Personal tools

UBERON:0000060: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000060
|alt_id=UBERON:0009915
|name=anatomical wall
|namespace=
|def="Anatomical organ component enclosing an organ cavity." [FMA:82482]
|xref=EMAPA:25036;;FMA:82482;;galen:Wall
|is_a=UBERON:0000061
|synonym="wall" EXACT [];;"wall of organ" EXACT [FMA:82482]
|comment=merged FMA organ wall in to this class
|comment=merged FMA organ wall in to this class
|alt_id=UBERON:0009915
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical organ component enclosing an organ cavity." [FMA:82482]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000060
|is_a=UBERON:0000064
|is_obsolete=
|located_in=
|located_in=
|name=anatomical wall
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="wall" EXACT [];;"wall of organ" EXACT [FMA:82482]
|union_of=
|xref=EMAPA:25036;;FMA:82482;;galen:Wall
}}
}}

Revision as of 10:50, 12 September 2014

Name:anatomical wall
Definition:"Anatomical organ component enclosing an organ cavity." [FMA:82482]
Xrefs:
links:

EMAPA:25036
FMA:82482

galen:Wall
Synonyms: "wall" EXACT []
"wall of organ" EXACT [FMA:82482]
Comments:merged FMA organ wall in to this class
Alt_id: UBERON:0009915

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0000328 (gut wall),UBERON:0000415 (artery wall),UBERON:0000459 (uterine wall),UBERON:0001256 (wall of urinary bladder),UBERON:0001811 (conjunctiva),UBERON:0003697 (abdominal wall),UBERON:0004663 (aorta wall),UBERON:0004894 (alveolar wall)
part of:UBERON:0000042 (serous membrane),UBERON:0004923 (organ component layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000060 (anatomical wall), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results