Personal tools

CL:0000058: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000058
|alt_id=
|name=chondroblast
|namespace=cell
|def="An immature cartilage-producing cell found in growing cartilage." [GOC:tfm, ISBN:0618947256]
|xref=BTO:0003607;;FMA:66783
|is_a=CL:0000055;;CL:0002320
|synonym="chrondoplast" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An immature cartilage-producing cell found in growing cartilage." [GOC:tfm, ISBN:0618947256]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000134
|develops_from=CL:0007009
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000058
|is_a=CL:0000055 ;;CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=chondroblast
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="chrondoplast" EXACT []
|union_of=
|xref=BTO:0003607;;FMA:66783
}}
}}

Revision as of 10:12, 12 September 2014

Name:chondroblast
Namespace:cell
Definition:"An immature cartilage-producing cell found in growing cartilage." [GOC:tfm, ISBN:0618947256]
Xrefs:
links:

BTO:0003607

FMA:66783
Synonyms: "chrondoplast" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell)
develops_from:CL:0007009(prechondroblast)



Children


is a:FF:0000036 (chondroblast)
develops from:CL:0000138 (chondrocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000058 (chondroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.17e-105FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_1b6577f7d906bd7eee0ca52530a6e180p@chr7:150824026..150824027, -
5.17e-105FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_1b6577f7d906bd7eee0ca52530a6e180p@chr7:150824026..150824027, -
4.67e-75FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_f612a2a9ba2f76c87428a2f478adf91ap@chr8:57359975..57359992, -
4.67e-75FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_f612a2a9ba2f76c87428a2f478adf91ap@chr8:57359975..57359992, -
5.66e-75FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_94d04f9ba99a49e113bd7375cf672782p@chr8:57353982..57353991, -
5.66e-75FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_94d04f9ba99a49e113bd7375cf672782p@chr8:57353982..57353991, -
4.26e-74FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_f67dfb2b26fe540b536d1e647ffabd6fp@chr16:66906996..66906997, -
4.26e-74FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_f67dfb2b26fe540b536d1e647ffabd6fp@chr16:66906996..66906997, -
5.47e-74FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_c295874b2c9b01bd76e4b3a347b4059fp@chr8:57354278..57354286, +
5.47e-74FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_c295874b2c9b01bd76e4b3a347b4059fp@chr8:57354278..57354286, +
2.83e-66FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_a4ecca36941420580a18ec70450e2786p@chr8:37535618..37535621, +
2.83e-66FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_a4ecca36941420580a18ec70450e2786p@chr12:57628728..57628739, -
2.83e-66FFCP PHASE2:Hg19::chr21:40033882..40033887,-#_a4ecca36941420580a18ec70450e2786p21@ERG
2.83e-66FFCP PHASE1:Hg19::chr21:40033882..40033887,-#_a4ecca36941420580a18ec70450e2786p21@ERG
2.83e-66FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_a4ecca36941420580a18ec70450e2786p@chr12:57628728..57628739, -
2.83e-66FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_a4ecca36941420580a18ec70450e2786p@chr8:37535618..37535621, +
5.13e-66FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_efe872d3ca14446714357d7f47f443b4p6@ACAN
5.13e-66FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_efe872d3ca14446714357d7f47f443b4p6@ACAN
1.63e-59FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_df8e54ec6eefb226083dc508a8862758p@chr12:57629315..57629334, -
1.63e-59FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_df8e54ec6eefb226083dc508a8862758p@chr15:89417758..89417770, +
1.63e-59FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_df8e54ec6eefb226083dc508a8862758p@chr15:89417758..89417770, +
1.63e-59FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_df8e54ec6eefb226083dc508a8862758p@chr12:57629315..57629334, -
1.82e-59FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_f6cab851b013816932c0de9eb2efd414p@chr8:57354143..57354152, +
1.82e-59FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_f6cab851b013816932c0de9eb2efd414p@chr8:57354143..57354152, +
4.12e-59FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_e429d423f215a10c2c977bcd032d108cp8@ACAN
