FFCP PHASE1:Hg19::chr5:64859094..64859136,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23398 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28954 | |||
|TSSclassifier=strong | |||
|UniProt=D6RHV0,D6RA12,D6RDA4,D6RB19,F5H7P7,B4DWR9,Q96BP3 | |||
|association_with_transcript=0bp_to_ENST00000503435,ENST00000510930,ENST00000511908,ENST00000515447,ENST00000535264,ENST00000538977,NM_015342,uc003jtv.3,uc011cqv.1,uc011cqw.1_5end | |||
|coexpression_cluster_id=C2295 | |||
|description=CAGE_peak_1_at_PPWD1_5end | |||
|id=chr5:64859094..64859136,+ | |||
|ontology_enrichment_celltype=CL:0000542!9.58e-16!53;CL:0000051!9.58e-16!53;CL:0000838!1.88e-15!52;CL:0000037!1.28e-13!172;CL:0000566!1.28e-13!172;CL:0002032!1.39e-12!165;CL:0000837!1.39e-12!165;CL:0000988!7.48e-12!182;CL:0000791!1.20e-10!18;CL:0000789!1.20e-10!18;CL:0002420!1.20e-10!18;CL:0002419!1.20e-10!18;CL:0000790!1.20e-10!18;CL:0000084!3.43e-10!25;CL:0000827!3.43e-10!25;CL:0002031!3.50e-10!124;CL:0000738!1.44e-09!140;CL:0002087!1.75e-09!119;CL:0000625!5.99e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.23e-10;18!CL:0000789;1.23e-10;18!CL:0002419;1.23e-10;18!CL:0000084;3.70e-10;25!CL:0000542;1.85e-09;53!CL:0000625;6.10e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.58e-16,53;CL:0000051,9.58e-16,53;CL:0000838,1.88e-15,52;CL:0000037,1.78e-13,168;CL:0002032,1.92e-12,161;CL:0000837,1.92e-12,161;CL:0000988,3.95e-12,177;CL:0000791,1.20e-10,18;CL:0000789,1.20e-10,18;CL:0002420,1.20e-10,18;CL:0002419,1.20e-10,18;CL:0000790,1.20e-10,18;CL:0000084,3.43e-10,25;CL:0000827,3.43e-10,25;CL:0002031,4.53e-10,120;CL:0000738,1.94e-09,136;CL:0002087,2.26e-09,115;CL:0000625,5.99e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.23e-10;18!CL:0000051;1.85e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.75e-13!115;UBERON:0001049!6.81e-08!57;UBERON:0005068!6.81e-08!57;UBERON:0006241!6.81e-08!57;UBERON:0007135!6.81e-08!57;UBERON:0002780!3.08e-07!41;UBERON:0001890!3.08e-07!41;UBERON:0006240!3.08e-07!41;UBERON:0003080!9.01e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.59e-12,114;UBERON:0001049,2.52e-08,56;UBERON:0005068,2.52e-08,56;UBERON:0006241,2.52e-08,56;UBERON:0007135,2.52e-08,56;UBERON:0000073,1.60e-07,53;UBERON:0002616,1.60e-07,53;UBERON:0002780,3.08e-07,41;UBERON:0001890,3.08e-07,41;UBERON:0003080,3.08e-07,41;UBERON:0006240,3.08e-07,41 | |||
|phase1_expression=19.9846217197612,13.7024335290229,18.4650269365722,7.00513088471913,11.1740273606822,13.0850778615055,17.7309914717817,11.370957721683,15.4099520637905,5.6518805395347,0.697801167972428,4.36882744260345,4.74780560811216,24.5057378860892,16.5698687863958,20.842079540005,17.4781413126953,17.527442169297,20.9811103479918,6.64853713614655,3.87601313364081,3.76145665773705,24.9025308804019,20.6680381860055,21.3422487311165,28.9606807784735,30.9519222226295,30.6972047123349,9.04737836752479,28.4033754591937,13.1593704818665,10.1136334692682,4.51808878167375,4.43704812200145,29.9023394239964,23.3157541279371,21.139231632109,23.8218025668707,29.0789448831705,24.7392392616071,29.3329271254301,27.5309616116133,21.3787721136375,16.1392045045317,18.1380452970629,18.436388650274,14.6430293250581,16.8578834088949,14.5561994320699,10.3569261235974,18.4435708700952,19.1550606209754,24.8216890130365,25.819387343353,23.0225027210381,15.0593871634084,16.3743690034707,23.5959658667339,10.7129362329816,18.2929545433373,23.0161365287655,15.1731598085889,24.5340298874607,14.9178662686443,15.6712988859435,14.7520158419696,19.3074897188628,14.0699252543776,23.4667313289091,29.9720605693061,18.7673845816344,13.6262725315399,18.6712808590122,29.3644847973599,24.8747030959101,27.884599852614,24.4876415899359,23.127241497592,29.0913311921715,31.0663890677961,31.8266683518544,30.5049136786939,47.5189860045571,43.1449502897084,36.4698794084057,47.7937849274488,47.2467264702495,33.33564151736,41.6458269854463,45.7945802176975,19.3532409497212,24.0767247642085,30.1995850218931,35.686258716337,22.4203425192614,27.9187129861582,50.3577011491413,38.122043986669,30.2234203529279,86.4354181169806,48.2364954617714,49.2385717964123,46.7584148178987,57.0421539252089,53.9128810678952,43.4206433383897,58.7644384370084,24.9778073465067,32.3847775424097,27.4611300688139,29.8458019208716,66.9445128047971,67.0255265492513,84.2753608482596,41.8142095219907,60.5071890005003,47.1361207130363,45.3588228037071,73.6287303776753,42.0506346907808,59.8996777547905,48.4730542668671,67.60822846592,73.0803549691729,39.9778324967507,50.6703319374196,44.3409118337365,44.7566969958906,36.906747018124,39.3922378561213,41.4471672733735,13