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{{CL
{{CL
|id=CL:0000355
|alt_id=
|name=muscle stem cell
|namespace=cell
|def="A multifate stem cell found in skeletal muscle than can differentiate into many different cell types. Distinct cell type from satellite cell." [PMID:18282570]
|xref=FMA:86767
|is_a=CL:0000048
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A multifate stem cell found in skeletal muscle than can differentiate into many different cell types. Distinct cell type from satellite cell." [PMID:18282570]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000355
|is_a=CL:0000048 ;;CL:0000188
|is_obsolete=
|located_in=
|located_in=
|name=muscle stem cell
|namespace=cell
|obo_creation_date=
|part_of=UBERON:0001134
|part_of=UBERON:0001134
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:86767
}}
}}

Revision as of 10:17, 12 September 2014

Name:muscle stem cell
Namespace:cell
Definition:"A multifate stem cell found in skeletal muscle than can differentiate into many different cell types. Distinct cell type from satellite cell." [PMID:18282570]
Xrefs:
links:
FMA:86767


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000048(multi fate stem cell),CL:0000188(cell of skeletal muscle)
part_of:UBERON:0001134(skeletal muscle tissue)



Children


derives from:FF:0000267 (mouse muscle derived stem cell sample)
develops from:CL:0000056 (myoblast),CL:0000515 (skeletal muscle myoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12159-128G8 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL))
  • 12161-128H1 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL))
  • 12163-128H3 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL))

Mouse (Mus musculus)

  • 12159-128G8 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL))
  • 12161-128H1 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL))
  • 12163-128H3 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL))


