FFCP PHASE1:Hg19::chr4:48485220..48485230,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=201780 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22980 | |||
|TSSclassifier=strong | |||
|UniProt=Q96EP9 | |||
|association_with_transcript=-129bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_10_at_SLC10A4_5end | |||
|id=chr4:48485220..48485230,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.19e-20!8;CL:0002605!6.09e-20!3;CL:0002319!3.86e-18!25;CL:0000540!7.27e-18!6;CL:0000031!7.27e-18!6;CL:0000404!7.27e-18!6;CL:0000128!7.31e-15!7;CL:0000126!7.31e-15!7;CL:0000127!7.31e-15!7;CL:0002453!7.31e-15!7;CL:0000133!3.39e-13!59;CL:0000221!1.17e-10!71 | |||
|ontology_enrichment_celltype_v019=CL:0000333;1.81e-40;5!CL:0002321;2.57e-14;15!CL:0000540;1.50e-09;6!CL:0000404;1.50e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.57e-09,6;CL:0000031,1.57e-09,6;CL:0000404,1.57e-09,6;CL:0000133,3.34e-08,59;CL:0000047,1.80e-07,8;CL:0000221,6.64e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.50e-09;6!CL:0000133;7.46e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;5.98e-34;6!DOID:171;6.99e-21;10!DOID:3095;4.14e-10;22!DOID:2994;4.14e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,5.98e-34,6;DOID:171,6.99e-21,10;DOID:3095,4.14e-10,22;DOID:2994,4.14e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.47e-28!94;UBERON:0001016!6.47e-28!94;UBERON:0005743!3.64e-25!86;UBERON:0001017!8.33e-24!82;UBERON:0002020!5.34e-20!34;UBERON:0003528!5.34e-20!34;UBERON:0000956!1.97e-18!25;UBERON:0000203!1.97e-18!25;UBERON:0001049!6.15e-16!57;UBERON:0005068!6.15e-16!57;UBERON:0006241!6.15e-16!57;UBERON:0007135!6.15e-16!57;UBERON:0004121!2.10e-15!169;UBERON:0002616!2.52e-15!59;UBERON:0000924!5.96e-15!173;UBERON:0006601!5.96e-15!173;UBERON:0000955!8.12e-15!69;UBERON:0006238!8.12e-15!69;UBERON:0001869!3.17e-14!32;UBERON:0002791!9.14e-14!33;UBERON:0002148!1.04e-13!2;UBERON:0009662!1.04e-13!2;UBERON:0003075!2.17e-13!86;UBERON:0007284!2.17e-13!86;UBERON:0001893!2.48e-13!34;UBERON:0002346!1.13e-12!90;UBERON:0002780!7.10e-11!41;UBERON:0001890!7.10e-11!41;UBERON:0006240!7.10e-11!41;UBERON:0003080!1.37e-10!42;UBERON:0003056!1.92e-10!61;UBERON:0001950!2.04e-10!20;UBERON:0000033!7.86e-10!123;UBERON:0002619!1.82e-09!22;UBERON:0000988!1.94e-09!3;UBERON:0006331!1.94e-09!3;UBERON:0000153!3.08e-09!129;UBERON:0007811!3.08e-09!129;UBERON:0004733!1.42e-08!12;UBERON:0002028!1.42e-08!12;UBERON:0007277!1.42e-08!12;UBERON:0004732!6.36e-08!13;UBERON:0002298!1.28e-07!8;UBERON:0002902!1.64e-07!1;UBERON:0009899!1.64e-07!1;UBERON:0002581!1.75e-07!1;UBERON:0002022!1.99e-07!1;UBERON:0003076!7.01e-07!15;UBERON:0003057!7.01e-07!15;UBERON:0002680!7.11e-07!9;UBERON:0001895!7.11e-07!9;UBERON:0010092!7.11e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.81e-40;5!UBERON:0002410;1.81e-40;5!UBERON:0000010;4.59e-23;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.81e-40,5;UBERON:0002410,1.81e-40,5;UBERON:0000010,4.59e-23,8;UBERON:0001016,1.88e-09,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.500547425135725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0.476809736941136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69562028491704,0,3.71312769852847,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504143392443436,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@SLC10A4 | |||
}} |
Revision as of 00:59, 22 January 2014
Short description: | p10@SLC10A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SLC10A4_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | -129bp_to_ENST00000273861, NM_152679, uc003gyc.2_5end |
EntrezGene: | SLC10A4 |
HGNC: | 22980 |
UniProt: | Q96EP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.57e-09 | 6 |
neuroblast | 1.57e-09 | 6 |
electrically signaling cell | 1.57e-09 | 6 |
neurectodermal cell | 3.34e-08 | 59 |
neuronal stem cell | 1.80e-07 | 8 |
ectodermal cell | 6.64e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.81e-40 | 5 |
autonomic nervous system | 1.81e-40 | 5 |
peripheral nervous system | 4.59e-23 | 8 |
nervous system | 1.88e-09 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 5.98e-34 | 6 |
neuroectodermal tumor | 6.99e-21 | 10 |
germ cell and embryonal cancer | 4.14e-10 | 22 |
germ cell cancer | 4.14e-10 | 22 |