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{{DOID
{{DOID
|id=DOID:3904
|alt_id=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
|is_a=DOID:1325
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3904
|is_a=DOID:1325
|is_obsolete=
|located_in=
|located_in=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|union_of=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
}}
}}

Revision as of 10:35, 12 September 2014

Name:bronchogenic carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D002283
NCI:C35875
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:254622008
SNOMEDCT_2010_1_31:269561006
SNOMEDCT_2010_1_31:363493006

UMLS_CUI:C0007121
Synonyms: "BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008]
"bronchial cancer" EXACT [CSP2005:2017-5516]
"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875]
"bronchogenic carcinoma" EXACT [CSP2005:2017-6052]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1325(bronchus cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3904 (bronchogenic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.76e-57FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.8e-38FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
1.8e-38FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
2.18e-38FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
2.18e-38FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
1.14e-32FFCP PHASE2:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.14e-32FFCP PHASE1:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.78e-29FFCP PHASE2:Hg19::chr2:103235035..103235044,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235035..103235044, +
1.78e-29FFCP PHASE1:Hg19::chr12:65516484..65516493,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:65516484..65516493, -
1.78e-29FFCP PHASE2:Hg19::chr10:29212181..29212188,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:29212181..29212188, +
1.78e-29FFCP PHASE1:Hg19::chrX:135761770..135761786,-#_39df5efeecaef77fad20cc2f4b578036p@chrX:135761770..135761786, -
1.78e-29FFCP PHASE1:Hg19::chr7:120378721..120378730,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:120378721..120378730, -
1.78e-29FFCP PHASE2:Hg19::chr9:17454062..17454088,+#_39df5efeecaef77fad20cc2f4b578036p@chr9:17454062..17454088, +
1.78e-29FFCP PHASE2:Hg19::chr6:45398505..45398508,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:45398505..45398508, +
1.78e-29FFCP PHASE2:Hg19::chr4:160189282..160189289,+#_39df5efeecaef77fad20cc2f4b578036p38@RAPGEF2
1.78e-29FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_39df5efeecaef77fad20cc2f4b578036p12@CLEC16A
1.78e-29FFCP PHASE2:Hg19::chr12:54535470..54535475,+#_39df5efeecaef77fad20cc2f4b578036p@chr12:54535470..54535475, +
1.78e-29FFCP PHASE2:Hg19::chr11:73475071..73475076,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:73475071..73475076, -
1.78e-29FFCP PHASE1:Hg19::chr3:186548894..186548902,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:186548894..186548902, +
1.78e-29FFCP PHASE2:Hg19::chr8:97961177..97961185,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97961177..97961185, -
1.78e-29FFCP PHASE2:Hg19::chr6:141715304..141715307,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:141715304..141715307, +
1.78e-29FFCP PHASE2:Hg19::chr16:50553120..50553126,-#_39df5efeecaef77fad20cc2f4b578036p@chr16:50553120..50553126, -
1.78e-29FFCP PHASE1:Hg19::chr19:46763326..46763349,+#_39df5efeecaef77fad20cc2f4b578036p@chr19:46763326..46763349, +
1.78e-29FFCP PHASE1:Hg19::chr8:57526601..57526612,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:57526601..57526612, +
1.78e-29FFCP PHASE2:Hg19::chr17:70940275..70940283,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:70940275..70940283, +
1.78e-29FFCP PHASE1:Hg19::chr7:26590581..26590596,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26590581..26590596, -
1.78e-29FFCP PHASE1:Hg19::chr3:77129779..77129782,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:77129779..77129782, +
1.78e-29FFCP PHASE2:Hg19::chr1:168756079..168756087,+#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000420691
1.78e-29FFCP PHASE1:Hg19::chr8:98014001..98014041,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98014001..98014041, -
1.78e-29FFCP PHASE1:Hg19::chr16:13010590..13010593,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010590..13010593, +
1.78e-29FFCP PHASE2:Hg19::chr10:129710296..129710320,-#_39df5efeecaef77fad20cc2f4b578036p@chr10:129710296..129710320, -
1.78e-29FFCP PHASE1:Hg19::chr7:79765099..79765103,+#_39df5efeecaef77fad20cc2f4b578036p29@GNAI1
1.78e-29FFCP PHASE1:Hg19::chr4:41749788..41749795,-#_39df5efeecaef77fad20cc2f4b578036p10@PHOX2B
1.78e-29FFCP PHASE1:Hg19::chr3:95401649..95401655,-#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000463799
1.78e-29FFCP PHASE2:Hg19::chr6:39526005..39526014,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:39526005..39526014, -
1.78e-29FFCP PHASE1:Hg19::chr1:81686906..81686911,+#_39df5efeecaef77fad20cc2f4b578036p@chr1:81686906..81686911, +