4.12e-59FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_e429d423f215a10c2c977bcd032d108cp8@ACAN
7.47e-59FFCP PHASE1:Hg19::chr12:54651599..54651610,-#_8271630f8449a46169117ff6d2ed7f47p40@CBX5
7.47e-59FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_8271630f8449a46169117ff6d2ed7f47p@chr1:186277359..186277362, +
7.47e-59FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_8271630f8449a46169117ff6d2ed7f47p@chr1:186277359..186277362, +
7.47e-59FFCP PHASE2:Hg19::chr12:54651599..54651610,-#_8271630f8449a46169117ff6d2ed7f47p40@CBX5
1.01e-58FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_ba2a988b861887957b0367a8f6d7b8eap@chr1:186273262..186273282, +
1.01e-58FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_ba2a988b861887957b0367a8f6d7b8eap@chr1:186273262..186273282, +
1.36e-58FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_b0bcb242069f42e684bc7a738aa838e4p9@ERG
1.36e-58FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_b0bcb242069f42e684bc7a738aa838e4p9@ERG
1.82e-58FFCP PHASE1:Hg19::chr8:57354262..57354270,+#_b2bd7867a0798f8aba03d80aac7057adp@chr8:57354262..57354270, +
1.82e-58FFCP PHASE2:Hg19::chr8:57354262..57354270,+#_b2bd7867a0798f8aba03d80aac7057adp@chr8:57354262..57354270, +
3.54e-53FFCP PHASE2:Hg19::chr8:57353888..57353898,-#_56e58de587cc2da05362a760945cf725p@chr8:57353888..57353898, -
3.54e-53FFCP PHASE1:Hg19::chr8:57353888..57353898,-#_56e58de587cc2da05362a760945cf725p@chr8:57353888..57353898, -
3.84e-50FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_f04920e556f534e51a7a1d5a0b466b28p@chr1:186277186..186277192, +
3.84e-50FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_f04920e556f534e51a7a1d5a0b466b28p@chr1:186277186..186277192, +
1.08e-49FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_5b23a87aa54dc3a36522bebaa43002b6p@chr15:89381951..89381962, +
1.08e-49FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_5b23a87aa54dc3a36522bebaa43002b6p@chr15:89381951..89381962, +
4.78e-49FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_54c2d0dabc7b2c866a13ced8a89e2afcp@chr12:57629234..57629249, -
4.78e-49FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_54c2d0dabc7b2c866a13ced8a89e2afcp@chr12:57629234..57629249, -
5.83e-49FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_4c22cae1f1a2da7b0272a9c7c525849dp19@CHI3L1
5.83e-49FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_4c22cae1f1a2da7b0272a9c7c525849dp19@CHI3L1
3.67e-47FFCP PHASE2:Hg19::chr6:112375516..112375536,+#_819841eb7341574d66dc8679841ca30cp2@WISP3
3.67e-47FFCP PHASE1:Hg19::chr6:112375516..112375536,+#_819841eb7341574d66dc8679841ca30cp2@WISP3
1.41e-45FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_a653c6276e76290f93e28d9b0bdaf880p20@CHI3L1
1.41e-45FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_a653c6276e76290f93e28d9b0bdaf880p20@CHI3L1
9.76e-45FFCP PHASE2:Hg19::chr1:186275455..186275462,+#_860788dd0f2c9725bba20f7461ad4f95p@chr1:186275455..186275462, +
9.76e-45FFCP PHASE1:Hg19::chr1:186275455..186275462,+#_860788dd0f2c9725bba20f7461ad4f95p@chr1:186275455..186275462, +
9.76e-45FFCP PHASE2:Hg19::chr7:45953092..45953099,+#_860788dd0f2c9725bba20f7461ad4f95p@chr7:45953092..45953099, +
9.76e-45FFCP PHASE1:Hg19::chr7:45953092..45953099,+#_860788dd0f2c9725bba20f7461ad4f95p@chr7:45953092..45953099, +
1.52e-44FFCP PHASE1:Hg19::chr17:40998201..40998206,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr17:40998201..40998206, +
1.52e-44FFCP PHASE2:Hg19::chr1:186266030..186266037,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p6@PRG4
1.52e-44FFCP PHASE1:Hg19::chr1:186266030..186266037,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p6@PRG4
1.52e-44FFCP PHASE2:Hg19::chr16:69963162..69963192,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr16:69963162..69963192, +
1.52e-44FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr9:97563078..97563086, +
1.52e-44FFCP PHASE1:Hg19::chr16:69963162..69963192,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr16:69963162..69963192, +
1.52e-44FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr9:97563078..97563086, +
1.52e-44FFCP PHASE2:Hg19::chr17:40998185..40998200,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr17:40998185..40998200, +
