-10;1!UBERON:0001343;9.82e-10;1!UBERON:0004910;9.82e-10;1!UBERON:0004813;9.82e-10;1!UBERON:0000991;2.16e-09;21!UBERON:0004797;2.55e-09;4!UBERON:0000415;2.55e-09;4!UBERON:0007240;2.55e-09;4!UBERON:0005742;2.55e-09;4!UBERON:0005734;2.55e-09;4!UBERON:0004664;2.55e-09;4!UBERON:0004663;2.55e-09;4!UBERON:0000941;2.88e-09;1!UBERON:0001785;2.88e-09;1!UBERON:0002464;2.88e-09;1!UBERON:0004904;2.88e-09;1!UBERON:0001021;2.88e-09;1!UBERON:0001135;8.88e-09;15!UBERON:0010260;1.76e-08;9!UBERON:0002049;1.78e-08;75!UBERON:0007798;1.78e-08;75!UBERON:0003914;8.71e-08;74!UBERON:0003834;1.50e-07;5!UBERON:0001533;1.50e-07;5!UBERON:0004535;6.28e-07;109 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.26e-30,42;UBERON:0003509,3.26e-30,42;UBERON:0004572,3.26e-30,42;UBERON:0004872,5.82e-25,83;UBERON:0007500,2.53e-24,59;UBERON:0001981,2.53e-24,59;UBERON:0004537,2.53e-24,59;UBERON:0006965,2.53e-24,59;UBERON:0004573,3.43e-23,33;UBERON:0004571,3.43e-23,33;UBERON:0000055,8.94e-21,68;UBERON:0001310,3.53e-18,4;UBERON:0002049,8.61e-18,78;UBERON:0007798,8.61e-18,78;UBERON:0004535,5.75e-16,109;UBERON:0001009,1.84e-15,112;UBERON:0002118,4.03e-15,5;UBERON:0003914,1.12e-14,117;UBERON:0001134,7.35e-14,62;UBERON:0002036,7.35e-14,62;UBERON:0003082,7.35e-14,62;UBERON:0000947,1.25e-13,21;UBERON:0010191,1.25e-13,21;UBERON:0002385,2.27e-13,64;UBERON:0001015,2.27e-13,64;UBERON:0000383,2.27e-13,64;UBERON:0004237,2.86e-13,10;UBERON:0004695,2.86e-13,10;UBERON:0002111,2.86e-13,10;UBERON:0004178,2.86e-13,10;UBERON:0002329,7.18e-12,71;UBERON:0003059,7.18e-12,71;UBERON:0007282,7.18e-12,71;UBERON:0004290,7.18e-12,71;UBERON:0009618,7.18e-12,71;UBERON:0003077,1.11e-11,72;UBERON:0007285,1.11e-11,72;UBERON:0007524,1.70e-11,73;UBERON:0007503,1.22e-10,78;UBERON:0000992,4.65e-10,13;UBERON:0000486,6.89e-10,83;UBERON:0001136,9.44e-10,1;UBERON:0001343,9.44e-10,1;UBERON:0004910,9.44e-10,1;UBERON:0005154,9.44e-10,1;UBERON:0005295,9.44e-10,1;UBERON:0004813,9.44e-10,1;UBERON:0005297,9.44e-10,1;UBERON:0005294,9.44e-10,1;UBERON:0010141,9.44e-10,1;UBERON:0005891,9.44e-10,1;UBERON:0000991,1.79e-09,21;UBERON:0009196,1.79e-09,21;UBERON:0009117,1.79e-09,21;UBERON:0005564,1.79e-09,21;UBERON:0000941,2.35e-09,1;UBERON:0001785,2.35e-09,1;UBERON:0002464,2.35e-09,1;UBERON:0004904,2.35e-09,1;UBERON:0001021,2.35e-09,1;UBERON:0003902,2.35e-09,1;UBERON:0005425,2.35e-09,1;UBERON:0000415,2.55e-09,4;UBERON:0007240,2.55e-09,4;UBERON:0005742,2.55e-09,4;UBERON:0005734,2.55e-09,4;UBERON:0004664,2.55e-09,4;UBERON:0004663,2.55e-09,4;UBERON:0004176,4.91e-09,22;UBERON:0001135,6.73e-09,15;UBERON:0010260,2.20e-08,9;UBERON:0003081,2.48e-08,203;UBERON:0000025,9.41e-08,192;UBERON:0000926,1.33e-07,315;UBERON:0004120,1.33e-07,315;UBERON:0006603,1.33e-07,315;UBERON:0003834,1.50e-07,5;UBERON:0001533,1.50e-07,5;UBERON:0005256,1.90e-07,122;UBERON:0000490,6.58e-07,148 