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{{DOID
{{DOID
|id=DOID:4235
|alt_id=
|name=spindle cell sarcoma
|namespace=disease_ontology
|def="A sarcoma that results_in cells that are spindle-shaped. They are usually resistant to radiation therapy." [url:http://medical-dictionary.thefreedictionary.com/spindle+cell+sarcoma]
|xref=MSH:D012509;;NCI:C27005;;SNOMEDCT_2010_1_31:9801004;;UMLS_CUI:C0205945
|is_a=DOID:1115
|synonym="spindle cell sarcoma" EXACT [NCI2004_11_17:C27005];;"spindle cell sarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:9801004]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A sarcoma that results_in cells that are spindle-shaped. They are usually resistant to radiation therapy." [url:http://medical-dictionary.thefreedictionary.com/spindle+cell+sarcoma]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4235
|is_a=DOID:1115
|is_obsolete=
|located_in=
|located_in=
|name=spindle cell sarcoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="spindle cell sarcoma" EXACT [NCI2004_11_17:C27005];;"spindle cell sarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:9801004]
|union_of=
|xref=MSH:D012509;;NCI:C27005;;SNOMEDCT_2010_1_31:9801004;;UMLS_CUI:C0205945
}}
}}

Revision as of 10:35, 12 September 2014

Name:spindle cell sarcoma
Namespace:disease_ontology
Definition:"A sarcoma that results_in cells that are spindle-shaped. They are usually resistant to radiation therapy." [url:http://medical-dictionary.thefreedictionary.com/spindle+cell+sarcoma]
Xrefs:
links:

MSH:D012509
NCI:C27005
SNOMEDCT_2010_1_31:9801004

UMLS_CUI:C0205945
Synonyms: "spindle cell sarcoma" EXACT [NCI2004_11_17:C27005]
"spindle cell sarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:9801004]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1115(sarcoma)



