FFCP PHASE1:Hg19::chr6:15246501..15246524,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3720 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6196 | |||
|TSSclassifier=strong | |||
|UniProt=Q92833 | |||
|association_with_transcript=-2bp_to_ENST00000341776,NM_004973,uc003nbj.2_5end | |||
|coexpression_cluster_id=C3218 | |||
|description=CAGE_peak_12_at_JARID2_5end | |||
|id=chr6:15246501..15246524,+ | |||
|ontology_enrichment_celltype=CL:0000763!4.87e-33!112;CL:0000049!4.87e-33!112;CL:0000766!1.32e-32!76;CL:0000557!1.42e-32!71;CL:0000037!4.43e-32!172;CL:0000566!4.43e-32!172;CL:0000839!5.51e-31!70;CL:0002032!1.34e-30!165;CL:0000837!1.34e-30!165;CL:0002009!2.12e-29!65;CL:0000988!4.01e-29!182;CL:0002057!5.74e-29!42;CL:0000738!1.45e-28!140;CL:0002194!5.29e-28!63;CL:0000576!5.29e-28!63;CL:0000040!5.29e-28!63;CL:0000559!5.29e-28!63;CL:0002031!1.75e-27!124;CL:0000860!1.74e-25!45;CL:0002087!1.89e-24!119;CL:0000134!2.68e-07!358;CL:0000219!3.93e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.54e-53;33!CL:0002057;1.54e-53;33!CL:0000473;1.14e-41;39!CL:0000234;1.14e-41;39!CL:0000576;2.47e-35;48!CL:0000766;7.76e-29;69!CL:0000763;5.89e-15;100!CL:0000738;2.92e-11;136!CL:0002087;2.08e-10;104!CL:0000775;2.93e-09;3!CL:0002322;3.42e-08;5!CL:0002393;6.06e-08;6!CL:0002397;6.06e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.72e-61,42;CL:0002057,2.72e-61,42;CL:0000473,1.90e-59,48;CL:0000234,1.90e-59,48;CL:0000557,2.76e-58,67;CL:0000766,6.98e-57,72;CL:0002009,1.98e-55,61;CL:0002194,2.34e-51,59;CL:0000576,2.34e-51,59;CL:0000040,2.34e-51,59;CL:0000559,2.34e-51,59;CL:0000839,1.96e-50,66;CL:0000763,2.32e-44,108;CL:0000049,2.32e-44,108;CL:0000738,5.49e-36,136;CL:0002031,4.18e-31,120;CL:0000037,4.55e-31,168;CL:0002032,5.25e-30,161;CL:0000837,5.25e-30,161;CL:0002087,2.15e-29,115;CL:0000988,8.54e-29,177;CL:0000219,4.77e-11,386;CL:0000134,8.00e-11,354;CL:0000034,1.46e-10,441;CL:0002320,2.39e-10,361;CL:0000775,3.65e-09,3;CL:0000048,2.12e-08,427;CL:0000723,4.33e-08,433;CL:0002322,1.52e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;7.84e-44;42!CL:0000049;1.65e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.44e-28!80;UBERON:0001474!3.41e-27!86;UBERON:0002390!7.35e-27!102;UBERON:0003061!7.35e-27!102;UBERON:0002193!8.53e-24!112;UBERON:0004765!4.62e-22!101;UBERON:0001434!4.62e-22!101;UBERON:0002405!8.70e-17!115;UBERON:0002204!2.02e-07!167;UBERON:0002384!6.60e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.43e-50,76;UBERON:0001474,1.33e-45,82;UBERON:0004765,1.48e-40,90;UBERON:0002390,2.03e-40,98;UBERON:0003061,2.03e-40,98;UBERON:0002405,6.93e-39,93;UBERON:0002193,1.35e-35,108;UBERON:0001434,2.23e-35,100;UBERON:0002204,8.12e-18,167;UBERON:0003081,2.01e-15,203;UBERON:0002384,1.05e-09,371;UBERON:0000926,5.04e-09,315;UBERON:0004120,5.04e-09,315;UBERON:0006603,5.04e-09,315 