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{{UBERON
{{UBERON
|id=UBERON:0001280
|alt_id=UBERON:0003223;;UBERON:FMA_17540-MA_0000366
|name=liver parenchyma
|namespace=
|def="the functional units of the liver including the lobules." [MP:0008986]
|xref=AAO:0010405;;EHDAA2:0001004;;EHDAA:2201;;EMAPA:17203;;FMA:17540;;MA:0000366;;SCTID:363535004;;VHOG:0000539;;XAO:0000454
|is_a=UBERON:0000353;;UBERON:0004119
|synonym="hepatic parenchyma" EXACT [FMA:17540];;"hepatic parenchyme" RELATED [VHOG:0000539];;"liver parenchyme" EXACT [XAO:0000454];;"parenchyma of liver" EXACT [FMA:17540]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:0003223;;UBERON:FMA_17540-MA_0000366
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the functional units of the liver including the lobules." [MP:0008986]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0005171;;UBERON:0008835
|develops_from=UBERON:0005171;;UBERON:0008835
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001280
|is_a=UBERON:0000353 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=liver parenchyma
|namespace=
|obo_creation_date=
|part_of=UBERON:0002107
|part_of=UBERON:0002107
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="hepatic parenchyma" EXACT [FMA:17540];;"hepatic parenchyme" RELATED [VHOG:0000539];;"liver parenchyme" EXACT [XAO:0000454];;"parenchyma of liver" EXACT [FMA:17540]
|union_of=
|xref=AAO:0010405;;EHDAA2:0001004;;EHDAA:2201;;EMAPA:17203;;FMA:17540;;MA:0000366;;SCTID:363535004;;VHOG:0000539;;XAO:0000454
}}
}}

Revision as of 11:02, 12 September 2014

Name:liver parenchyma
Definition:"the functional units of the liver including the lobules." [MP:0008986]
Xrefs:
links:

AAO:0010405
EHDAA2:0001004
EHDAA:2201
EMAPA:17203
FMA:17540
MA:0000366
SCTID:363535004
VHOG:0000539

XAO:0000454
Synonyms: "hepatic parenchyma" EXACT [FMA:17540]
"hepatic parenchyme" RELATED [VHOG:0000539]
"liver parenchyme" EXACT [XAO:0000454]
"parenchyma of liver" EXACT [FMA:17540]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003223
UBERON:FMA_17540-MA_0000366

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000353(parenchyma),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0005171(hepatic duct),UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0002107(liver)



Children

part of:UBERON:0001171 (portal lobule),UBERON:0004647 (liver lobule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001280 (liver parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.74e-88FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
9.74e-88FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_103e79e5a3c1e504c4a5bd9b992197fap6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:62199266..62199267, +
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:45920408..45920437, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_103e79e5a3c1e504c4a5bd9b992197fap8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_103e79e5a3c1e504c4a5bd9b992197fap@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_103e79e5a3c1e504c4a5bd9b992197fap8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:51831254..51831256, -
3.07e-86FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39513150..39513152, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:124112234..124112240, +

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