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{{CL
{{CL
|id=CL:0002549
|alt_id=
|name=fibroblast of choroid plexus
|namespace=cell
|def="A fibroblast that is part of the choroid plexus." [GOC:tfm]
|xref=
|is_a=CL:0000057
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T05:01:39Z
|def="A fibroblast that is part of the choroid plexus." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002549
|is_a=CL:0000057 ;;CL:0002319
|is_obsolete=
|located_in=
|located_in=
|name=fibroblast of choroid plexus
|namespace=cell
|obo_creation_date=2011-02-28T05:01:39Z
|part_of=UBERON:0001886
|part_of=UBERON:0001886
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:28, 12 September 2014

Name:fibroblast of choroid plexus
Namespace:cell
Definition:"A fibroblast that is part of the choroid plexus." [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-28T05:01:39Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000057(fibroblast),CL:0002319(neural cell)
part_of:UBERON:0001886(choroid plexus)



Children


derives from:FF:0000060 (human fibroblast of choroid plexus sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002549 (fibroblast of choroid plexus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_17efbaee1e6730ebd38f8e4074f71a0bp58@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_17efbaee1e6730ebd38f8e4074f71a0bp58@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_17efbaee1e6730ebd38f8e4074f71a0bp55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_17efbaee1e6730ebd38f8e4074f71a0bp55@NAV1
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_8eb2bba94b48a623360b0e3bc9b13c21p@chr8:24997361..24997368, -
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_8eb2bba94b48a623360b0e3bc9b13c21p@chr8:24997361..24997368, -
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_264969a3a95a35b9d937e93e50b2170bp73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_264969a3a95a35b9d937e93e50b2170bp@chr3:146517344..146517356, +
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_264969a3a95a35b9d937e93e50b2170bp@chr3:146517344..146517356, +
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_264969a3a95a35b9d937e93e50b2170bp73@SEPT9
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_9b56d05c49a28cc5bd9e9ca39f366f32p@chr12:15941738..15941768, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_9b56d05c49a28cc5bd9e9ca39f366f32p@chr12:15941738..15941768, +
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_60504f26dd8f2144cbe8dadc5de5cfacp@chr5:149537789..149537803, -
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_60504f26dd8f2144cbe8dadc5de5cfacp@chr5:149537789..149537803, -
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_dfbbc4137800a9137038aa5a00a71381p7@OBFC1
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_dfbbc4137800a9137038aa5a00a71381p7@FLVCR2
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_dfbbc4137800a9137038aa5a00a71381p7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_dfbbc4137800a9137038aa5a00a71381p7@OBFC1
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_a96b58d1e255be6be53098a8de608bd3p@chr16:65159735..65159744, -
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_a96b58d1e255be6be53098a8de608bd3p@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_5f18db5ccdb18cdd0d16e4e3cc8b786dp20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_5f18db5ccdb18cdd0d16e4e3cc8b786dp20@EBF1
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_88964c7b4b7186242c7ca42b1e025511p@chr11:60680190..60680212, +
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_88964c7b4b7186242c7ca42b1e025511p@chr11:60680190..60680212, +
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_4f4c9f72aaeaa169bea392b9eb5f1e38p7@METTL11A
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_4f4c9f72aaeaa169bea392b9eb5f1e38p7@METTL11A
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_94a003d3cd30fd6674e7120be9851575p@chr1:19778678..19778689, -
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_94a003d3cd30fd6674e7120be9851575p@chr1:19778678..19778689, -
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_77bc6814b90ccc8e8dccd42b2ea386abp8@ENPEP
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_77bc6814b90ccc8e8dccd42b2ea386abp8@ENPEP
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_8c5e88632f61ac04407e86e3c6e3bab4p3@ALX4
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_8c5e88632f61ac04407e86e3c6e3bab4p3@ALX4
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_9ef24b682ff86d46de966f6fd9384645p@chr1:236203048..236203055, -
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_9ef24b682ff86d46de966f6fd9384645p@chr1:236203048..236203055, -
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_a4631b3d7a36849b87f2878e209a7f0cp20@RIMS1
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_a4631b3d7a36849b87f2878e209a7f0cp20@RIMS1
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_8a8323ce671094ec231db8d5787bf597p@chr14:87636652..87636657, -
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_8a8323ce671094ec231db8d5787bf597p@chr14:87636652..87636657, -
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_68cbc75eb7ba90f379cd25a1c9b8aa20p30@PRKCH
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_68cbc75eb7ba90f379cd25a1c9b8aa20p30@PRKCH
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_38926426e8184158f1a4fb5561a26fdbp5@CMKLR1
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_38926426e8184158f1a4fb5561a26fdbp5@CMKLR1
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_25427ab105d9a97203346ed7cea19682p11@SLC25A25
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_25427ab105d9a97203346ed7cea19682p11@SLC25A25
