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{{UBERON
{{UBERON
|id=UBERON:0002227
|alt_id=UBERON:FMA_75715-MA_0001193
|name=spiral organ of cochlea
|namespace=
|def="The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
|xref=AAO:0011018;;BTO:0001691;;EFO:0001364;;EMAPA:19061;;EMAPA:19151;;EV:0100364;;FMA:75715;;GAID:772;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png;;MA:0001193;;ncithesaurus:Organ_of_Corti;;ncithesaurus:Spiral_Organ_of_Corti;;NIF_GrossAnatomy:birnlex_2526;;XAO:0003145
|is_a=UBERON:0000064;;UBERON:0004120;;UBERON:0004121;;UBERON:0010314
|synonym="basilar papilla" RELATED [BTO:0001691];;"cochlear spiral organ" EXACT [];;"Corti's organ" RELATED [BTO:0001691];;"organ of corti" RELATED [];;"organum spirale" RELATED [BTO:0001691];;"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti];;"spiral organ" EXACT [];;"spiral organ of corti" EXACT []
|comment=Todo - check XAO, taxon constraints
|comment=Todo - check XAO, taxon constraints
|alt_id=UBERON:FMA_75715-MA_0001193
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002227
|is_a=UBERON:0000020 ;;UBERON:0004121 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=spiral organ of cochlea
|namespace=
|obo_creation_date=
|part_of=UBERON:0001855
|part_of=UBERON:0001855
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="basilar papilla" RELATED [BTO:0001691];;"cochlear spiral organ" EXACT [];;"Corti's organ" RELATED [BTO:0001691];;"organ of corti" RELATED [];;"organum spirale" RELATED [BTO:0001691];;"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti];;"spiral organ" EXACT [];;"spiral organ of corti" EXACT []
|union_of=
|xref=AAO:0011018;;BTO:0001691;;EFO:0001364;;EMAPA:19061;;EMAPA:19151;;EV:0100364;;FMA:75715;;GAID:772;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png;;MA:0001193;;ncithesaurus:Organ_of_Corti;;ncithesaurus:Spiral_Organ_of_Corti;;NIF_GrossAnatomy:birnlex_2526;;XAO:0003145
}}
}}

Revision as of 11:13, 12 September 2014

Name:spiral organ of cochlea
Definition:"The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
Xrefs:
links:

AAO:0011018
BTO:0001691
EFO:0001364
EMAPA:19061
EMAPA:19151
EV:0100364
FMA:75715
GAID:772
[1]
[ 200px-Cochlea-crosssection.png 200px-Cochlea-crosssection.png]
MA:0001193
ncithesaurus:Organ_of_Corti
ncithesaurus:Spiral_Organ_of_Corti
NIF_GrossAnatomy:birnlex_2526

XAO:0003145
Synonyms: "basilar papilla" RELATED [BTO:0001691]
"cochlear spiral organ" EXACT []
"Corti's organ" RELATED [BTO:0001691]
"organ of corti" RELATED []
"organum spirale" RELATED [BTO:0001691]
"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti]
"spiral organ" EXACT []
"spiral organ of corti" EXACT []
Comments:Todo - check XAO, taxon constraints
Alt_id: UBERON:FMA_75715-MA_0001193
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001855(cochlear duct of membranous labyrinth)



Children

part of:CL:0000202 (auditory hair cell),CL:0000589 (cochlear inner hair cell),CL:0002490 (organ of Corti supporting cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002227 (spiral organ of cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_94b85a8110f1309d0c218c5f692a21e0p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_94b85a8110f1309d0c218c5f692a21e0p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_94b85a8110f1309d0c218c5f692a21e0p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_94b85a8110f1309d0c218c5f692a21e0p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_94b85a8110f1309d0c218c5f692a21e0p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_94b85a8110f1309d0c218c5f692a21e0p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_94b85a8110f1309d0c218c5f692a21e0p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_94b85a8110f1309d0c218c5f692a21e0p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_94b85a8110f1309d0c218c5f692a21e0p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_94b85a8110f1309d0c218c5f692a21e0p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_94b85a8110f1309d0c218c5f692a21e0p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_94b85a8110f1309d0c218c5f692a21e0p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_94b85a8110f1309d0c218c5f692a21e0p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_94b85a8110f1309d0c218c5f692a21e0p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_94b85a8110f1309d0c218c5f692a21e0p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_94b85a8110f1309d0c218c5f692a21e0p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_94b85a8110f1309d0c218c5f692a21e0p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_94b85a8110f1309d0c218c5f692a21e0p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_94b85a8110f1309d0c218c5f692a21e0p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_94b85a8110f1309d0c218c5f692a21e0p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_94b85a8110f1309d0c218c5f692a21e0p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_94b85a8110f1309d0c218c5f692a21e0p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_94b85a8110f1309d0c218c5f692a21e0p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_94b85a8110f1309d0c218c5f692a21e0p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_94b85a8110f1309d0c218c5f692a21e0p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_94b85a8110f1309d0c218c5f692a21e0p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_94b85a8110f1309d0c218c5f692a21e0p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_94b85a8110f1309d0c218c5f692a21e0p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_94b85a8110f1309d0c218c5f692a21e0p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_94b85a8110f1309d0c218c5f692a21e0p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_94b85a8110f1309d0c218c5f692a21e0p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_94b85a8110f1309d0c218c5f692a21e0p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_94b85a8110f1309d0c218c5f692a21e0p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_94b85a8110f1309d0c218c5f692a21e0p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_94b85a8110f1309d0c218c5f692a21e0p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_94b85a8110f1309d0c218c5f692a21e0p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_94b85a8110f1309d0c218c5f692a21e0p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_94b85a8110f1309d0c218c5f692a21e0p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_94b85a8110f1309d0c218c5f692a21e0p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_94b85a8110f1309d0c218c5f692a21e0p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_94b85a8110f1309d0c218c5f692a21e0p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_94b85a8110f1309d0c218c5f692a21e0p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_94b85a8110f1309d0c218c5f692a21e0p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_94b85a8110f1309d0c218c5f692a21e0p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_94b85a8110f1309d0c218c5f692a21e0p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_94b85a8110f1309d0c218c5f692a21e0p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_94b85a8110f1309d0c218c5f692a21e0p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_94b85a8110f1309d0c218c5f692a21e0p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_94b85a8110f1309d0c218c5f692a21e0p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_94b85a8110f1309d0c218c5f692a21e0p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_94b85a8110f1309d0c218c5f692a21e0p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_94b85a8110f1309d0c218c5f692a21e0p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_94b85a8110f1309d0c218c5f692a21e0p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_94b85a8110f1309d0c218c5f692a21e0p@chr18:42158627..42158630, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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