FFCP PHASE1:Hg19::chr4:151936416..151936444,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1742 | |||
|TSSclassifier=strong | |||
|UniProt=E9PEM5,P50851,Q6P1X2 | |||
|association_with_transcript=0bp_to_ENST00000507224,ENST00000510413,ENST00000514435,NM_001199282,uc003ilu.3,uc003ilx.1_5end | |||
|description=CAGE_peak_2_at_LRBA_5end | |||
|id=chr4:151936416..151936444,- | |||
|ontology_enrichment_celltype=CL:0000542!4.77e-21!53;CL:0000051!4.77e-21!53;CL:0000838!7.39e-21!52;CL:0000791!8.38e-11!18;CL:0000789!8.38e-11!18;CL:0002420!8.38e-11!18;CL:0002419!8.38e-11!18;CL:0000790!8.38e-11!18;CL:0000084!1.36e-10!25;CL:0000827!1.36e-10!25;CL:0000945!6.90e-10!24;CL:0000826!6.90e-10!24;CL:0000066!3.30e-08!254;CL:0000236!1.64e-07!14;CL:0000625!1.72e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.13e-12;53!CL:0000791;6.78e-11;18!CL:0000789;6.78e-11;18!CL:0002419;6.78e-11;18!CL:0000084;1.03e-10;25!CL:0000945;5.24e-10;24!CL:0000625;1.53e-07;11!CL:0000236;2.56e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.09e-21,53;CL:0000051,4.09e-21,53;CL:0000838,6.34e-21,52;CL:0000791,7.79e-11,18;CL:0000789,7.79e-11,18;CL:0002420,7.79e-11,18;CL:0002419,7.79e-11,18;CL:0000790,7.79e-11,18;CL:0000084,1.27e-10,25;CL:0000827,1.27e-10,25;CL:0000945,6.46e-10,24;CL:0000826,6.46e-10,24;CL:0000066,1.52e-08,253;CL:0000236,1.56e-07,14;CL:0000625,1.64e-07,11;CL:0002076,5.28e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000051;1.13e-12;53!CL:0000790;6.78e-11;18 | |||
|ontology_enrichment_disease=DOID:305!5.21e-12!106;DOID:162!7.64e-12!235;DOID:14566!1.65e-10!239;DOID:0050687!1.06e-08!143;DOID:0050686!3.95e-08!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.92e-12,106;DOID:162,8.02e-12,235;DOID:14566,1.52e-10,239;DOID:0050687,8.34e-09,143;DOID:0050686,3.56e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.22e-09!155;UBERON:0001555!3.22e-09!155;UBERON:0007026!3.22e-09!155;UBERON:0004119!4.46e-09!169;UBERON:0000925!4.46e-09!169;UBERON:0006595!4.46e-09!169;UBERON:0004921!8.79e-09!129;UBERON:0004185!8.79e-09!129;UBERON:0001004!4.74e-08!72 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,5.72e-09,145;UBERON:0001555,5.72e-09,145;UBERON:0007026,5.72e-09,145;UBERON:0004921,6.05e-09,118;UBERON:0004119,1.43e-08,160;UBERON:0000925,1.43e-08,160;UBERON:0006595,1.43e-08,160;UBERON:0001004,3.40e-07,74;UBERON:0001041,5.30e-07,87 | |||
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| |||
|short_description=p2@LRBA | |||
}} |
Revision as of 03:27, 22 January 2014
Short description: | p2@LRBA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRBA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000507224, ENST00000510413, ENST00000514435, NM_001199282, uc003ilu.3, uc003ilx.1_5end |
EntrezGene: | LRBA |
HGNC: | 1742 |
UniProt: | E9PEM5P50851Q6P1X2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.09e-21 | 53 |
common lymphoid progenitor | 4.09e-21 | 53 |
lymphoid lineage restricted progenitor cell | 6.34e-21 | 52 |
mature alpha-beta T cell | 7.79e-11 | 18 |
alpha-beta T cell | 7.79e-11 | 18 |
immature T cell | 7.79e-11 | 18 |
mature T cell | 7.79e-11 | 18 |
immature alpha-beta T cell | 7.79e-11 | 18 |
T cell | 1.27e-10 | 25 |
pro-T cell | 1.27e-10 | 25 |
lymphocyte of B lineage | 6.46e-10 | 24 |
pro-B cell | 6.46e-10 | 24 |
epithelial cell | 1.52e-08 | 253 |
B cell | 1.56e-07 | 14 |
CD8-positive, alpha-beta T cell | 1.64e-07 | 11 |
endo-epithelial cell | 5.28e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
digestive system | 5.72e-09 | 145 |
digestive tract | 5.72e-09 | 145 |
primitive gut | 5.72e-09 | 145 |
subdivision of digestive tract | 6.05e-09 | 118 |
endoderm-derived structure | 1.43e-08 | 160 |
endoderm | 1.43e-08 | 160 |
presumptive endoderm | 1.43e-08 | 160 |
respiratory system | 3.40e-07 | 74 |
foregut | 5.30e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.92e-12 | 106 |
cancer | 8.02e-12 | 235 |
disease of cellular proliferation | 1.52e-10 | 239 |
cell type cancer | 8.34e-09 | 143 |
organ system cancer | 3.56e-08 | 137 |