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_bb6cd3274cb81a5e8dbca8696852d815p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_bb6cd3274cb81a5e8dbca8696852d815p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_bb6cd3274cb81a5e8dbca8696852d815p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_bb6cd3274cb81a5e8dbca8696852d815p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_bb6cd3274cb81a5e8dbca8696852d815p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_bb6cd3274cb81a5e8dbca8696852d815p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_bb6cd3274cb81a5e8dbca8696852d815p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_bb6cd3274cb81a5e8dbca8696852d815p@chr15:95869480..95869493, +
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_2eaa7cfc22cef8fb60a39a297218cfb8p3@MOGAT1
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_2eaa7cfc22cef8fb60a39a297218cfb8p3@MOGAT1
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_13dbed3a41fa5c07b2db8f8f2b264411p3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_13dbed3a41fa5c07b2db8f8f2b264411p3@AB464362
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_13dbed3a41fa5c07b2db8f8f2b264411p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_13dbed3a41fa5c07b2db8f8f2b264411p@chr5:134260455..134260471, -
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_909fd6bcfcf6ac170e5474f274bfb30dp@chr16:65159902..65159909, -
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_909fd6bcfcf6ac170e5474f274bfb30dp@chr16:65159902..65159909, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_65b8f63959f0998309c709327ce6e18bp@chr5:149537807..149537827, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_65b8f63959f0998309c709327ce6e18bp@chr5:149537807..149537827, -
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_008607af4a8f211801d9f7a3579352a1p6@ZIC4
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_008607af4a8f211801d9f7a3579352a1p6@ZIC4
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_cfd74cef7dfcb9e986d3964086b32383p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_cfd74cef7dfcb9e986d3964086b32383p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_13995dbc570647ab53d266457c4540d0p@chr5:40910094..40910097, +
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_13995dbc570647ab53d266457c4540d0p@chr5:40910094..40910097, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_890b8e37ac5525d8706dd3108e489c36p@chr11:61634768..61634777, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_890b8e37ac5525d8706dd3108e489c36p@chr11:61634768..61634777, +
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_30b5345358b85ef14dd30f9e2b8c77ffp2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_30b5345358b85ef14dd30f9e2b8c77ffp2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_e52a57810cb08898e884071ebb898e31p@chr6:129504885..129504896, -
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_e52a57810cb08898e884071ebb898e31p@chr6:129504885..129504896, -
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_396cff8488ba43f04553127a0681c184p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_396cff8488ba43f04553127a0681c184p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_396cff8488ba43f04553127a0681c184p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_396cff8488ba43f04553127a0681c184p@chr12:279773..279812, +
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_e9502dcef9587e3266c27ba9d5d38416p@chr3:147112699..147112713, -
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_e9502dcef9587e3266c27ba9d5d38416p@chr3:147112699..147112713, -
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_d2a4012b276ed7d5378059ff230105f8p5@FOXD2
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_d2a4012b276ed7d5378059ff230105f8p5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_ac5d9f76a843e04f70822420aafbca98p@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_ac5d9f76a843e04f70822420aafbca98p@chr9:16138889..16138902, -
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_60aa778a5e66ee0c420b6448b3be8a7ep6@MYO1B
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_60aa778a5e66ee0c420b6448b3be8a7ep6@MYO1B
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_3a89c0085ab6814a7b6effed69729b10p@chr3:147088197..147088208, -
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_3a89c0085ab6814a7b6effed69729b10p@chr3:147088197..147088208, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_54981a26d06eb00da9e962421897f5aep@chr17:1013251..1013277, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_54981a26d06eb00da9e962421897f5aep@chr17:1013251..1013277, -
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_9f087921ce93e22b24a424ef1a5e6243p@chr11:60640905..60640919, +
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_9f087921ce93e22b24a424ef1a5e6243p@chr11:60640905..60640919, +
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_248e55bbcdb9e1f9c3c7e05d075eda31p49@SEPT9
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_248e55bbcdb9e1f9c3c7e05d075eda31p49@SEPT9
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_facd3a9bb733486247f1a35c9dd58198p30@ST5
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_facd3a9bb733486247f1a35c9dd58198p30@ST5
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_74cdc73adb9fe6503409526a6150cbacp2@AB527577, p2@CU693346
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_74cdc73adb9fe6503409526a6150cbacp2@AB527577, p2@CU693346
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_a01dfa4400a636188737e6482f4d2245p6@CCDC86
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_a01dfa4400a636188737e6482f4d2245p6@CCDC86

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