.4140171940727,13.1698438698836,16.2647618573055,10.5280961233537,19.1197405028287,20.6774346233286,17.0322204605923,36.3959046081661,18.4035399893928,17.7426267100115,19.7778404001546,1.82147644146271,4.44941331341315,20.1219384065904,19.5025305775179,16.8856609858959,25.0415155520609,21.7358066096449,34.5455476236495,8.54678351676832,5.16140757063675,7.28995053375948,2.82653970962005,6.71199097935849,12.9305479711832,7.31482382878837,24.8080088802556,23.4805733373229,24.7693253445856,9.26507429351038,6.0821768457481,13.9115372802457,15.8095124548724,9.72170337458112,32.1479021822687,26.7189953425142,24.098856823431,9.19899824795299,0.949265659568129,11.1753063797548,25.038279312852,19.3890132074163,3.05265836499774,13.9152146474689,16.9684885630537,39.8551634247789,36.7150874558482,18.4427558743146,3.92474320099615,6.4049397437823,8.88003174301776,25.5193049027808,18.994204761826,17.4904236331401,8.47601594811616,15.55674996096,4.45210720484214,12.4864030732128,9.12754914471119,14.0481759718693,19.1418232789337,16.8347862142857,23.0339322991688,29.1940464894497,17.6881416928946,24.4882101386564,17.8200428592308,16.0723504031062,1.82032272387605,2.15585442544872,29.6271560559157,21.6455039378498,24.9357703935765,12.2913733846635,10.1140972613676,15.4745200673795,15.8805056424029,28.8817313459068,21.9964110483124,25.0079643368283,27.9084719358494,27.5150253066632,37.8731593867075,17.3088676388379,36.6244640963548,22.8002592077205,31.5542217805143,30.5605663492434,37.6635312387832,35.5009592516614,19.4451549579346,12.5474838309761,14.4945639872473,18.5467362001768,10.8985746247821,27.8100049975478,30.7469062505846,26.8408008028587,22.8054321033815,20.6903097718015,18.6138453128673,7.8224766164908,9.00537313470039,2.76269842704961,21.825292617503,18.0469870417396,11.5940664039047,11.8009283054671,16.1477390021933,12.1323370005633,12.4191283132672,11.8635309555548,9.842685495692,9.8110732562673,8.84918460976698,4.42893272774789,2.80483547606892,2.8810180793198,2.94017422771084,21.5483559197112,17.6908899001973,25.4039659873004,38.4072896490746,33.57584372227,17.6714844607481,9.8775256867763,6.74410519545717,17.0899253099772,22.4064037283642,4.88712457965487,3.11980435583874,7.21656710126366,23.0701505900403,13.2671824486478,9.67255199999195,7.40776820122577,21.308465050275,4.74122638775565,10.3018339451385,26.0990026452641,17.0823113551644,17.2412148254925,16.8720901176199,23.0135515632438,22.2586902670547,22.1209551076035,21.5069114500332,5.36735750831296,49.2663237895943,27.2069661100868,25.501358211515,26.08571156847,24.6172745181441,18.4778872390212,9.54971063895694,5.86087236050235,1.71072446022705,12.9562640806188,12.6144084294445,14.0054951988983,6.839996145067,4.79556075716608,20.534720029866,20.8127462370022,3.5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 | |||
|short_description=p1@PPWD1 | |||
}} |
Revision as of 05:40, 22 January 2014
Short description: | p1@PPWD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPWD1_5end |
Coexpression cluster: | C2295_CD4_CD8_cerebellum_Small_pituitary_Mast_cord |
Association with transcript: | 0bp_to_ENST00000503435, ENST00000510930, ENST00000511908, ENST00000515447, ENST00000535264, ENST00000538977, NM_015342, uc003jtv.3, uc011cqv.1, uc011cqw.1_5end |
EntrezGene: | PPWD1 |
HGNC: | 28954 |
UniProt: | D6RHV0D6RA12D6RDA4D6RB19F5H7P7B4DWR9Q96BP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.58e-16 | 53 |
common lymphoid progenitor | 9.58e-16 | 53 |
lymphoid lineage restricted progenitor cell | 1.88e-15 | 52 |
hematopoietic stem cell | 1.78e-13 | 168 |
hematopoietic oligopotent progenitor cell | 1.92e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.92e-12 | 161 |
hematopoietic cell | 3.95e-12 | 177 |
mature alpha-beta T cell | 1.20e-10 | 18 |
alpha-beta T cell | 1.20e-10 | 18 |
immature T cell | 1.20e-10 | 18 |
mature T cell | 1.20e-10 | 18 |
immature alpha-beta T cell | 1.20e-10 | 18 |
T cell | 3.43e-10 | 25 |
pro-T cell | 3.43e-10 | 25 |
hematopoietic lineage restricted progenitor cell | 4.53e-10 | 120 |
leukocyte | 1.94e-09 | 136 |
nongranular leukocyte | 2.26e-09 | 115 |
CD8-positive, alpha-beta T cell | 5.99e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.59e-12 | 114 |
neural tube | 2.52e-08 | 56 |
neural rod | 2.52e-08 | 56 |
future spinal cord | 2.52e-08 | 56 |
neural keel | 2.52e-08 | 56 |
regional part of nervous system | 1.60e-07 | 53 |
regional part of brain | 1.60e-07 | 53 |
regional part of forebrain | 3.08e-07 | 41 |
forebrain | 3.08e-07 | 41 |
anterior neural tube | 3.08e-07 | 41 |
future forebrain | 3.08e-07 | 41 |