FFCP PHASE1:Hg19::chr4:39460520..39460574,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6133 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10369 | |||
|TSSclassifier=strong | |||
|UniProt=P32969,B4E1M5,D6RAN4,E7ESE0,Q53Z07 | |||
|association_with_transcript=0bp_to_ENST00000295955,ENST00000394452,ENST00000437992,ENST00000503040,ENST00000504470,ENST00000508595,ENST00000511075,ENST00000514842,NM_000661,uc003guc.2,uc003gud.1,uc011byk.1,uc011byl.1_5end | |||
|description=CAGE_peak_1_at_RPL9_5end | |||
|id=chr4:39460520..39460574,- | |||
|ontology_enrichment_celltype=CL:0000144!2.43e-49!625;CL:0000012!6.31e-49!682;CL:0000548!1.50e-46!679;CL:0000004!1.50e-46!679;CL:0000255!1.50e-46!679;CL:0002371!1.56e-42!591;CL:0000003!3.35e-40!722;CL:0000034!4.77e-23!444;CL:0000723!3.54e-20!436;CL:0000048!1.14e-19!430;CL:0000063!1.42e-19!578;CL:0000393!5.77e-13!60;CL:0000211!5.77e-13!60;CL:0000183!1.66e-12!59;CL:0000055!2.30e-12!180;CL:0002321!2.50e-12!248;CL:0000220!9.06e-12!246;CL:0000187!1.47e-11!54;CL:0000680!2.77e-11!57;CL:0000056!2.77e-11!57;CL:0000355!2.77e-11!57;CL:0000222!1.49e-10!119;CL:0000192!9.33e-10!42;CL:0000514!9.33e-10!42;CL:0002320!2.51e-09!365;CL:0000134!2.92e-09!358;CL:0000219!6.48e-09!390;CL:0000359!2.93e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000187;3.00e-07;55!CL:0000393;4.62e-07;61!CL:0000211;4.62e-07;61!CL:0000192;8.12e-07;43!CL:0000359;9.11e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,4.51e-23,441;CL:0000723,3.32e-20,433;CL:0000048,1.07e-19,427;CL:0000393,1.04e-12,61;CL:0000211,1.04e-12,61;CL:0002321,1.50e-12,250;CL:0000187,2.62e-11,55;CL:0000680,4.75e-11,58;CL:0000056,4.75e-11,58;CL:0000355,4.75e-11,58;CL:0000222,9.30e-11,121;CL:0000192,1.71e-09,43;CL:0000514,1.71e-09,43;CL:0002320,2.10e-09,361;CL:0000134,2.43e-09,354;CL:0000219,5.58e-09,386;CL:0000359,2.93e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;8.12e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.10e-11!83;UBERON:0002329!1.10e-11!83;UBERON:0003077!1.10e-11!83;UBERON:0003059!1.10e-11!83;UBERON:0007282!1.10e-11!83;UBERON:0009618!1.10e-11!83;UBERON:0007285!1.10e-11!83;UBERON:0004290!2.08e-11!70;UBERON:0000486!1.32e-10!82;UBERON:0001134!3.22e-09!61;UBERON:0002036!3.22e-09!61;UBERON:0003082!3.22e-09!61;UBERON:0002384!3.90e-08!375;UBERON:0002385!4.95e-08!63;UBERON:0001015!4.95e-08!63;UBERON:0000383!4.95e-08!63;UBERON:0001637!1.00e-07!42;UBERON:0003509!1.00e-07!42;UBERON:0004572!1.00e-07!42;UBERON:0001981!1.50e-07!60;UBERON:0007500!1.50e-07!60;UBERON:0004537!1.50e-07!60;UBERON:0006965!1.50e-07!60;UBERON:0002049!4.29e-07!79;UBERON:0007798!4.29e-07!79;UBERON:0005256!6.67e-07!143 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.17e-12,78;UBERON:0002329,3.29e-11,71;UBERON:0003059,3.29e-11,71;UBERON:0007282,3.29e-11,71;UBERON:0004290,3.29e-11,71;UBERON:0009618,3.29e-11,71;UBERON:0007524,8.11e-11,73;UBERON:0003077,8.68e-11,72;UBERON:0007285,8.68e-11,72;UBERON:0000486,1.92e-10,83;UBERON:0001134,4.89e-09,62;UBERON:0002036,4.89e-09,62;UBERON:0003082,4.89e-09,62;UBERON:0000490,3.14e-08,148;UBERON:0002384,3.35e-08,371;UBERON:0002385,7.07e-08,64;UBERON:0001015,7.07e-08,64;UBERON:0000383,7.07e-08,64;UBERON:0007500,7.60e-08,59;UBERON:0001981,7.60e-08,59;UBERON:0004537,7.60e-08,59;UBERON:0006965,7.60e-08,59;UBERON:0001637,1.00e-07,42;UBERON:0003509,1.00e-07,42;UBERON:0004572,1.00e-07,42;UBERON:0002049,2.50e-07,78;UBERON:0007798,2.50e-07,78;UBERON:0000055,7.66e-07,68 | |||
