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{{CL
{{CL
|id=CL:0002518
|alt_id=
|name=kidney epithelial cell
|namespace=cell
|def="An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ]
|xref=KUPO:0001019
|is_a=CL:0000066;;CL:1000497
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-08T10:46:34Z
|def="An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002518
|is_a=CL:0000066 ;;CL:1000497
|is_obsolete=
|located_in=
|located_in=
|name=kidney epithelial cell
|namespace=cell
|obo_creation_date=2011-02-08T10:46:34Z
|part_of=UBERON:0002113
|part_of=UBERON:0002113
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=KUPO:0001019
}}
}}

Revision as of 10:27, 12 September 2014

Name:kidney epithelial cell
Namespace:cell
Definition:"An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ]
Xrefs:
links:
KUPO:0001019
Created by:tmeehan
Creation date:2011-02-08T10:46:34Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:1000497(kidney cell)
part_of:UBERON:0002113(kidney)



Children


is a:CL:0002584 (renal cortical epithelial cell),CL:1000449 (epithelial cell of nephron)
derives from:FF:0000115 (mouse kidney epithelial cell sample),FF:0100383 (renal cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002518 (kidney epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.22e-81FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_fd6303671d79d8e28d27fb833a402169p4@PAX2
1.22e-81FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_fd6303671d79d8e28d27fb833a402169p4@PAX2
3.01e-77FFCP PHASE2:Hg19::chr2:693380..693398,+#_aaab409a0434b23cdc835860755d5cf4p@chr2:693380..693398, +
3.01e-77FFCP PHASE1:Hg19::chr2:693380..693398,+#_aaab409a0434b23cdc835860755d5cf4p@chr2:693380..693398, +
8.45e-77FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_f6eb67eeab32ca406f078c86da235b78p7@HOXA10
8.45e-77FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_f6eb67eeab32ca406f078c86da235b78p7@HOXA10
1.12e-73FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_6d4af3144c41fde6f8b2dab661dc444dp4@MEGF11
1.12e-73FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_6d4af3144c41fde6f8b2dab661dc444dp4@MEGF11
1.5e-71FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_72f6d0196bfa64ec6b03defa5114958cp@chr1:1100457..1100470, +
1.5e-71FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_72f6d0196bfa64ec6b03defa5114958cp@chr1:1100457..1100470, +
7.66e-69FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_aad4bab42b1f24132143c841b4f3c064p1@ENST00000418041, p1@ENST00000443104
7.66e-69FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_aad4bab42b1f24132143c841b4f3c064p1@ENST00000418041, p1@ENST00000443104
1.69e-67FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_6e442b703c5f23abe90b12fcfafb5c79p4@AIF1L
1.69e-67FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_6e442b703c5f23abe90b12fcfafb5c79p4@AIF1L
4.89e-63FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_c9e66840ae9be86867506e03743384b2p@chr18:3456189..3456200, +
4.89e-63FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_c9e66840ae9be86867506e03743384b2p@chr18:3456189..3456200, +
5.16e-63FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_acddd957d8d400ab3db6d5c5dbb860a9p2@B3GALT5
5.16e-63FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_acddd957d8d400ab3db6d5c5dbb860a9p2@B3GALT5
1.46e-62FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_2847f74ba3fd15b75918fb2961e27d66p3@PAX2
1.46e-62FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_2847f74ba3fd15b75918fb2961e27d66p3@PAX2
7.39e-61FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_c47dc884870d57af0bb4454fad8f93b5p3@HNF1B
7.39e-61FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_c47dc884870d57af0bb4454fad8f93b5p3@HNF1B
1.5e-58FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_c96a1ab1273c6671912d19afec2d4e6dp2@AB527789
1.5e-58FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_c96a1ab1273c6671912d19afec2d4e6dp2@AB527789
7.19e-55FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_d2404cc7130c1bd95ab0ef60c73d1cf4p@chr16:86768403..86768437, +
7.19e-55FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_d2404cc7130c1bd95ab0ef60c73d1cf4p@chr16:86768403..86768437, +