1.52e-44FFCP PHASE1:Hg19::chr17:40998185..40998200,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr17:40998185..40998200, +
1.52e-44FFCP PHASE2:Hg19::chr17:40998201..40998206,+#_2b0ebbbe1d9214aab7b7f1dcf6dfa3c8p@chr17:40998201..40998206, +
7.53e-44FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_7cd1658cc005c2ecd52b8a9d50960d2ap14@CHI3L1
7.53e-44FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_7cd1658cc005c2ecd52b8a9d50960d2ap14@CHI3L1
3.16e-43FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_504ed9abac6e8f690afbf7a0542d97b2p10@ACAN
3.16e-43FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_504ed9abac6e8f690afbf7a0542d97b2p10@ACAN
3.65e-43FFCP PHASE2:Hg19::chrX:7077601..7077607,+#_b46b4f2253116fa9d597aaef0f657752p17@STS
3.65e-43FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_b46b4f2253116fa9d597aaef0f657752p@chr7:45956964..45956971, +
3.65e-43FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_b46b4f2253116fa9d597aaef0f657752p@chr7:45956964..45956971, +
3.65e-43FFCP PHASE1:Hg19::chrX:7077601..7077607,+#_b46b4f2253116fa9d597aaef0f657752p17@STS
6.48e-43FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_a5a270e9e21d194299f32521228658a6p@chr8:57354360..57354367, +
6.48e-43FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_a5a270e9e21d194299f32521228658a6p@chr8:57354360..57354367, +
8.63e-43FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_35b38ec81b9fc5461fa72337aeda7cafp@chr8:57353804..57353821, -
8.63e-43FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_35b38ec81b9fc5461fa72337aeda7cafp@chr8:57353804..57353821, -
1.03e-41FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_d4d0e3d21439ce63666b99faaa0f23d4p@chr1:203152908..203152924, -
1.03e-41FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_d4d0e3d21439ce63666b99faaa0f23d4p@chr1:203152908..203152924, -
7.63e-41FFCP PHASE2:Hg19::chr9:97807545..97807558,+#_951c6205f870d4f47dd744e6aeb706d3p@chr9:97807545..97807558, +
7.63e-41FFCP PHASE1:Hg19::chr9:97807545..97807558,+#_951c6205f870d4f47dd744e6aeb706d3p@chr9:97807545..97807558, +
1.04e-40FFCP PHASE2:Hg19::chr8:57353745..57353754,-#_9a771a932beb157d4bd9e7d793dc4ac9p@chr8:57353745..57353754, -
1.04e-40FFCP PHASE1:Hg19::chr8:57353745..57353754,-#_9a771a932beb157d4bd9e7d793dc4ac9p@chr8:57353745..57353754, -
1.57e-40FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_c6b3c67d71aa946bfb57d9b261e67c41p21@CHI3L1
1.57e-40FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_c6b3c67d71aa946bfb57d9b261e67c41p21@CHI3L1
1.82e-39FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_f510908e70517121f5edd41a2ed2095ap16@CHI3L1
1.82e-39FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_f510908e70517121f5edd41a2ed2095ap16@CHI3L1
7.29e-39FFCP PHASE2:Hg19::chr7:45956988..45956995,+#_2c95e413de39344a59554bb26386f7bep@chr7:45956988..45956995, +
7.29e-39FFCP PHASE1:Hg19::chr7:45956988..45956995,+#_2c95e413de39344a59554bb26386f7bep@chr7:45956988..45956995, +
9.74e-39FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_e6746582babd34e3a1deee9c47e38364p@chr7:45953320..45953329, +
9.74e-39FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_e6746582babd34e3a1deee9c47e38364p@chr7:45953320..45953329, +
1.3e-38FFCP PHASE2:Hg19::chr3:176912032..176912061,-#_2184ff695008db73cb1e02e63875fdd8p1@BC070375
1.3e-38FFCP PHASE1:Hg19::chr3:176912032..176912061,-#_2184ff695008db73cb1e02e63875fdd8p1@BC070375
2.18e-38FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_7617a4d69c6bf874d414d2af06685a69p6@ERG
2.18e-38FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_7617a4d69c6bf874d414d2af06685a69p6@ERG
5.47e-38FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_a3c0b4e842c1f3c2d7af5a2c948e968bp@chr8:57354275..57354292, -
5.47e-38FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_a3c0b4e842c1f3c2d7af5a2c948e968bp@chr8:57354275..57354292, -
6.3e-38FFCP PHASE2:Hg19::chr1:186276499..186276506,+#_4acb6ffb421f9c69f78cd37fcf883427p@chr1:186276499..186276506, +
6.3e-38FFCP PHASE1:Hg19::chr1:186276499..186276506,+#_4acb6ffb421f9c69f78cd37fcf883427p@chr1:186276499..186276506, +
8.66e-38FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_35ea744efdf00149555761203dde5613p13@CHI3L1
8.66e-38FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_35ea744efdf00149555761203dde5613p13@CHI3L1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000058&oldid=3271836"