|phase1_expression=34.1555353028646,32.9714806792114,29.318516051962,44.0322512753774,37.9916930263195,66.297727831628,78.5229622321763,78.9649841783539,37.0883592043771,146.703160091401,126.999812570982,61.3820255685784,49.8519588851777,47.1549804777778,55.6747591222898,62.5262386200151,54.8452020501819,51.1217063271161,49.7691454766317,98.0043622291232,86.4962930875633,55.1680309801435,50.377533735066,52.012281527696,50.7192263963003,44.7018423625515,48.2751465965681,50.7684539473231,90.8671479520968,53.3522863355126,44.5870435150299,188.48135101818,118.373926079852,114.623743151704,67.7838005077639,72.7906470335598,82.2081230137572,59.2775087129109,56.55353418658,55.5547829032581,24.6307021663917,16.518576966968,15.9696851933196,24.5723023537464,29.8521995514159,32.5062641991674,41.8372266430232,35.360438369877,53.2694957939578,42.8661664560004,41.7541951642434,83.0052626908934,58.9515114059618,50.9932900031223,50.1078000399065,33.5071364385836,40.9359225086769,75.2823672891033,54.1768489496498,60.9765151444578,62.015701202507,29.6866170168045,29.7200849856231,40.9175760511386,63.8460324982885,53.3342111209671,59.7909359035752,37.9385484537682,42.7615993104565,64.9394645668299,59.3291512580701,75.1286377414632,116.458158578245,62.7428200346467,57.4031609905618,75.267453737507,49.4245977044578,54.2138583157838,37.1276105270255,58.427612466956,56.6912530017407,60.4618348960938,52.7988733383968,43.1449502897084,72.0502495629479,58.035310269045,59.6590020683659,45.4054427564042,51.5615000772192,55.3351177630511,104.735186316139,98.0686106249468,86.0114763281765,83.2679370047863,135.643072241532,66.8995575328696,66.6846120685894,65.2397866163613,64.5588706858459,42.7997428200136,86.3694006579015,99.8974870100287,74.0341567950063,35.0942939188297,80.1328068331557,73.5492530017622,58.4936345732434,29.2048208974539,32.9050149326492,30.0921365424727,36.2018523299461,39.1234165742321,70.8809771914649,82.9376567078111,63.7666695210358,32.6330906968991,87.374272541238,82.4705869158312,74.3877894537338,44.9177234196976,59.8996777547905,61.7793828891443,52.8518667962982,49.2748452944511,51.2215978864618,29.5971565055021,51.7310638060259,78.6266298576457,64.7205273796088,67.0536989977359,36.5710299470943,64.3872825315491,62.3969301796428,59.998899295838,60.1605492763067,34.3286249937152,43.7407270878105,29.6847270884608,44.3368292499478,49.0021968392266,43.0390449896318,17.7476647299401,101.274090145327,137.190243830239,15.5782748954248,13.5821195093428,19.677778156792,54.375862341618,70.9273689367359,82.4635652951634,81.0950622056157,97.2065092469921,77.0651913568859,45.7899432958448,75.929397953993,28.3371583198269,71.4762785555892,28.1674267494568,27.03823596419,21.0873986041742,83.7884979587026,224.280271186961,42.4667980133815,102.577999416497,49.4186588207873,52.5082402310389,41.0888751905891,48.5355480883119,96.5894816035064,81.6368467228591,61.5557859606168,36.8985168820977,58.1670396222488,117.309300026342,34.7880366186723,71.6728696021521,40.517209328845,50.1964086310424,47.1708948323815,72.8880880184999,38.4296384626938,34.2867892299852,21.7847724779836,68.2983107393319,79.7694087193679,51.3101679716317,45.5178980339199,77.3260725051529,105.197945891818,160.873053675535,83.392363747905,97.4706338743248,112.177950447115,109.692080034456,52.0593136699978,62.5226675116899,25.7281195127656,24.9480600029231,22.5012905643487,97.3872657273688,46.7101792180555,85.6830820026197,49.9222894289137,38.2348479368172,43.458784467203,50.5704863068382,25.0897558374017,97.211380968138,63.5039310338571,47.6232977065405,49.5920648713375,64.8196767542309,60.800992250679,56.1656377299472,48.3903826462134,44.0506227149705,71.9085098089646,67.9046852716668,34.1505123962