1.07e-54FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_1b30eaa9bd4a1ae95073e04db46fba2dp@chr7:7606139..7606151, -
1.07e-54FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_1b30eaa9bd4a1ae95073e04db46fba2dp@chr7:7606139..7606151, -
8.92e-54FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_f59ebc10439bb03c918e3eb650267199p@chr21:46826248..46826282, -
8.92e-54FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_f59ebc10439bb03c918e3eb650267199p@chr21:46826248..46826282, -
5.64e-52FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_8625bf16a60167ae84462921d8131832p6@LRRN4
5.64e-52FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_8625bf16a60167ae84462921d8131832p6@LRRN4
1.2e-51FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_f65dc10814fd407d7e32e396a4cf9f9bp2@PAX2
1.2e-51FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_f65dc10814fd407d7e32e396a4cf9f9bp2@PAX2
3.69e-51FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_11226923ee5a99fbe77b078330a67d6bp@chr9:119741711..119741743, -
3.69e-51FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_11226923ee5a99fbe77b078330a67d6bp@chr9:119741711..119741743, -
4.43e-51FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_ed31e47c98410e9551f5c3075d6ab5a1p@chr5:74244100..74244117, +
4.43e-51FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_ed31e47c98410e9551f5c3075d6ab5a1p@chr5:74244100..74244117, +
1.34e-48FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_b6ff3cbdb93851c23210cd6cdee31b1cp@chr16:86604624..86604648, +
1.34e-48FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_b6ff3cbdb93851c23210cd6cdee31b1cp@chr16:86604624..86604648, +
1.53e-46FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_15a178f0e1f1219edff1295374839adfp2@CLDN6
1.53e-46FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_15a178f0e1f1219edff1295374839adfp2@CLDN6
2.27e-46FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_81e93a824c378269080c598b41bdf6b5p3@LRRN4
2.27e-46FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_81e93a824c378269080c598b41bdf6b5p3@LRRN4
8.5e-46FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_5837203a329c5753b8f41cb6993fd5fdp@chr17:36065029..36065045, -
8.5e-46FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_5837203a329c5753b8f41cb6993fd5fdp@chr17:36065029..36065045, -
1.97e-44FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_e4a290fd331ba9cf3b68e344c45d3e9ep3@AIF1L
1.97e-44FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_e4a290fd331ba9cf3b68e344c45d3e9ep3@AIF1L
1.2e-43FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_83c5ddb283600d797b28f55a1cc3fb22p@chr7:140227349..140227360, -
1.2e-43FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_83c5ddb283600d797b28f55a1cc3fb22p@chr7:140227349..140227360, -
1.96e-43FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_03dc507f633fc3cf9f0f659c8daa446dp16@HOXA10
1.96e-43FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_03dc507f633fc3cf9f0f659c8daa446dp16@HOXA10
2.02e-43FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_2978186d33d847cd43239f8ea25b7572p2@LRRN4
2.02e-43FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_2978186d33d847cd43239f8ea25b7572p2@LRRN4
3.63e-43FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_3c60c31af2a90ab0a3c3e87ce7ebc846p1@ENST00000444849
3.63e-43FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_3c60c31af2a90ab0a3c3e87ce7ebc846p1@ENST00000444849
1.11e-42FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_410c9adc934e9990cfaec5da4da5a9ddp3@FXYD2
1.11e-42FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_410c9adc934e9990cfaec5da4da5a9ddp3@FXYD2
7.78e-42FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_f16a38cd301dbc2fbdaf956001bf3e33p@chr7:140227303..140227330, -
7.78e-42FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_f16a38cd301dbc2fbdaf956001bf3e33p@chr7:140227303..140227330, -
1.15e-41FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_187c2b3162345d87b83a27e3197bfde7p@chr2:165603346..165603357, -
1.15e-41FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_187c2b3162345d87b83a27e3197bfde7p@chr2:165603346..165603357, -
