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{{DOID
{{DOID
|id=DOID:1115
|alt_id=DOID:3936
|name=sarcoma
|namespace=disease_ontology
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic mesoderm." [url:http://en.wikipedia.org/wiki/Sarcoma]
|xref=ICD9CM:171;;ICD9CM:171.9;;SNOMEDCT_2010_1_31:187985009;;SNOMEDCT_2010_1_31:93765001;;UMLS_CUI:C0153519
|is_a=DOID:0050687
|synonym="connective and soft tissue neoplasm" EXACT [];;"tumor of soft tissue and skeleton" EXACT [NCI2004_11_17:C3810]
|comment=
|comment=
|alt_id=DOID:3936
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic mesoderm." [url:http://en.wikipedia.org/wiki/Sarcoma]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:1115
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=sarcoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="connective and soft tissue neoplasm" EXACT [];;"tumor of soft tissue and skeleton" EXACT [NCI2004_11_17:C3810]
|union_of=
|xref=ICD9CM:171;;ICD9CM:171.9;;SNOMEDCT_2010_1_31:187985009;;SNOMEDCT_2010_1_31:93765001;;UMLS_CUI:C0153519
}}
}}

Revision as of 10:32, 12 September 2014

Name:sarcoma
Namespace:disease_ontology
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic mesoderm." [url:http://en.wikipedia.org/wiki/Sarcoma]
Xrefs:
links:

ICD9CM:171
ICD9CM:171.9
SNOMEDCT_2010_1_31:187985009
SNOMEDCT_2010_1_31:93765001

UMLS_CUI:C0153519
Synonyms: "connective and soft tissue neoplasm" EXACT []
"tumor of soft tissue and skeleton" EXACT [NCI2004_11_17:C3810]
Alt_id: DOID:3936

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:DOID:4235 (spindle cell sarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1115 (sarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.23e-25FFCP PHASE2:Hg19::chr7:155276800..155276807,+#_7f0062634174b963046c0a9ddc5c47e7p@chr7:155276800..155276807, +
4.23e-25FFCP PHASE1:Hg19::chr7:155276800..155276807,+#_7f0062634174b963046c0a9ddc5c47e7p@chr7:155276800..155276807, +
4.7e-23FFCP PHASE2:Hg19::chr4:147559302..147559313,+#_9a8973dc710f8b73393bc24bffb00012p@chr4:147559302..147559313, +
4.7e-23FFCP PHASE1:Hg19::chr4:147559302..147559313,+#_9a8973dc710f8b73393bc24bffb00012p@chr4:147559302..147559313, +
5.71e-21FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_323589c7ee45bbf87e069d47572bc4fap@chr1:172145683..172145699, +
5.71e-21FFCP PHASE2:Hg19::chr12:69678255..69678259,+#_323589c7ee45bbf87e069d47572bc4fap1@ENST00000548895
5.71e-21FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_323589c7ee45bbf87e069d47572bc4fap@chr15:68124311..68124318, +
5.71e-21FFCP PHASE2:Hg19::chr12:70351867..70351878,+#_323589c7ee45bbf87e069d47572bc4fap@chr12:70351867..70351878, +
5.71e-21FFCP PHASE2:Hg19::chr6:113168012..113168027,-#_323589c7ee45bbf87e069d47572bc4fap@chr6:113168012..113168027, -
5.71e-21FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_323589c7ee45bbf87e069d47572bc4fap@chr10:135140510..135140524, -
5.71e-21FFCP PHASE2:Hg19::chr8:114449612..114449615,-#_323589c7ee45bbf87e069d47572bc4fap10@CSMD3
5.71e-21FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_323589c7ee45bbf87e069d47572bc4fap@chr10:135140510..135140524, -
5.71e-21FFCP PHASE1:Hg19::chr2:156009264..156009270,-#_323589c7ee45bbf87e069d47572bc4fap@chr2:156009264..156009270, -
