FFCP PHASE1:Hg19::chr6:89673299..89673349,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8732 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10073 | |||
|TSSclassifier=strong | |||
|UniProt=O60942,B4DIQ0,B4DSJ8,Q5TCW7 | |||
|association_with_transcript=0bp_to_ENST00000265607,ENST00000369485,ENST00000536746,ENST00000538899,NM_003800,uc003pmr.2,uc003pms.2,uc003pmt.2,uc011dzu.1_5end | |||
|coexpression_cluster_id=C972 | |||
|description=CAGE_peak_1_at_RNGTT_5end | |||
|id=chr6:89673299..89673349,- | |||
|ontology_enrichment_celltype=CL:0000037!2.90e-29!172;CL:0000566!2.90e-29!172;CL:0002032!4.34e-26!165;CL:0000837!4.34e-26!165;CL:0000988!5.31e-26!182;CL:0000738!2.83e-22!140;CL:0000542!1.02e-20!53;CL:0000051!1.02e-20!53;CL:0000838!2.10e-20!52;CL:0002087!1.46e-17!119;CL:0002031!9.03e-17!124;CL:0000791!2.13e-11!18;CL:0000789!2.13e-11!18;CL:0002420!2.13e-11!18;CL:0002419!2.13e-11!18;CL:0000790!2.13e-11!18;CL:0000084!1.76e-10!25;CL:0000827!1.76e-10!25;CL:0000945!1.19e-09!24;CL:0000826!1.19e-09!24;CL:0000763!5.96e-09!112;CL:0000049!5.96e-09!112;CL:0000236!4.01e-08!14;CL:0000625!5.57e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.77e-12;53!CL:0000791;2.39e-11;18!CL:0000789;2.39e-11;18!CL:0002419;2.39e-11;18!CL:0000084;2.50e-10;25!CL:0000945;1.08e-09;24!CL:0000236;2.86e-08;13!CL:0000625;5.95e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.70e-29,168;CL:0000988,8.30e-27,177;CL:0002032,2.67e-26,161;CL:0000837,2.67e-26,161;CL:0000738,1.64e-22,136;CL:0000542,1.02e-20,53;CL:0000051,1.02e-20,53;CL:0000838,2.10e-20,52;CL:0002087,8.71e-18,115;CL:0002031,5.81e-17,120;CL:0000791,2.13e-11,18;CL:0000789,2.13e-11,18;CL:0002420,2.13e-11,18;CL:0002419,2.13e-11,18;CL:0000790,2.13e-11,18;CL:0000084,1.76e-10,25;CL:0000827,1.76e-10,25;CL:0000945,1.19e-09,24;CL:0000826,1.19e-09,24;CL:0000763,5.13e-09,108;CL:0000049,5.13e-09,108;CL:0000236,4.01e-08,14;CL:0000625,5.57e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000051;1.77e-12;53!CL:0000790;2.39e-11;18 | |||
|ontology_enrichment_disease=DOID:2531!4.17e-10!51;DOID:0060083!4.17e-10!51;DOID:1240!9.09e-09!39;DOID:8692!1.83e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.34e-07;39!DOID:8692;4.46e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.17e-10,51;DOID:0060083,4.17e-10,51;DOID:1240,9.09e-09,39;DOID:8692,1.83e-07,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p1@RNGTT | |||
}} |
Revision as of 12:56, 22 January 2014
Short description: | p1@RNGTT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNGTT_5end |
Coexpression cluster: | C972_granulocyte_CD4_CD19_Neutrophils_acute_CD8_Eosinophils |
Association with transcript: | 0bp_to_ENST00000265607, ENST00000369485, ENST00000536746, ENST00000538899, NM_003800, uc003pmr.2, uc003pms.2, uc003pmt.2, uc011dzu.1_5end |
EntrezGene: | RNGTT |
HGNC: | 10073 |
UniProt: | O60942B4DIQ0B4DSJ8Q5TCW7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.70e-29 | 168 |
hematopoietic cell | 8.30e-27 | 177 |
hematopoietic oligopotent progenitor cell | 2.67e-26 | 161 |
hematopoietic multipotent progenitor cell | 2.67e-26 | 161 |
leukocyte | 1.64e-22 | 136 |
lymphocyte | 1.02e-20 | 53 |
common lymphoid progenitor | 1.02e-20 | 53 |
lymphoid lineage restricted progenitor cell | 2.10e-20 | 52 |
nongranular leukocyte | 8.71e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 5.81e-17 | 120 |
mature alpha-beta T cell | 2.13e-11 | 18 |
alpha-beta T cell | 2.13e-11 | 18 |
immature T cell | 2.13e-11 | 18 |
mature T cell | 2.13e-11 | 18 |
immature alpha-beta T cell | 2.13e-11 | 18 |
T cell | 1.76e-10 | 25 |
pro-T cell | 1.76e-10 | 25 |
lymphocyte of B lineage | 1.19e-09 | 24 |
pro-B cell | 1.19e-09 | 24 |
myeloid cell | 5.13e-09 | 108 |
common myeloid progenitor | 5.13e-09 | 108 |
B cell | 4.01e-08 | 14 |
CD8-positive, alpha-beta T cell | 5.57e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.17e-10 | 51 |
immune system cancer | 4.17e-10 | 51 |
leukemia | 9.09e-09 | 39 |
myeloid leukemia | 1.83e-07 | 31 |