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0.123121058076788,0.408001382488506,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.838998872419812,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0.22452937262617,0.112611480483322,1.53316637465883,0,0.183201743930407,0,0,0,0.496971951695318,0.506522046658319,5.03154887090231,2.29469296599051,0.354668382198357,0,0,0.74000264525148,0,0.134710672069688,0.326923806226917,0.151357427644931,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.226864366320042,0.358779271377724,0,0,0.600182192168805,0.206105058476878,0.257640540045629,0,0,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0,0,0.387815147273333,0,0,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0.718874566474748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0,0,0,0.355123450626254,0.246381468041427,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0,0,0.15350367472613,0.275673144969061,0,0,0,0,0.165284915360978,0,0,0,0.929691098594572,4.40737285562896,1.3940745403212,1.54016790088044,0.532306030317022,1.73986598415015,0.55597265731176,3.14874750832381,0,0,0,0.255897791311334,0,1.27281299170375,0,0.179872457583315,0,0,0.808729926293264,0,0.842516912477962,0,0.731140468893853,2.11300293513511,0,0,0,2.75682671773062,0,0,0,0,1.42037263873893,0.6196469961995,1.12678241012897,0.286822704408103,0.392996164052485,1.07001315444375,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0,0,1.24415835064723,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0,0,0,0,0,0,0.0979923974143777,0.870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621262677827163,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0.457680136793847,1.05861646634267,0.466311601748341,1.03498604992744,0.63718706865481,0,0.310525913752519,1.24411862352257,0.797525143673985,1.5652351854352,0.150257608997218,0.380805212168795,0,1.63663793282303,0.429642228169954,1.39210127963548,1.59238355479446,0,0,0,0,0.385239660814607,0.643324774124777,0.260994291965212,0,0,0.489473409012935,0.537266523244462,0.617602894321944,0.438568099157414,0.353378291891762,0.964570191354574,1.01365464391844,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0.533636729388577,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:7846380..7846392,- | |||
}} | |||
Revision as of 00:07, 22 January 2014
| Short description: | p@chr4:7846380..7846392, - |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | No |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr4:7846380..7846392, - |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| vascular associated smooth muscle cell | 1.48e-28 | 32 |
| smooth muscle cell | 8.61e-21 | 43 |
| smooth muscle myoblast | 8.61e-21 | 43 |
| smooth muscle cell of the umbilical artery | 3.53e-18 | 4 |
| muscle cell | 7.39e-16 | 55 |
| muscle precursor cell | 6.08e-15 | 58 |
| myoblast | 6.08e-15 | 58 |
| multi-potent skeletal muscle stem cell | 6.08e-15 | 58 |
| electrically responsive cell | 4.06e-14 | 61 |
| electrically active cell | 4.06e-14 | 61 |
| aortic smooth muscle cell | 2.86e-13 | 10 |
| mesodermal cell | 1.70e-10 | 121 |
| androgen binding protein secreting cell | 9.44e-10 | 1 |
| seminiferous tubule epithelial cell | 9.44e-10 | 1 |
| Sertoli cell | 9.44e-10 | 1 |
| fibroblast of tunica adventitia of artery | 2.55e-09 | 4 |
| fibroblast of the aortic adventitia | 2.55e-09 | 4 |
| cardiac mesenchymal cell | 1.27e-08 | 4 |
| migratory trunk neural crest cell | 1.27e-08 | 4 |
| smooth muscle cell of the subclavian artery | 1.50e-07 | 5 |
| Ontology term | p-value | n |
|---|