5.71e-21FFCP PHASE2:Hg19::chr8:114449616..114449629,-#_323589c7ee45bbf87e069d47572bc4fap3@CSMD3
5.71e-21FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_323589c7ee45bbf87e069d47572bc4fap@chr15:68124311..68124318, +
5.71e-21FFCP PHASE1:Hg19::chr8:114449612..114449615,-#_323589c7ee45bbf87e069d47572bc4fap10@CSMD3
5.71e-21FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_323589c7ee45bbf87e069d47572bc4fap@chr1:172145683..172145699, +
5.71e-21FFCP PHASE1:Hg19::chr6:113168012..113168027,-#_323589c7ee45bbf87e069d47572bc4fap@chr6:113168012..113168027, -
5.71e-21FFCP PHASE1:Hg19::chr12:69678255..69678259,+#_323589c7ee45bbf87e069d47572bc4fap1@ENST00000548895
5.71e-21FFCP PHASE1:Hg19::chr10:54780374..54780384,+#_323589c7ee45bbf87e069d47572bc4fap@chr10:54780374..54780384, +
5.71e-21FFCP PHASE2:Hg19::chr2:156009264..156009270,-#_323589c7ee45bbf87e069d47572bc4fap@chr2:156009264..156009270, -
5.71e-21FFCP PHASE2:Hg19::chr10:54780374..54780384,+#_323589c7ee45bbf87e069d47572bc4fap@chr10:54780374..54780384, +
5.71e-21FFCP PHASE1:Hg19::chr12:70351867..70351878,+#_323589c7ee45bbf87e069d47572bc4fap@chr12:70351867..70351878, +
5.71e-21FFCP PHASE1:Hg19::chr8:114449616..114449629,-#_323589c7ee45bbf87e069d47572bc4fap3@CSMD3
6.86e-21FFCP PHASE1:Hg19::chr8:40200877..40200902,-#_297d2011428f7b53c4d44b73ae4263c6p1@ENST00000521030
6.86e-21FFCP PHASE2:Hg19::chr8:40200877..40200902,-#_297d2011428f7b53c4d44b73ae4263c6p1@ENST00000521030
1.34e-18FFCP PHASE1:Hg19::chr11:104125418..104125428,+#_6b84452a5614ff00e46c6c235c11f5d3p@chr11:104125418..104125428, +
1.34e-18FFCP PHASE2:Hg19::chr11:104125418..104125428,+#_6b84452a5614ff00e46c6c235c11f5d3p@chr11:104125418..104125428, +
6.33e-18FFCP PHASE1:Hg19::chr8:40200903..40200914,-#_1a0ab0fb46f1ead121d580af0fafadd7p2@ENST00000522486
6.33e-18FFCP PHASE2:Hg19::chr8:40200903..40200914,-#_1a0ab0fb46f1ead121d580af0fafadd7p2@ENST00000522486
8.11e-18FFCP PHASE2:Hg19::chr8:40200933..40200967,-#_429076b7cefe43f2bf97bf3b3c659837p1@ENST00000522486
8.11e-18FFCP PHASE1:Hg19::chr8:40200933..40200967,-#_429076b7cefe43f2bf97bf3b3c659837p1@ENST00000522486
3.14e-16FFCP PHASE2:Hg19::chr18:41513341..41513354,-#_5bd60cfcab447aea03320a222c2db284p@chr18:41513341..41513354, -
3.14e-16FFCP PHASE1:Hg19::chr18:41513341..41513354,-#_5bd60cfcab447aea03320a222c2db284p@chr18:41513341..41513354, -
6.02e-16FFCP PHASE1:Hg19::chr22:22901442..22901461,-#_c64e7cbf0ff8256c3e13ca473d7b7b5ap5@PRAME
6.02e-16FFCP PHASE2:Hg19::chr22:22901442..22901461,-#_c64e7cbf0ff8256c3e13ca473d7b7b5ap5@PRAME
1.23e-15FFCP PHASE1:Hg19::chr7:84644430..84644441,-#_6fc91ae22e69ca99a1822417d940dc30p@chr7:84644430..84644441, -
1.23e-15FFCP PHASE2:Hg19::chr8:114449595..114449607,-#_6fc91ae22e69ca99a1822417d940dc30p6@CSMD3
1.23e-15FFCP PHASE1:Hg19::chr8:114449595..114449607,-#_6fc91ae22e69ca99a1822417d940dc30p6@CSMD3
1.23e-15FFCP PHASE2:Hg19::chr7:84644430..84644441,-#_6fc91ae22e69ca99a1822417d940dc30p@chr7:84644430..84644441, -
1.29e-15FFCP PHASE1:Hg19::chr11:104125387..104125399,+#_ff7582cc8868b97bacff939b2ea6990bp@chr11:104125387..104125399, +
1.29e-15FFCP PHASE2:Hg19::chr11:104125387..104125399,+#_ff7582cc8868b97bacff939b2ea6990bp@chr11:104125387..104125399, +
1.29e-15FFCP PHASE1:Hg19::chr11:104125404..104125415,+#_ff7582cc8868b97bacff939b2ea6990bp@chr11:104125404..104125415, +