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0,0,0,0,0.572471974262113,0,0.251085279189606,0.305653622991805,0.0821005894499457,0.236132343941038,1.57345710739562,0.383829398097213,0.928896739896456,0,0,0,0,0,0.880801318004542,12.1878989877013,4.01088894940283,5.859293509328,1.56740831967947,0.971680998056939,0.257575567634187,1.59938062657521,1.13362783106643,0.727752183563449,2.32429036905685,2.87817521615278,1.54853185447552,1.7261543539329,1.2808035326455,1.41889337933151,2.41321976515633,1.93645405075148,1.35426486594342,3.01187743268168,1.36453075028923,1.12361742222542,2.44867113896722,2.56743221660875,2.55734850319616,1.64925650093358,0.997318288108159,1.27867425159808,2.32167390902867,2.26954089876456,1.24564449799115,3.01498398308092,3.65038042894141,1.52032191293582,3.02699751316684,1.10483290796269,2.21523671208619,0.422510572623884,0.425208599930087,1.46761051855863,0.561643155732475,1.05123824989054,0.64290234678832,0.855038231223746,0.59675003159727,0.365328307529268,0,0.546138611262131,0.889509253863555,0,0,0,0,0.954053754535364,1.70763890732835,1.76171156811282,0.382273228125229,2.64342657158052,0.560508562981536,0.526768169550154,0,0.393010762749165,0.616804496998528,0,0.651844533267181,0.473447805734733,0,0.334231370655521,0.589211814949674,0.221533894583621,0,0.640456598628376,0.520237390239513,0.493313713811028,0.276350017785848,0,0.296573126324121,0,0,0,0.383220493601921,0,0,0,0.651083453856419,0,0,0.127986611154418,0,0,1.64225599384209,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0,0,0.175669571386252,0,0.364295288292542,0.370784442784429,1.29818957461873,0.870648686496336,0.132957960518865,0.953962497221368,0,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0.600952235626387,0,0,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,1.00973509697646,0,0,0,0.10075209822764,0.339121184620975,0.386521706326594,0,0,1.21973706129595,0.530119073285941,1.04574548582567,1.0366105501537,1.00928340350251,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0.277765335475589,0,0,1.44331342025273,0.115930404975077,0,0,0,0,0,0,0.738651018262192,0.234004265139238,0,0,0,0,0.358234090811393,0,0,0.492663237895943,0.264145302039678,1.24396869324463,2.01767934783746,0.88369703398466,0,0,1.17217447210047,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0.502257091432126,2.10833939483032,0,0,0,0,0,0.179060963239896,0,0.394061520403854,0.431255149719035,0.898401253958239,0,0,0,0.167516265334349,0,5.99205619157746,8.97484377612075,1.24324654030811,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0.173767228936166,0,0,1.6541442089831,1.07857100409308,0.533637789017222,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.355123450626254,0,0.519254429183621,0,0.120859449591622,0.40101294060657,0.736647911487171,0.229628896329213,0,0.524497659837696,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,0.103041011647722,0,0.495056999523528,0,0,0,0.096670718292122,0.154048617114644,0,0,0.107420244868274,0,0,0.178064071293475,0.495854746082934,0.384380134730212,0.765676274967505,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0,0.30982349809975,0,0,0.196498082026242,0,0,0,0,0,0,0.192444225451024,0.670302275535787,1.08890984861323,0.0941438007767792,0,0,0,0.689170200620878,0,0,0,0.238231775457789,0.822724546172388,0,0,0.79312517629427,0,0,0.490080431962063,0,0,0.355709216742071,0.637705090915289,0.59873811429845,0.191505370132367,0.211673582723883,0,0.280797178113459,0.456469358066384,0.156679895773023,2.50634477090067,0,0.321176150