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{{DOID
{{DOID
|id=DOID:3371
|alt_id=DOID:3370
|name=chondrosarcoma
|namespace=disease_ontology
|def=
|xref=MSH:D002813;;NCI:C2946;;OMIM:215300;;SNOMEDCT_2010_1_31:134336003;;SNOMEDCT_2010_1_31:14990007;;SNOMEDCT_2010_1_31:189886003;;SNOMEDCT_2010_1_31:443520009;;UMLS_CUI:C0008479;;UMLS_CUI:C1335473
|is_a=DOID:201
|synonym="chondrosarcoma" EXACT [NCI2004_11_17:C2946];;"chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:14990007];;"chondrosarcoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189886003];;"chondrosarcoma of bone" EXACT [SNOMEDCT_2005_07_31:134336003];;"primary chondrosarcoma of bone" EXACT [];;"primary chondrosarcoma of the bone" EXACT [NCI2004_11_17:C7155]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=DOID:3370
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3371
|is_a=DOID:201
|is_obsolete=
|located_in=
|located_in=
|name=chondrosarcoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="chondrosarcoma" EXACT [NCI2004_11_17:C2946];;"chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:14990007];;"chondrosarcoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189886003];;"chondrosarcoma of bone" EXACT [SNOMEDCT_2005_07_31:134336003];;"primary chondrosarcoma of bone" EXACT [];;"primary chondrosarcoma of the bone" EXACT [NCI2004_11_17:C7155]
|union_of=
|xref=MSH:D002813;;NCI:C2946;;OMIM:215300;;SNOMEDCT_2010_1_31:134336003;;SNOMEDCT_2010_1_31:14990007;;SNOMEDCT_2010_1_31:189886003;;SNOMEDCT_2010_1_31:443520009;;UMLS_CUI:C0008479;;UMLS_CUI:C1335473
}}
}}

Revision as of 10:34, 12 September 2014

Name:chondrosarcoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D002813
NCI:C2946
OMIM:215300
SNOMEDCT_2010_1_31:134336003
SNOMEDCT_2010_1_31:14990007
SNOMEDCT_2010_1_31:189886003
SNOMEDCT_2010_1_31:443520009
UMLS_CUI:C0008479

UMLS_CUI:C1335473
Synonyms: "chondrosarcoma" EXACT [NCI2004_11_17:C2946]
"chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:14990007]
"chondrosarcoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189886003]
"chondrosarcoma of bone" EXACT [SNOMEDCT_2005_07_31:134336003]
"primary chondrosarcoma of bone" EXACT []
"primary chondrosarcoma of the bone" EXACT [NCI2004_11_17:C7155]
Comments:OMIM mapping confirmed by DO. [SN].
Alt_id: DOID:3370

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:201(connective tissue cancer)