1.29e-15FFCP PHASE2:Hg19::chr11:104125404..104125415,+#_ff7582cc8868b97bacff939b2ea6990bp@chr11:104125404..104125415, +
1.66e-15FFCP PHASE2:Hg19::chr2:131058236..131058275,-#_2ef0932282d6274ce2713142badfd296p@chr2:131058236..131058275, -
1.66e-15FFCP PHASE1:Hg19::chr2:131058236..131058275,-#_2ef0932282d6274ce2713142badfd296p@chr2:131058236..131058275, -
2.41e-14FFCP PHASE2:Hg19::chr4:134455464..134455466,-#_153b576b74d0d4a5813a44c4cd9622aap@chr4:134455464..134455466, -
2.41e-14FFCP PHASE1:Hg19::chr10:29115553..29115564,-#_153b576b74d0d4a5813a44c4cd9622aap@chr10:29115553..29115564, -
2.41e-14FFCP PHASE1:Hg19::chr15:68124362..68124376,+#_153b576b74d0d4a5813a44c4cd9622aap@chr15:68124362..68124376, +
2.41e-14FFCP PHASE2:Hg19::chr10:29115553..29115564,-#_153b576b74d0d4a5813a44c4cd9622aap@chr10:29115553..29115564, -
2.41e-14FFCP PHASE2:Hg19::chr1:190678255..190678261,-#_153b576b74d0d4a5813a44c4cd9622aap@chr1:190678255..190678261, -
2.41e-14FFCP PHASE2:Hg19::chr15:68124344..68124357,+#_153b576b74d0d4a5813a44c4cd9622aap@chr15:68124344..68124357, +
2.41e-14FFCP PHASE1:Hg19::chr1:190678255..190678261,-#_153b576b74d0d4a5813a44c4cd9622aap@chr1:190678255..190678261, -
2.41e-14FFCP PHASE2:Hg19::chr1:172134783..172134793,+#_153b576b74d0d4a5813a44c4cd9622aap@chr1:172134783..172134793, +
2.41e-14FFCP PHASE1:Hg19::chr4:134455464..134455466,-#_153b576b74d0d4a5813a44c4cd9622aap@chr4:134455464..134455466, -
2.41e-14FFCP PHASE2:Hg19::chr15:68124362..68124376,+#_153b576b74d0d4a5813a44c4cd9622aap@chr15:68124362..68124376, +
2.41e-14FFCP PHASE1:Hg19::chr10:29115473..29115484,-#_153b576b74d0d4a5813a44c4cd9622aap@chr10:29115473..29115484, -
2.41e-14FFCP PHASE1:Hg19::chr1:172134783..172134793,+#_153b576b74d0d4a5813a44c4cd9622aap@chr1:172134783..172134793, +
2.41e-14FFCP PHASE1:Hg19::chr15:68124344..68124357,+#_153b576b74d0d4a5813a44c4cd9622aap@chr15:68124344..68124357, +
2.41e-14FFCP PHASE2:Hg19::chr10:29115473..29115484,-#_153b576b74d0d4a5813a44c4cd9622aap@chr10:29115473..29115484, -
2.58e-14FFCP PHASE2:Hg19::chr1:172147726..172147731,+#_08350276db57b627469af61a9773aea2p@chr1:172147726..172147731, +
2.58e-14FFCP PHASE1:Hg19::chr18:22254259..22254267,+#_08350276db57b627469af61a9773aea2p@chr18:22254259..22254267, +
2.58e-14FFCP PHASE1:Hg19::chr1:172147726..172147731,+#_08350276db57b627469af61a9773aea2p@chr1:172147726..172147731, +
2.58e-14FFCP PHASE1:Hg19::chr22:49819110..49819121,-#_08350276db57b627469af61a9773aea2p5@C22orf34
2.58e-14FFCP PHASE2:Hg19::chr18:22254259..22254267,+#_08350276db57b627469af61a9773aea2p@chr18:22254259..22254267, +
2.58e-14FFCP PHASE1:Hg19::chr12:68696657..68696661,-#_08350276db57b627469af61a9773aea2p4@MDM1
2.58e-14FFCP PHASE2:Hg19::chr12:68696657..68696661,-#_08350276db57b627469af61a9773aea2p4@MDM1
2.58e-14FFCP PHASE2:Hg19::chr22:49819110..49819121,-#_08350276db57b627469af61a9773aea2p5@C22orf34
2.76e-14FFCP PHASE1:Hg19::chr15:68114974..68114985,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr15:68114974..68114985, +
2.76e-14FFCP PHASE2:Hg19::chr14:32963254..32963261,+#_dbe4b87ac1be6c3ddece0f36215695bap19@AKAP6
2.76e-14FFCP PHASE2:Hg19::chr18:22253484..22253496,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr18:22253484..22253496, +