931,37.825177295602,55.0264868400752,71.9369981345351,74.776221208925,57.7849950958257,52.0945090328494,44.1679076899066,102.335939442731,82.1684563593209,93.6523179528318,73.3920269508823,93.6110356748581,105.843434131991,73.5312801950135,9.00537313470039,67.6861114627155,45.9724248751659,87.3474172820198,42.9453684144633,37.5943858874167,47.479172887046,47.0955263567322,45.9725627034977,53.3858892999967,44.6291630010144,49.6440306767126,47.323900304406,49.4564154598514,95.3644061863432,74.4948960509834,47.0427876433734,25.3510069643662,40.2959158837827,30.1302852407516,39.2902158479039,30.8700980743215,70.3428022223955,39.0711016054707,121.393893518229,101.835849052982,80.7371241782378,123.155539407303,133.111652515786,83.7121783746585,27.0117843591929,42.2671299248958,51.8275547462255,63.8920007355723,49.2758254287609,38.7200155000045,42.0658219426488,22.1595305478658,26.9104904910123,25.8618222382387,149.974134378843,76.9358147150777,111.718776627001,48.4511607822409,86.0276458001327,71.3091783247293,27.5891413221728,16.9933477645526,43.9535604946437,61.6833400624595,36.4840632602238,40.0036734040665,26.3572013635212,33.9930596909136,32.503764744314,62.621943056324,38.7442544618654,22.8661146104463,83.5376578372937,64.0861301184922,71.3581521037844,40.33277531642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| |||
|short_description=p1@RPL9 | |||
}} |
Revision as of 00:44, 22 January 2014
Short description: | p1@RPL9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPL9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000295955, ENST00000394452, ENST00000437992, ENST00000503040, ENST00000504470, ENST00000508595, ENST00000511075, ENST00000514842, NM_000661, uc003guc.2, uc003gud.1, uc011byk.1, uc011byl.1_5end |
EntrezGene: | RPL9 |
HGNC: | 10369 |
UniProt: | P32969B4E1M5D6RAN4E7ESE0Q53Z07 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 4.51e-23 | 441 |
somatic stem cell | 3.32e-20 | 433 |
multi fate stem cell | 1.07e-19 | 427 |
electrically responsive cell | 1.04e-12 | 61 |
electrically active cell | 1.04e-12 | 61 |
embryonic cell | 1.50e-12 | 250 |
muscle cell | 2.62e-11 | 55 |
muscle precursor cell | 4.75e-11 | 58 |
myoblast | 4.75e-11 | 58 |
multi-potent skeletal muscle stem cell | 4.75e-11 | 58 |
mesodermal cell | 9.30e-11 | 121 |
smooth muscle cell | 1.71e-09 | 43 |
smooth muscle myoblast | 1.71e-09 | 43 |
connective tissue cell | 2.10e-09 | 361 |
mesenchymal cell | 2.43e-09 | 354 |
motile cell | 5.58e-09 | 386 |
vascular associated smooth muscle cell | 2.93e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.17e-12 | 78 |
somite | 3.29e-11 | 71 |
presomitic mesoderm | 3.29e-11 | 71 |
presumptive segmental plate | 3.29e-11 | 71 |
dermomyotome | 3.29e-11 | 71 |
trunk paraxial mesoderm | 3.29e-11 | 71 |
dense mesenchyme tissue | 8.11e-11 | 73 |
paraxial mesoderm | 8.68e-11 | 72 |
presumptive paraxial mesoderm | 8.68e-11 | 72 |
multilaminar epithelium | 1.92e-10 | 83 |
skeletal muscle tissue | 4.89e-09 | 62 |
striated muscle tissue | 4.89e-09 | 62 |
myotome | 4.89e-09 | 62 |
unilaminar epithelium | 3.14e-08 | 148 |
connective tissue | 3.35e-08 | 371 |
muscle tissue | 7.07e-08 | 64 |
musculature | 7.07e-08 | 64 |
musculature of body | 7.07e-08 | 64 |
epithelial tube open at both ends | 7.60e-08 | 59 |
blood vessel | 7.60e-08 | 59 |
blood vasculature | 7.60e-08 | 59 |
vascular cord | 7.60e-08 | 59 |
artery | 1.00e-07 | 42 |
arterial blood vessel | 1.00e-07 | 42 |
arterial system | 1.00e-07 | 42 |
vasculature | 2.50e-07 | 78 |
vascular system | 2.50e-07 | 78 |
vessel | 7.66e-07 | 68 |