Children


is a:FF:10720-109I9 (),DOID:4549 (extraosseous chondrosarcoma),DOID:5861 (myxoid chondrosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3371 (chondrosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr18:74535888..74535894,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr18:74535888..74535894, -
5.42e-195FFCP PHASE2:Hg19::chr5:128083931..128083952,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:128083931..128083952, +
5.42e-195FFCP PHASE2:Hg19::chr3:170537826..170537835,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:170537826..170537835, +
5.42e-195FFCP PHASE2:Hg19::chrX:591202..591211,-#_a94794a00b78c9028f3bf3b1af3efa58p@chrX:591202..591211, -
5.42e-195FFCP PHASE1:Hg19::chr10:63700017..63700022,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700017..63700022, +
5.42e-195FFCP PHASE2:Hg19::chr12:80818234..80818245,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:80818234..80818245, +
5.42e-195FFCP PHASE1:Hg19::chr4:145101707..145101712,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:145101707..145101712, +
5.42e-195FFCP PHASE1:Hg19::chr2:27806224..27806236,+#_a94794a00b78c9028f3bf3b1af3efa58p5@ZNF512
5.42e-195FFCP PHASE2:Hg19::chr6:152589452..152589462,-#_a94794a00b78c9028f3bf3b1af3efa58p43@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr6:142993137..142993142,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:142993137..142993142, +
5.42e-195FFCP PHASE2:Hg19::chr3:157231406..157231414,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:157231406..157231414, -
5.42e-195FFCP PHASE2:Hg19::chr1:192444852..192444861,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:192444852..192444861, +
5.42e-195FFCP PHASE2:Hg19::chr12:95941674..95941679,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:95941674..95941679, +
5.42e-195FFCP PHASE2:Hg19::chr12:46660412..46660420,-#_a94794a00b78c9028f3bf3b1af3efa58p38@SLC38A1
5.42e-195FFCP PHASE2:Hg19::chr10:63700076..63700086,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700076..63700086, +
5.42e-195FFCP PHASE1:Hg19::chr5:128083909..128083918,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:128083909..128083918, +
5.42e-195FFCP PHASE1:Hg19::chr10:33244302..33244305,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:33244302..33244305, -
5.42e-195FFCP PHASE2:Hg19::chr1:145473297..145473306,+#_a94794a00b78c9028f3bf3b1af3efa58p7@AB464458
5.42e-195FFCP PHASE1:Hg19::chr7:80080929..80080934,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr7:80080929..80080934, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141949..2141956,+#_a94794a00b78c9028f3bf3b1af3efa58p21@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr4:169935485..169935488,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:169935485..169935488, -
5.42e-195FFCP PHASE1:Hg19::chr1:145473286..145473295,+#_a94794a00b78c9028f3bf3b1af3efa58p5@AB464458
5.42e-195FFCP PHASE1:Hg19::chr3:2141888..2141892,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141888..2141892, -
5.42e-195FFCP PHASE2:Hg19::chr14:88282738..88282741,-#_a94794a00b78c9028f3bf3b1af3efa58p1@ENST00000554519
5.42e-195FFCP PHASE1:Hg19::chr6:152589396..152589401,-#_a94794a00b78c9028f3bf3b1af3efa58p68@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr8:107074457..107074458,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr8:107074457..107074458, +
5.42e-195FFCP PHASE2:Hg19::chr3:196296715..196296737,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:196296715..196296737, -
5.42e-195FFCP PHASE1:Hg19::chr1:192408018..192408032,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:192408018..192408032, -
5.42e-195FFCP PHASE1:Hg19::chr12:95941674..95941679,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:95941674..95941679, +
5.42e-195FFCP PHASE1:Hg19::chr1:198595896..198595910,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:198595896..198595910, +
5.42e-195FFCP PHASE1:Hg19::chr1:112916133..112916138,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:112916133..112916138, -
5.42e-195FFCP PHASE2:Hg19::chr3:30570717..30570723,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:30570717..30570723, -
5.42e-195FFCP PHASE2:Hg19::chr3:127441501..127441504,-#_a94794a00b78c9028f3bf3b1af3efa58p59@MGLL
5.42e-195FFCP PHASE2:Hg19::chr12:71031372..71031377,-#_a94794a00b78c9028f3bf3b1af3efa58p25@PTPRB
5.42e-195FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:139817600..139817609, -
5.42e-195FFCP PHASE2:Hg19::chr13:23027835..23027846,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23027835..23027846, +
5.42e-195FFCP PHASE2:Hg19::chr15:96181408..96181419,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr15:96181408..96181419, -
5.42e-195FFCP PHASE1:Hg19::chr14:88282738..88282741,-#_a94794a00b78c9028f3bf3b1af3efa58p1@ENST00000554519
5.42e-195FFCP PHASE2:Hg19::chr6:150735319..150735330,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:150735319..150735330, +
5.42e-195FFCP PHASE1:Hg19::chr8:107074411..107074421,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr8:107074411..107074421, +
5.42e-195FFCP PHASE1:Hg19::chr15:96181408..96181419,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr15:96181408..96181419, -
5.42e-195FFCP PHASE1:Hg19::chr11:30252646..30252648,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr11:30252646..30252648, +
5.42e-195FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:152592460..152592465, -
5.42e-195FFCP PHASE2:Hg19::chr2:175629357..175629367,-#_a94794a00b78c9028f3bf3b1af3efa58p6@CHRNA1
5.42e-195FFCP PHASE1:Hg19::chr6:150735014..150735021,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:150735014..150735021, -
5.42e-195FFCP PHASE1:Hg19::chr20:36848135..36848142,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr20:36848135..36848142, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141759..2141771,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141759..2141771, -
5.42e-195FFCP PHASE1:Hg19::chr9:13006722..13006729,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr9:13006722..13006729, -
5.42e-195FFCP PHASE1:Hg19::chr4:139817573..139817580,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:139817573..139817580, -