2.76e-14FFCP PHASE1:Hg19::chr1:188791330..188791337,-#_dbe4b87ac1be6c3ddece0f36215695bap@chr1:188791330..188791337, -
2.76e-14FFCP PHASE1:Hg19::chr7:15639445..15639451,-#_dbe4b87ac1be6c3ddece0f36215695bap@chr7:15639445..15639451, -
2.76e-14FFCP PHASE2:Hg19::chr18:44814866..44814869,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr18:44814866..44814869, +
2.76e-14FFCP PHASE2:Hg19::chr19:48876418..48876427,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr19:48876418..48876427, +
2.76e-14FFCP PHASE1:Hg19::chr14:32963254..32963261,+#_dbe4b87ac1be6c3ddece0f36215695bap19@AKAP6
2.76e-14FFCP PHASE2:Hg19::chr15:68114974..68114985,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr15:68114974..68114985, +
2.76e-14FFCP PHASE1:Hg19::chr18:22253484..22253496,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr18:22253484..22253496, +
2.76e-14FFCP PHASE1:Hg19::chr19:48876418..48876427,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr19:48876418..48876427, +
2.76e-14FFCP PHASE2:Hg19::chr1:188791330..188791337,-#_dbe4b87ac1be6c3ddece0f36215695bap@chr1:188791330..188791337, -
2.76e-14FFCP PHASE1:Hg19::chr18:44814866..44814869,+#_dbe4b87ac1be6c3ddece0f36215695bap@chr18:44814866..44814869, +
2.76e-14FFCP PHASE2:Hg19::chr7:15639445..15639451,-#_dbe4b87ac1be6c3ddece0f36215695bap@chr7:15639445..15639451, -
7.64e-14FFCP PHASE1:Hg19::chr13:64652914..64652935,+#_1df11749aa60773ba1241177fe6deadfp@chr13:64652914..64652935, +
7.64e-14FFCP PHASE1:Hg19::chr21:19858196..19858204,-#_1df11749aa60773ba1241177fe6deadfp2@TMPRSS15
7.64e-14FFCP PHASE2:Hg19::chr21:19858196..19858204,-#_1df11749aa60773ba1241177fe6deadfp2@TMPRSS15
7.64e-14FFCP PHASE2:Hg19::chr13:64652914..64652935,+#_1df11749aa60773ba1241177fe6deadfp@chr13:64652914..64652935, +
1.66e-13FFCP PHASE1:Hg19::chr1:197886665..197886732,+#_d75a307280e4b064dc58230cfde72816p3@LHX9
1.66e-13FFCP PHASE2:Hg19::chr1:197886665..197886732,+#_d75a307280e4b064dc58230cfde72816p3@LHX9
1.69e-13FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_661b75457e8e92745a20dd6d8e2e7804p10@ITGA8
1.69e-13FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_661b75457e8e92745a20dd6d8e2e7804p10@ITGA8
1.84e-13FFCP PHASE2:Hg19::chr1:10434688..10434703,+#_a5459df4bbee19c92b6bba65fad30393p@chr1:10434688..10434703, +
1.84e-13FFCP PHASE1:Hg19::chr1:10434688..10434703,+#_a5459df4bbee19c92b6bba65fad30393p@chr1:10434688..10434703, +
1.92e-13FFCP PHASE2:Hg19::chr7:84139434..84139439,+#_75b46acb1807d99c51e7956a06272c3cp@chr7:84139434..84139439, +
1.92e-13FFCP PHASE1:Hg19::chr5:135378786..135378804,+#_75b46acb1807d99c51e7956a06272c3cp@chr5:135378786..135378804, +
1.92e-13FFCP PHASE1:Hg19::chr7:84139434..84139439,+#_75b46acb1807d99c51e7956a06272c3cp@chr7:84139434..84139439, +
1.92e-13FFCP PHASE2:Hg19::chr5:135378786..135378804,+#_75b46acb1807d99c51e7956a06272c3cp@chr5:135378786..135378804, +
1.36e-12FFCP PHASE1:Hg19::chr15:68115921..68115938,+#_9ec92dfa046adb1a7322af1ddeddaaf0p2@SKOR1
1.36e-12FFCP PHASE2:Hg19::chr15:68115921..68115938,+#_9ec92dfa046adb1a7322af1ddeddaaf0p2@SKOR1
1.49e-12FFCP PHASE1:Hg19::chrX:151307006..151307013,-#_ec5f991793093567917d789df67a8ef9p2@MAGEA10
1.49e-12FFCP PHASE2:Hg19::chrX:151307006..151307013,-#_ec5f991793093567917d789df67a8ef9p2@MAGEA10

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