1.78e-29FFCP PHASE1:Hg19::chr5:79097476..79097484,+#_39df5efeecaef77fad20cc2f4b578036p@chr5:79097476..79097484, +
1.78e-29FFCP PHASE1:Hg19::chr3:150914241..150914244,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:150914241..150914244, +
1.78e-29FFCP PHASE1:Hg19::chr11:69640133..69640140,+#_39df5efeecaef77fad20cc2f4b578036p@chr11:69640133..69640140, +
1.78e-29FFCP PHASE2:Hg19::chr2:97626499..97626505,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626499..97626505, -
1.78e-29FFCP PHASE2:Hg19::chr1:225650299..225650317,-#_39df5efeecaef77fad20cc2f4b578036p@chr1:225650299..225650317, -
1.78e-29FFCP PHASE1:Hg19::chr12:84664687..84664694,+#_39df5efeecaef77fad20cc2f4b578036p4@ENST00000547882
1.78e-29FFCP PHASE2:Hg19::chr14:60194331..60194336,-#_39df5efeecaef77fad20cc2f4b578036p36@RTN1
1.78e-29FFCP PHASE1:Hg19::chr7:95776211..95776254,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:95776211..95776254, -
1.78e-29FFCP PHASE2:Hg19::chr3:86703174..86703181,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86703174..86703181, -
1.78e-29FFCP PHASE1:Hg19::chr15:71685918..71685922,-#_39df5efeecaef77fad20cc2f4b578036p@chr15:71685918..71685922, -
1.78e-29FFCP PHASE1:Hg19::chr12:27925654..27925663,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:27925654..27925663, -
1.78e-29FFCP PHASE1:Hg19::chr2:8803669..8803680,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:8803669..8803680, -
1.78e-29FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_39df5efeecaef77fad20cc2f4b578036p@chr17:63511856..63511858, -
1.78e-29FFCP PHASE1:Hg19::chr1:199134722..199134729,+#_39df5efeecaef77fad20cc2f4b578036p@chr1:199134722..199134729, +
1.78e-29FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_39df5efeecaef77fad20cc2f4b578036p13@DNMBP
1.78e-29FFCP PHASE1:Hg19::chr9:17454025..17454033,+#_39df5efeecaef77fad20cc2f4b578036p@chr9:17454025..17454033, +
1.78e-29FFCP PHASE1:Hg19::chr7:21209872..21209910,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:21209872..21209910, +
1.78e-29FFCP PHASE1:Hg19::chr6:44681761..44681769,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:44681761..44681769, -
1.78e-29FFCP PHASE2:Hg19::chr6:17845348..17845358,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:17845348..17845358, -
1.78e-29FFCP PHASE1:Hg19::chr13:26155734..26155742,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:26155734..26155742, +
1.78e-29FFCP PHASE2:Hg19::chr16:7354636..7354645,-#_39df5efeecaef77fad20cc2f4b578036p@chr16:7354636..7354645, -
1.78e-29FFCP PHASE1:Hg19::chr3:86703134..86703137,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86703134..86703137, -
1.78e-29FFCP PHASE1:Hg19::chr10:129704512..129704515,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704512..129704515, +
1.78e-29FFCP PHASE1:Hg19::chr8:98108427..98108430,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98108427..98108430, -
1.78e-29FFCP PHASE1:Hg19::chr5:33650078..33650111,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:33650078..33650111, -
1.78e-29FFCP PHASE2:Hg19::chr8:72275738..72275747,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:72275738..72275747, -
1.78e-29FFCP PHASE2:Hg19::chr8:116215608..116215615,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:116215608..116215615, +
1.78e-29FFCP PHASE1:Hg19::chr17:63528638..63528642,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:63528638..63528642, +
1.78e-29FFCP PHASE2:Hg19::chr2:222160756..222160761,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:222160756..222160761, +
1.78e-29FFCP PHASE2:Hg19::chr18:10085817..10085825,+#_39df5efeecaef77fad20cc2f4b578036p@chr18:10085817..10085825, +
1.78e-29FFCP PHASE2:Hg19::chr14:59113338..59113345,+#_39df5efeecaef77fad20cc2f4b578036p@chr14:59113338..59113345, +
1.78e-29FFCP PHASE1:Hg19::chrX:69542573..69542578,+#_39df5efeecaef77fad20cc2f4b578036p@chrX:69542573..69542578, +
1.78e-29FFCP PHASE2:Hg19::chr8:98066259..98066270,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98066259..98066270, -
1.78e-29FFCP PHASE2:Hg19::chr6:154858693..154858698,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:154858693..154858698, +
1.78e-29FFCP PHASE1:Hg19::chr2:222160741..222160750,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:222160741..222160750, +
1.78e-29FFCP PHASE2:Hg19::chr1:144618112..144618116,+#_39df5efeecaef77fad20cc2f4b578036p4@NBPF8
1.78e-29FFCP PHASE1:Hg19::chr8:121815999..121816003,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:121815999..121816003, -
1.78e-29FFCP PHASE1:Hg19::chr2:97626442..97626445,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626442..97626445, -
1.78e-29FFCP PHASE1:Hg19::chr11:31093041..31093047,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:31093041..31093047, -
1.78e-29FFCP PHASE2:Hg19::chr2:192805223..192805230,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:192805223..192805230, +
1.78e-29FFCP PHASE2:Hg19::chr10:129703392..129703416,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129703392..129703416, +

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