3.58e-41FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_0fdd57809509881e7d8abc9a46f6dd83p1@AB527789
3.58e-41FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_0fdd57809509881e7d8abc9a46f6dd83p1@AB527789
3.25e-40FFCP PHASE1:Hg19::chr20:6819236..6819281,+#_b9f8a8a5c15d895d511ed139f35168b2p@chr20:6819236..6819281, +
3.25e-40FFCP PHASE2:Hg19::chr20:6819236..6819281,+#_b9f8a8a5c15d895d511ed139f35168b2p@chr20:6819236..6819281, +
2.67e-38FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_e7d020782b59e8e85802a5f4cfb0e07bp2@C14orf105
2.67e-38FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_e7d020782b59e8e85802a5f4cfb0e07bp2@C14orf105
6.71e-38FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_c9d6679da85948a9a103b583aa61e2a1p7@AIF1L
6.71e-38FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_c9d6679da85948a9a103b583aa61e2a1p7@AIF1L
6.87e-38FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_e6ef47ce923f09f4c6707626fca7b6f8p2@PDZK1IP1
6.87e-38FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_e6ef47ce923f09f4c6707626fca7b6f8p2@PDZK1IP1
1.38e-37FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_4e10edbe374a47e69b6584624e637446p@chr15:85403302..85403304, +
1.38e-37FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_4e10edbe374a47e69b6584624e637446p@chr15:85403302..85403304, +
2.5e-37FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_f0e8c2435655ba7d323c74af1da77edbp@chr7:98453821..98453843, -
2.5e-37FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_f0e8c2435655ba7d323c74af1da77edbp@chr7:98453821..98453843, -
2.78e-37FFCP PHASE1:Hg19::chr8:21911054..21911086,+#_defff0943301fc453f322180c5c24b3ap9@EPB49
2.78e-37FFCP PHASE2:Hg19::chr8:21911054..21911086,+#_defff0943301fc453f322180c5c24b3ap9@EPB49
2.84e-37FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3c89692eabf79bbb9970908bf62f66d3p7@LRRN4
2.84e-37FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3c89692eabf79bbb9970908bf62f66d3p7@LRRN4
1.18e-36FFCP PHASE1:Hg19::chr7:47579188..47579231,-#_d3ff4ae9cf64eebd89c8aad9f162e342p13@TNS3
1.18e-36FFCP PHASE2:Hg19::chr7:47579188..47579231,-#_d3ff4ae9cf64eebd89c8aad9f162e342p13@TNS3
1.37e-36FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_faaffb4472bca2a7584ef9dab81f371fp8@PAX2
1.37e-36FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_faaffb4472bca2a7584ef9dab81f371fp8@PAX2
1.53e-36FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_bb9fe090de402eb7871ae0eaa615468cp3@SULT1C4
1.53e-36FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_bb9fe090de402eb7871ae0eaa615468cp3@SULT1C4
4.44e-36FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_e914027b3048c525ea2bbbb3d6b03414p16@TJP2
4.44e-36FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_e914027b3048c525ea2bbbb3d6b03414p16@TJP2
8.2e-36FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_d8d5d5288531a9f102a86774bcb29c44p1@ENST00000413103
8.2e-36FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_d8d5d5288531a9f102a86774bcb29c44p1@ENST00000413103
1.09e-35FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_e2cf222a0b95d50c0f531303b517e283p2@PLA2G2F
1.09e-35FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_e2cf222a0b95d50c0f531303b517e283p2@PLA2G2F
1.53e-35FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_aa183a0ee96c12e8c20d5df1f3239363p5@LRRN4
1.53e-35FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_aa183a0ee96c12e8c20d5df1f3239363p5@LRRN4
1.98e-35FFCP PHASE1:Hg19::chr11:117695449..117695466,-#_c0cfcaed34505dca3a145746267de19cp1@FXYD2
1.98e-35FFCP PHASE2:Hg19::chr11:117695449..117695466,-#_c0cfcaed34505dca3a145746267de19cp1@FXYD2
3.12e-35FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_d4cb262410742000f32f0bc324cd3d21p5@GALNT14
3.12e-35FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_d4cb262410742000f32f0bc324cd3d21p5@GALNT14
3.29e-35FFCP PHASE2:Hg19::chr2:31361503..31361541,-#_4df94c09d4ad1317671c858d4c7e5b21p4@GALNT14
3.29e-35FFCP PHASE1:Hg19::chr2:31361503..31361541,-#_4df94c09d4ad1317671c858d4c7e5b21p4@GALNT14

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