Children


is a:FF:10737-110B8 (spindle cell sarcoma cell line:Hs 132.T)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4235 (spindle cell sarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr5:134262904..134262924,-#_a6b53d7a3872760b832b7b1fd2d191bcp@chr5:134262904..134262924, -
5.42e-195FFCP PHASE2:Hg19::chr5:134262904..134262924,-#_a6b53d7a3872760b832b7b1fd2d191bcp@chr5:134262904..134262924, -
3.3e-40FFCP PHASE2:Hg19::chr7:41725773..41725791,-#_1674fdb7a26d3e051c694191366137b9p@chr7:41725773..41725791, -
3.3e-40FFCP PHASE1:Hg19::chr7:41725773..41725791,-#_1674fdb7a26d3e051c694191366137b9p@chr7:41725773..41725791, -
7.06e-34FFCP PHASE1:Hg19::chr15:71624452..71624460,-#_ef2dd3fbed4750f1fd1aafe68a8685e1p@chr15:71624452..71624460, -
7.06e-34FFCP PHASE2:Hg19::chr15:71624452..71624460,-#_ef2dd3fbed4750f1fd1aafe68a8685e1p@chr15:71624452..71624460, -
3.16e-29FFCP PHASE2:Hg19::chr7:41729165..41729178,-#_412ab222e4cf7b35377dd975b4f3b906p@chr7:41729165..41729178, -
3.16e-29FFCP PHASE1:Hg19::chr7:41729165..41729178,-#_412ab222e4cf7b35377dd975b4f3b906p@chr7:41729165..41729178, -
5.13e-23FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_ecd51690a94da3eef4e237d4f434cca0p8@ACAN
5.13e-23FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_ecd51690a94da3eef4e237d4f434cca0p8@ACAN
7.72e-21FFCP PHASE2:Hg19::chr6:35218435..35218446,+#_273ad0bf73ada32f848f27aeb19ef0c6p4@AK123742
7.72e-21FFCP PHASE1:Hg19::chr6:35218435..35218446,+#_273ad0bf73ada32f848f27aeb19ef0c6p4@AK123742
3.91e-19FFCP PHASE2:Hg19::chr3:8793578..8793596,-#_0b9002a64d67cd866e23c1ff9db9d3a6p@chr3:8793578..8793596, -
3.91e-19FFCP PHASE1:Hg19::chr3:8793578..8793596,-#_0b9002a64d67cd866e23c1ff9db9d3a6p@chr3:8793578..8793596, -
3.75e-18FFCP PHASE2:Hg19::chr13:38145589..38145600,-#_01644166858f393a9df4bd61b24a44d8p12@POSTN
3.75e-18FFCP PHASE1:Hg19::chr13:38145589..38145600,-#_01644166858f393a9df4bd61b24a44d8p12@POSTN
4.44e-18FFCP PHASE1:Hg19::chr11:27723059..27723067,-#_490bd048cc0b9dfddfbe198b8a9a549fp11@BDNF
4.44e-18FFCP PHASE2:Hg19::chr11:27723059..27723067,-#_490bd048cc0b9dfddfbe198b8a9a549fp11@BDNF
6.23e-18FFCP PHASE2:Hg19::chr4:28621802..28621808,+#_92c70ad9ed9f4e525b4efc40430d3044p@chr4:28621802..28621808, +
6.23e-18FFCP PHASE1:Hg19::chr4:28621802..28621808,+#_92c70ad9ed9f4e525b4efc40430d3044p@chr4:28621802..28621808, +
1.03e-17FFCP PHASE2:Hg19::chr7:41729687..41729699,-#_38c86d8ef3f463ca30544c7c6ba5c604p15@INHBA
1.03e-17FFCP PHASE1:Hg19::chr7:41729687..41729699,-#_38c86d8ef3f463ca30544c7c6ba5c604p15@INHBA
5.53e-17FFCP PHASE1:Hg19::chr13:38143952..38143964,-#_5d31de103066d3072534ef4da9054157p13@POSTN
5.53e-17FFCP PHASE2:Hg19::chr13:38143952..38143964,-#_5d31de103066d3072534ef4da9054157p13@POSTN
8.86e-17FFCP PHASE1:Hg19::chr1:85824480..85824498,-#_98a1be6b4d2527cb4cffc5e18bc5bb0dp@chr1:85824480..85824498, -
8.86e-17FFCP PHASE2:Hg19::chr1:85824480..85824498,-#_98a1be6b4d2527cb4cffc5e18bc5bb0dp@chr1:85824480..85824498, -
7.46e-16FFCP PHASE2:Hg19::chr8:70016391..70016401,-#_22f40cfe0df51576864d1a145a1ae17cp2@LOC100505718
7.46e-16FFCP PHASE2:Hg19::chr15:33025921..33025938,+#_22f40cfe0df51576864d1a145a1ae17cp@chr15:33025921..33025938, +
7.46e-16FFCP PHASE1:Hg19::chr8:70016391..70016401,-#_22f40cfe0df51576864d1a145a1ae17cp2@LOC100505718
7.46e-16FFCP PHASE1:Hg19::chr15:33025921..33025938,+#_22f40cfe0df51576864d1a145a1ae17cp@chr15:33025921..33025938, +
2.38e-15FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_48b90af4fbf70fd29efe4093ad230cbbp@chr15:89417758..89417770, +
2.38e-15FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_48b90af4fbf70fd29efe4093ad230cbbp@chr7:45953320..45953329, +