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000355 (muscle stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_b714024b24239acc78b8b11a5384a545p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_b714024b24239acc78b8b11a5384a545p@chrX:160838683..160838694, +
9.51e-51FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_7e420de552d535a4d983d052523d1970p@chr6:53359400..53359406, +
9.51e-51FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_7e420de552d535a4d983d052523d1970p@chr6:53359400..53359406, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_f13a3b71a8720b8d068167ce39ef85bep@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_f13a3b71a8720b8d068167ce39ef85bep@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_f13a3b71a8720b8d068167ce39ef85bep@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_f13a3b71a8720b8d068167ce39ef85bep@chrX:65748600..65748616, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_73fd4c505d9a6c7ef6cc024b54af8f32p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_73fd4c505d9a6c7ef6cc024b54af8f32p@chrX:160838787..160838800, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_6da17fb1c1e0c1396d38b83f8de3495fp@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_6da17fb1c1e0c1396d38b83f8de3495fp@chr11:81849982..81850000, +
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_854d4f94c056563740c3022c74055245p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_854d4f94c056563740c3022c74055245p@chr17:14813242..14813246, -
4.96e-40FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_56b6189592669178634c16f1b8ec0f22p8@ARHGAP22
4.96e-40FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_56b6189592669178634c16f1b8ec0f22p8@ARHGAP22
7.49e-40FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_1d013a5b5b62c44153772bcbe36bea3ep2@LRRC17
7.49e-40FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_1d013a5b5b62c44153772bcbe36bea3ep2@LRRC17
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_b8dfff384ed5eab950fc3e88589d6149p4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_b8dfff384ed5eab950fc3e88589d6149p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_657493cc071d0ad0ff0e906fcd1b14e6p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_657493cc071d0ad0ff0e906fcd1b14e6p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_657493cc071d0ad0ff0e906fcd1b14e6p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_657493cc071d0ad0ff0e906fcd1b14e6p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_657493cc071d0ad0ff0e906fcd1b14e6p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_657493cc071d0ad0ff0e906fcd1b14e6p@chrX:160840025..160840037, +
7.88e-39FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_24b3ee3119f945447ce102ccb8cd1e64p4@ARHGAP22
7.88e-39FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_24b3ee3119f945447ce102ccb8cd1e64p4@ARHGAP22
8.82e-38FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_f1ab06380451a3014518ea9315ac49dep@chr11:102661517..102661541, -
8.82e-38FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_f1ab06380451a3014518ea9315ac49dep@chr11:102661517..102661541, -
2.99e-37FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_481affff19ed66cbe0bf0d443d535f7ap@chr4:74703497..74703511, +
2.99e-37FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_481affff19ed66cbe0bf0d443d535f7ap@chr4:74703497..74703511, +
9.17e-37FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_abe007c0725f679f85d9c103100c461bp@chr4:7846444..7846449, -
9.17e-37FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_abe007c0725f679f85d9c103100c461bp@chr4:7846444..7846449, -
6.45e-36FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_7854b8bda61ff8088367e05bc53b47fep2@CXCL6
6.45e-36FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_7854b8bda61ff8088367e05bc53b47fep2@CXCL6
1.62e-35FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_39c4055179436fb462ac6bc492ad24a1p1@LRRC17
1.62e-35FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_39c4055179436fb462ac6bc492ad24a1p1@LRRC17
3.28e-35FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_f90b49c7f9406743bd29e3f4833edac7p@chr4:169059590..169059615, +
3.28e-35FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_f90b49c7f9406743bd29e3f4833edac7p@chr4:169059590..169059615, +
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_7c17059a67904a1ebb85d942d557c23ap11@Fam198b
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_7c17059a67904a1ebb85d942d557c23ap11@Fam198b
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_b6f0a6763bca2ac8b880a6f45d016807p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_b6f0a6763bca2ac8b880a6f45d016807p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_9acc8feda4bc2bdc73256a42e53d72d2p7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_9acc8feda4bc2bdc73256a42e53d72d2p7@Gpr39
5.9e-35FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_7ee12be787657da6590cb1eb455d9e9ap3@LRRC17
5.9e-35FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_7ee12be787657da6590cb1eb455d9e9ap3@LRRC17
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_9835d8556eed6d718f0bd7e0796aa15ap11@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_9835d8556eed6d718f0bd7e0796aa15ap11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_570649bbdd98e24838d142d145e8be5ep@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_570649bbdd98e24838d142d145e8be5ep@chrX:160839768..160839780, +
9.33e-35FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_1e398e9163c16f82d35123862d4cadc1p2@PAPPA
9.33e-35FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_1e398e9163c16f82d35123862d4cadc1p2@PAPPA
1.17e-34FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_1777063747dfcbcc4be75f1c84d145f5p1@CU675118
1.17e-34FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_1777063747dfcbcc4be75f1c84d145f5p1@CU675118
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_7f35c35274d83488e3324a53fafba383p8@Gpr39
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_7f35c35274d83488e3324a53fafba383p8@Gpr39
1.59e-34FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_45e64389a690248cd46d81ca0ba00789p@chr2:134548872..134548879, -
1.59e-34FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_45e64389a690248cd46d81ca0ba00789p@chr2:134548872..134548879, -
8.98e-34FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_a88e6a7663d01766f6a6c6e0c401bc83p3@CXCL6
8.98e-34FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_a88e6a7663d01766f6a6c6e0c401bc83p3@CXCL6
1.58e-33FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_bffa398e5a96b9765cfef062578ecc3cp2@RCN3
1.58e-33FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_bffa398e5a96b9765cfef062578ecc3cp2@RCN3
1.72e-33FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_980318dff56360df76ca6cb1cdb9b3b2p3@IFI27L2
1.72e-33FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_980318dff56360df76ca6cb1cdb9b3b2p3@IFI27L2
4.01e-33FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_a5daa774678ab339a6ee9e1324da59ebp2@SASH1
4.01e-33FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_a5daa774678ab339a6ee9e1324da59ebp2@SASH1
4.86e-33FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_1aa530340a3434002208953ac76c17fdp@chr4:74703963..74703975, +
4.86e-33FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_1aa530340a3434002208953ac76c17fdp@chr4:74703963..74703975, +
5.37e-33FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_275cd408b43b323e3bd0374acec74e84p@chr9:35685631..35685657, +
5.37e-33FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_275cd408b43b323e3bd0374acec74e84p@chr9:35685631..35685657, +
1.21e-32FFCP PHASE2:Hg19::chr1:219265603..219265617,-#_a1f64f645f258fcb63246788a80debb3p@chr1:219265603..219265617, -
1.21e-32FFCP PHASE1:Hg19::chr1:219265603..219265617,-#_a1f64f645f258fcb63246788a80debb3p@chr1:219265603..219265617, -
1.84e-32FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_3b184e32046bb48ae7e79665d875d3b0p1@BDKRB1
1.84e-32FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_3b184e32046bb48ae7e79665d875d3b0p1@BDKRB1
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_1d4eb8fdacc31fb324a3e1275b6011cfp@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_1d4eb8fdacc31fb324a3e1275b6011cfp@chr7:96658543..96658553, -
4.19e-32FFCP PHASE2:Hg19::chr7:93516064..93516108,-#_10f8bd4c9477d42176353799ab065388p@chr7:93516064..93516108, -
4.19e-32FFCP PHASE1:Hg19::chr7:93516064..93516108,-#_10f8bd4c9477d42176353799ab065388p@chr7:93516064..93516108, -
4.79e-32FFCP PHASE1:Hg19::chr7:93518473..93518503,+#_208ecc12055fd01070ccee72ae1900aap@chr7:93518473..93518503, +
4.79e-32FFCP PHASE2:Hg19::chr7:93518473..93518503,+#_208ecc12055fd01070ccee72ae1900aap@chr7:93518473..93518503, +
9.47e-32FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_f1f430ff8b8d84426c2a1f7d6b329e2cp@chr3:106484411..106484418, +
9.47e-32FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_f1f430ff8b8d84426c2a1f7d6b329e2cp@chr3:106484411..106484418, +
9.67e-32FFCP PHASE1:Hg19::chr7:93518374..93518429,-#_ec3ca844b65441a143c946ab8ddb39b3p@chr7:93518374..93518429, -
9.67e-32FFCP PHASE2:Hg19::chr7:93518374..93518429,-#_ec3ca844b65441a143c946ab8ddb39b3p@chr7:93518374..93518429, -
9.71e-32FFCP PHASE1:Hg19::chr7:93519497..93519525,-#_4e704fa6c05f2866d7c746a3981333b9p2@TFPI2
9.71e-32FFCP PHASE2:Hg19::chr7:93519497..93519525,-#_4e704fa6c05f2866d7c746a3981333b9p2@TFPI2
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_4b935afcce1cebf54a69e6d8f5ac4405p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_4b935afcce1cebf54a69e6d8f5ac4405p2@Il6
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_4b935afcce1cebf54a69e6d8f5ac4405p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_4b935afcce1cebf54a69e6d8f5ac4405p2@Il6
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_1c0b0e1b3fda7b88e63157c4c4df43afp@chr10:67598037..67598049, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_1c0b0e1b3fda7b88e63157c4c4df43afp@chr10:67598037..67598049, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_da2bae482eb2e4bd8e9bc04751d986f7p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_da2bae482eb2e4bd8e9bc04751d986f7p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_5e0827f922a4ff663f3755d59d4ed438p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_5e0827f922a4ff663f3755d59d4ed438p@chr18:52678391..52678395, -
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_03cd574c369c0891c7027b6505e6787bp@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_03cd574c369c0891c7027b6505e6787bp@chr6:91222095..91222107, +

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