5.42e-195FFCP PHASE1:Hg19::chr13:23027835..23027846,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23027835..23027846, +
5.42e-195FFCP PHASE2:Hg19::chr7:18439510..18439521,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr7:18439510..18439521, +
5.42e-195FFCP PHASE2:Hg19::chr6:152589315..152589320,-#_a94794a00b78c9028f3bf3b1af3efa58p72@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr3:157230506..157230511,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:157230506..157230511, +
5.42e-195FFCP PHASE2:Hg19::chr1:192407879..192407891,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:192407879..192407891, -
5.42e-195FFCP PHASE1:Hg19::chr7:18439468..18439477,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr7:18439468..18439477, +
5.42e-195FFCP PHASE1:Hg19::chrX:135338329..135338337,-#_a94794a00b78c9028f3bf3b1af3efa58p@chrX:135338329..135338337, -
5.42e-195FFCP PHASE2:Hg19::chr3:2140207..2140208,+#_a94794a00b78c9028f3bf3b1af3efa58p34@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr1:145471703..145471706,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:145471703..145471706, +
5.42e-195FFCP PHASE2:Hg19::chr13:23733607..23733611,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23733607..23733611, -
5.42e-195FFCP PHASE1:Hg19::chr7:79999046..79999051,+#_a94794a00b78c9028f3bf3b1af3efa58p41@CD36
5.42e-195FFCP PHASE1:Hg19::chr3:1577628..1577634,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:1577628..1577634, -
5.42e-195FFCP PHASE1:Hg19::chr1:197873492..197873502,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:197873492..197873502, -
5.42e-195FFCP PHASE2:Hg19::chr11:30257128..30257133,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr11:30257128..30257133, -
5.42e-195FFCP PHASE1:Hg19::chr9:18504821..18504825,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr9:18504821..18504825, +
5.42e-195FFCP PHASE1:Hg19::chr3:2140149..2140157,+#_a94794a00b78c9028f3bf3b1af3efa58p25@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:228783266..228783269,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:228783266..228783269, -
5.42e-195FFCP PHASE1:Hg19::chr13:23733607..23733611,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23733607..23733611, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141813..2141822,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141813..2141822, -
5.42e-195FFCP PHASE1:Hg19::chr2:74780643..74780673,-#_a94794a00b78c9028f3bf3b1af3efa58p30@LOXL3
5.42e-195FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:188420455..188420469, +
5.42e-195FFCP PHASE2:Hg19::chr10:33244066..33244083,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:33244066..33244083, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589291..152589303,-#_a94794a00b78c9028f3bf3b1af3efa58p38@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr5:109694595..109694599,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:109694595..109694599, +
5.42e-195FFCP PHASE2:Hg19::chr13:23169005..23169009,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23169005..23169009, +
5.42e-195FFCP PHASE1:Hg19::chr3:157221979..157222025,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:157221979..157222025, -
5.42e-195FFCP PHASE1:Hg19::chr17:46178195..46178202,-#_a94794a00b78c9028f3bf3b1af3efa58p12@CBX1
5.42e-195FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr9:79634044..79634053, -
5.42e-195FFCP PHASE2:Hg19::chr18:74535969..74535980,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr18:74535969..74535980, -
5.42e-195FFCP PHASE1:Hg19::chr2:53436150..53436154,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:53436150..53436154, -
5.42e-195FFCP PHASE1:Hg19::chr21:38309134..38309135,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr21:38309134..38309135, -
5.42e-195FFCP PHASE1:Hg19::chr1:43637641..43637648,-#_a94794a00b78c9028f3bf3b1af3efa58p16@EBNA1BP2
5.42e-195FFCP PHASE1:Hg19::chr1:172009977..172009985,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:172009977..172009985, +
5.42e-195FFCP PHASE2:Hg19::chr18:22251681..22251685,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr18:22251681..22251685, -
5.42e-195FFCP PHASE1:Hg19::chr10:63700043..63700053,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700043..63700053, +
5.42e-195FFCP PHASE2:Hg19::chr12:80818259..80818266,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:80818259..80818266, +
5.42e-195FFCP PHASE1:Hg19::chr13:23169005..23169009,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23169005..23169009, +
5.42e-195FFCP PHASE1:Hg19::chrX:591202..591211,-#_a94794a00b78c9028f3bf3b1af3efa58p@chrX:591202..591211, -
5.42e-195FFCP PHASE1:Hg19::chr11:30105969..30105977,-#_a94794a00b78c9028f3bf3b1af3efa58p1@ENST00000527819
5.42e-195FFCP PHASE2:Hg19::chr3:1577545..1577547,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:1577545..1577547, -
5.42e-195FFCP PHASE1:Hg19::chr18:74535888..74535894,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr18:74535888..74535894, -
5.42e-195FFCP PHASE2:Hg19::chr2:206927652..206927658,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:206927652..206927658, -
5.42e-195FFCP PHASE1:Hg19::chr5:128083931..128083952,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:128083931..128083952, +
5.42e-195FFCP PHASE1:Hg19::chr10:33244345..33244348,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:33244345..33244348, -
5.42e-195FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr9:18993581..18993586, -
5.42e-195FFCP PHASE2:Hg19::chr13:23734279..23734283,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr13:23734279..23734283, +
5.42e-195FFCP PHASE1:Hg19::chr3:170537826..170537835,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:170537826..170537835, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_a94794a00b78c9028f3bf3b1af3efa58p16@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr3:106921055..106921063,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:106921055..106921063, -
5.42e-195FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:154942216..154942223, -
5.42e-195FFCP PHASE1:Hg19::chr1:145473297..145473306,+#_a94794a00b78c9028f3bf3b1af3efa58p7@AB464458

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