2.38e-15FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_48b90af4fbf70fd29efe4093ad230cbbp@chr15:89417758..89417770, +
2.38e-15FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_48b90af4fbf70fd29efe4093ad230cbbp@chr7:45953320..45953329, +
1.41e-14FFCP PHASE1:Hg19::chr3:87039484..87039500,-#_ab46c6d333dcb49d0a1d655f3e78a7e2p@chr3:87039484..87039500, -
1.41e-14FFCP PHASE2:Hg19::chr3:87039484..87039500,-#_ab46c6d333dcb49d0a1d655f3e78a7e2p@chr3:87039484..87039500, -
1.61e-14FFCP PHASE2:Hg19::chr6:75794498..75794514,-#_b450c832d00b72b1e897c9a0625cd108p13@AL359627
1.61e-14FFCP PHASE1:Hg19::chr6:75794498..75794514,-#_b450c832d00b72b1e897c9a0625cd108p13@AL359627
2.75e-14FFCP PHASE2:Hg19::chr7:73483950..73483967,+#_98adc9388bced81830717e04a6deacd8p25@ELN
2.75e-14FFCP PHASE1:Hg19::chr9:38437671..38437689,+#_98adc9388bced81830717e04a6deacd8p@chr9:38437671..38437689, +
2.75e-14FFCP PHASE1:Hg19::chr7:73483950..73483967,+#_98adc9388bced81830717e04a6deacd8p25@ELN
2.75e-14FFCP PHASE2:Hg19::chr9:38437671..38437689,+#_98adc9388bced81830717e04a6deacd8p@chr9:38437671..38437689, +
3.15e-14FFCP PHASE1:Hg19::chr18:25675769..25675772,-#_981bd004b99a7719fbc1b0b50c1a2132p@chr18:25675769..25675772, -
3.15e-14FFCP PHASE2:Hg19::chr11:69333249..69333259,+#_981bd004b99a7719fbc1b0b50c1a2132p@chr11:69333249..69333259, +
3.15e-14FFCP PHASE2:Hg19::chr18:25675769..25675772,-#_981bd004b99a7719fbc1b0b50c1a2132p@chr18:25675769..25675772, -
3.15e-14FFCP PHASE1:Hg19::chr18:25524715..25524719,-#_981bd004b99a7719fbc1b0b50c1a2132p@chr18:25524715..25524719, -
3.15e-14FFCP PHASE1:Hg19::chr11:69333249..69333259,+#_981bd004b99a7719fbc1b0b50c1a2132p@chr11:69333249..69333259, +
3.15e-14FFCP PHASE2:Hg19::chr18:25524715..25524719,-#_981bd004b99a7719fbc1b0b50c1a2132p@chr18:25524715..25524719, -
1.61e-13FFCP PHASE2:Hg19::chr8:70414939..70414943,+#_88a5bc9d47d1f9399868ae2ccc9f49d0p@chr8:70414939..70414943, +
1.61e-13FFCP PHASE1:Hg19::chr8:70414939..70414943,+#_88a5bc9d47d1f9399868ae2ccc9f49d0p@chr8:70414939..70414943, +
1.82e-13FFCP PHASE1:Hg19::chr7:45952284..45952293,-#_798e3e92b572dfc93ed19735b2e5fc11p33@IGFBP3
1.82e-13FFCP PHASE2:Hg19::chr7:45952284..45952293,-#_798e3e92b572dfc93ed19735b2e5fc11p33@IGFBP3
1.83e-13FFCP PHASE1:Hg19::chr6:35218350..35218364,+#_cb8ea68bdb473dada3a0389000781041p2@AK123742
1.83e-13FFCP PHASE2:Hg19::chr6:35218350..35218364,+#_cb8ea68bdb473dada3a0389000781041p2@AK123742
2.06e-13FFCP PHASE2:Hg19::chr4:28623229..28623232,+#_91a10bd825e0665b03226619c049eda1p@chr4:28623229..28623232, +
2.06e-13FFCP PHASE1:Hg19::chr6:152792795..152792816,-#_91a10bd825e0665b03226619c049eda1p@chr6:152792795..152792816, -
2.06e-13FFCP PHASE1:Hg19::chr4:28623229..28623232,+#_91a10bd825e0665b03226619c049eda1p@chr4:28623229..28623232, +
2.06e-13FFCP PHASE2:Hg19::chr6:152792795..152792816,-#_91a10bd825e0665b03226619c049eda1p@chr6:152792795..152792816, -
2.62e-13FFCP PHASE1:Hg19::chr1:198290080..198290094,+#_eea255e0767a101adfb38bff69e022bcp23@NEK7
2.62e-13FFCP PHASE2:Hg19::chr1:198290080..198290094,+#_eea255e0767a101adfb38bff69e022bcp23@NEK7
3.76e-13FFCP PHASE1:Hg19::chr7:45952526..45952533,-#_470de504a8abbc940d7d9ef456b9779dp32@IGFBP3
3.76e-13FFCP PHASE2:Hg19::chr7:45952526..45952533,-#_470de504a8abbc940d7d9ef456b9779dp32@IGFBP3
6.06e-13FFCP PHASE2:Hg19::chr5:14144939..14144951,+#_016e9eb5bfef84bbcb8c6b1630b28889p@chr5:14144939..14144951, +
6.06e-13FFCP PHASE1:Hg19::chr7:45957026..45957035,-#_016e9eb5bfef84bbcb8c6b1630b28889p28@IGFBP3
6.06e-13FFCP PHASE2:Hg19::chr6:35216360..35216374,+#_016e9eb5bfef84bbcb8c6b1630b28889p10@SCUBE3
6.06e-13FFCP PHASE1:Hg19::chr5:14144939..14144951,+#_016e9eb5bfef84bbcb8c6b1630b28889p@chr5:14144939..14144951, +
6.06e-13FFCP PHASE2:Hg19::chr7:45957026..45957035,-#_016e9eb5bfef84bbcb8c6b1630b28889p28@IGFBP3