207399,0.201799707191048,2.12923118845163,0.343505344755765,0.307240764308458,0,0,0.390776190804081,0,0,0,0.33307196799782,0,0,0.146508179271894,0.121360521749513,0.891547074219827,0,0,0.296964680832639,0,0,0,0.333926115068718,0.494411622680279,0,0,0.276283915531148,0,0.102268682502155,0.123084805461069,0,0,0.179021174675609,0,0,0,0,1.93866549219044,0.0927680981618513,0,0,0.262379999988587,0,0,0.254253650292766,0.236387681767936,0,0.583209226766509,0,0.885741385813839,0.120596438625408,0,0.331737779793674,0.886642856860642,0,0,0,0.153900517007594,0,0,0.359030577639089,0.325942115766024,1.27600463892768,0.0915975934018623,1.06606955203727,0,0.156980256395025,0.332423363800313,0,0.19606253431774,0.335643173951685,0.569261198172555,0.158936578980379,0.210998064528027,0,0,0,0,0,0.611030144933625,0.296521128680622,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0.150323419414493,0.414752765588989,0,0,0,0,0.284609546029793,0.554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| |||
|short_description=p12@JARID2 | |||
}} |
Revision as of 10:12, 22 January 2014
Short description: | p12@JARID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_JARID2_5end |
Coexpression cluster: | C3218_CD14_Neutrophils_Eosinophils_Peripheral_Monocytederived_CD19_parietal |
Association with transcript: | -2bp_to_ENST00000341776, NM_004973, uc003nbj.2_5end |
EntrezGene: | JARID2 |
HGNC: | 6196 |
UniProt: | Q92833 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.72e-61 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.72e-61 | 42 |
defensive cell | 1.90e-59 | 48 |
phagocyte | 1.90e-59 | 48 |
granulocyte monocyte progenitor cell | 2.76e-58 | 67 |
myeloid leukocyte | 6.98e-57 | 72 |
macrophage dendritic cell progenitor | 1.98e-55 | 61 |
monopoietic cell | 2.34e-51 | 59 |
monocyte | 2.34e-51 | 59 |
monoblast | 2.34e-51 | 59 |
promonocyte | 2.34e-51 | 59 |
myeloid lineage restricted progenitor cell | 1.96e-50 | 66 |
myeloid cell | 2.32e-44 | 108 |
common myeloid progenitor | 2.32e-44 | 108 |
leukocyte | 5.49e-36 | 136 |
hematopoietic lineage restricted progenitor cell | 4.18e-31 | 120 |
hematopoietic stem cell | 4.55e-31 | 168 |
hematopoietic oligopotent progenitor cell | 5.25e-30 | 161 |
hematopoietic multipotent progenitor cell | 5.25e-30 | 161 |
nongranular leukocyte | 2.15e-29 | 115 |
hematopoietic cell | 8.54e-29 | 177 |
motile cell | 4.77e-11 | 386 |
mesenchymal cell | 8.00e-11 | 354 |
stem cell | 1.46e-10 | 441 |
connective tissue cell | 2.39e-10 | 361 |
neutrophil | 3.65e-09 | 3 |
multi fate stem cell | 2.12e-08 | 427 |
somatic stem cell | 4.33e-08 | 433 |
embryonic stem cell | 1.52e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.43e-50 | 76 |
bone element | 1.33e-45 | 82 |
skeletal element | 1.48e-40 | 90 |
hematopoietic system | 2.03e-40 | 98 |
blood island | 2.03e-40 | 98 |
immune system | 6.93e-39 | 93 |
hemolymphoid system | 1.35e-35 | 108 |
skeletal system | 2.23e-35 | 100 |
musculoskeletal system | 8.12e-18 | 167 |
lateral plate mesoderm | 2.01e-15 | 203 |
connective tissue | 1.05e-09 | 371 |
mesoderm | 5.04e-09 | 315 |
mesoderm-derived structure | 5.04e-09 | 315 |
presumptive mesoderm | 5.04e-09 | 315 |