UBERON:0003071: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0005060;;UBERON:XAO_0000227-ZFA_0000570 | ||
|comment=AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | |comment=AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003056 | |develops_from=UBERON:0003056 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003071 | |||
|is_a=UBERON:0005291 ;;UBERON:0007497 ;;UBERON:0010371 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=eye primordium | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0003056 | |part_of=UBERON:0003056 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="eye anlage" RELATED [XAO:0000227];;"eye field" RELATED [];;"eye placode" EXACT [OBOL:automatic];;"occular primordium" EXACT [];;"ocular primordium" EXACT [];;"optic field" RELATED [];;"optic placode" EXACT [GO:0046619];;"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm];;"optic primordium" EXACT [] | ||
|union_of= | |||
|xref=AAO:0011038;;EFO:0003541;;EHDAA2:0004431;;TAO:0000570;;XAO:0000227;;XAO:0004090;;ZFA:0000570 | |||
}} | }} | ||
Revision as of 11:20, 12 September 2014
| Name: | eye primordium | |
|---|---|---|
| Definition: | "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] | |
| Xrefs: |
| |
| Synonyms: |
"eye anlage" RELATED [XAO:0000227] "eye field" RELATED [] "eye placode" EXACT [OBOL:automatic] "occular primordium" EXACT [] "ocular primordium" EXACT [] "optic field" RELATED [] "optic placode" EXACT [GO:0046619] "optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm] "optic primordium" EXACT [] | |
| Comments: | AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | |
| Alt_id: |
UBERON:0005060 UBERON:XAO_0000227-ZFA_0000570 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium) |
|---|---|
| develops_from: | UBERON:0003056(pre-chordal neural plate) |
| part_of: | UBERON:0003056(pre-chordal neural plate) |
Children
| develops from: | UBERON:0004128 (optic vesicle),UBERON:0010312 (immature eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003071 (eye primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