6.06e-13FFCP PHASE1:Hg19::chr6:35216360..35216374,+#_016e9eb5bfef84bbcb8c6b1630b28889p10@SCUBE3
1.75e-12FFCP PHASE2:Hg19::chr11:126870979..126870996,-#_9753160ba2b4462619c427cd0cab6a92p10@KIRREL3
1.75e-12FFCP PHASE1:Hg19::chr11:126870979..126870996,-#_9753160ba2b4462619c427cd0cab6a92p10@KIRREL3
2.75e-12FFCP PHASE1:Hg19::chr1:26907862..26907865,-#_08de3dd1324a04f8350ae5d9253bcbafp@chr1:26907862..26907865, -
2.75e-12FFCP PHASE1:Hg19::chr15:33023166..33023177,-#_08de3dd1324a04f8350ae5d9253bcbafp12@CU686887
2.75e-12FFCP PHASE2:Hg19::chr1:26907862..26907865,-#_08de3dd1324a04f8350ae5d9253bcbafp@chr1:26907862..26907865, -
2.75e-12FFCP PHASE2:Hg19::chr15:33023166..33023177,-#_08de3dd1324a04f8350ae5d9253bcbafp12@CU686887
3.85e-12FFCP PHASE1:Hg19::chr7:45952542..45952547,-#_a9fe88c33a5277900c58fc72b21c0836p31@IGFBP3
3.85e-12FFCP PHASE2:Hg19::chr7:45952542..45952547,-#_a9fe88c33a5277900c58fc72b21c0836p31@IGFBP3
4.31e-12FFCP PHASE1:Hg19::chr16:69791973..69791975,-#_2e08894b62e14219c96e22d814334afap@chr16:69791973..69791975, -
4.31e-12FFCP PHASE2:Hg19::chr16:69791973..69791975,-#_2e08894b62e14219c96e22d814334afap@chr16:69791973..69791975, -
4.81e-12FFCP PHASE1:Hg19::chr8:70418141..70418144,+#_872078e4768783c5b1df7f9ca1300082p@chr8:70418141..70418144, +
4.81e-12FFCP PHASE2:Hg19::chr8:70418141..70418144,+#_872078e4768783c5b1df7f9ca1300082p@chr8:70418141..70418144, +
5.05e-12FFCP PHASE1:Hg19::chr4:187544379..187544383,-#_e10b1ecea8825192f3ed7db3568a6b11p1@BC016998
5.05e-12FFCP PHASE2:Hg19::chr4:187544379..187544383,-#_e10b1ecea8825192f3ed7db3568a6b11p1@BC016998
5.62e-12FFCP PHASE1:Hg19::chr10:33214881..33214892,-#_c18f0cac3f14d93a48f6fbe8a872ce15p@chr10:33214881..33214892, -
5.62e-12FFCP PHASE2:Hg19::chr10:33214881..33214892,-#_c18f0cac3f14d93a48f6fbe8a872ce15p@chr10:33214881..33214892, -
6.97e-12FFCP PHASE1:Hg19::chr15:39889186..39889187,+#_24b2bd4150fd934e3bb7ba9957ff3034p@chr15:39889186..39889187, +
6.97e-12FFCP PHASE2:Hg19::chr15:39889186..39889187,+#_24b2bd4150fd934e3bb7ba9957ff3034p@chr15:39889186..39889187, +
1.32e-11FFCP PHASE2:Hg19::chr3:100494130..100494141,-#_fad0ed957d0b77d42a4eb6ea6e32fa5bp@chr3:100494130..100494141, -
1.32e-11FFCP PHASE1:Hg19::chr3:100494130..100494141,-#_fad0ed957d0b77d42a4eb6ea6e32fa5bp@chr3:100494130..100494141, -
1.78e-11FFCP PHASE2:Hg19::chr1:200452556..200452567,-#_8482247b65835b1ccca8ff626d9dec71p@chr1:200452556..200452567, -
1.78e-11FFCP PHASE1:Hg19::chr1:200452556..200452567,-#_8482247b65835b1ccca8ff626d9dec71p@chr1:200452556..200452567, -
2.42e-11FFCP PHASE1:Hg19::chr8:70571757..70571776,+#_8c6a5c5a45910d9a9e0c920d381546e2p@chr8:70571757..70571776, +
2.42e-11FFCP PHASE2:Hg19::chr8:70571757..70571776,+#_8c6a5c5a45910d9a9e0c920d381546e2p@chr8:70571757..70571776, +
3.28e-11FFCP PHASE2:Hg19::chr3:100566479..100566490,-#_0d40fb809498ca54d424307400877ebap@chr3:100566479..100566490, -
3.28e-11FFCP PHASE1:Hg19::chr3:100566479..100566490,-#_0d40fb809498ca54d424307400877ebap@chr3:100566479..100566490, -
4.01e-11FFCP PHASE2:Hg19::chr8:19615073..19615088,-#_62870ea7ac823fad62c18881e7326c48p10@CSGALNACT1
4.01e-11FFCP PHASE1:Hg19::chr8:19615073..19615088,-#_62870ea7ac823fad62c18881e7326c48p10@CSGALNACT1
4.91e-11FFCP PHASE1:Hg19::chr8:11422197..11422208,-#_d546ce60e0b152901ff2d8737a68ab6bp1@AK131319
4.91e-11FFCP PHASE2:Hg19::chr8:11422197..11422208,-#_d546ce60e0b152901ff2d8737a68ab6bp1@AK131319
5.05e-11FFCP PHASE1:Hg19::chr16:367222..367228,+#_bb64354cc3b56f0406b7c1d4a3cad7fdp@chr16:367222..367228, +
5.05e-11FFCP PHASE2:Hg19::chr16:367222..367228,+#_bb64354cc3b56f0406b7c1d4a3cad7fdp@chr16:367222..367228, +

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