UBERON:0003464: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc | |comment=Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc | ||
|created_by= | |created_by= | ||
| | |def="A bone that is part of a hindlimb region. Examples: any foot phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0010885 | |develops_from=UBERON:0010885 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003464 | |||
|is_a=UBERON:0002428 ;;UBERON:0010742 ;;UBERON:0015022 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0001441;;UBERON:0002103 | |name=hindlimb bone | ||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0002103;;UBERON:0001441;;UBERON:0002103 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="bone of hind limb" EXACT [OBOL:automatic];;"bone of hindlimb" EXACT [OBOL:automatic];;"bone of inferior member" EXACT [OBOL:automatic];;"bone of lower extremity" EXACT [OBOL:automatic];;"bone organ of hind limb" EXACT [OBOL:automatic];;"bone organ of hindlimb" EXACT [OBOL:automatic];;"bone organ of inferior member" EXACT [OBOL:automatic];;"bone organ of lower extremity" EXACT [OBOL:automatic];;"hind limb bone" EXACT [OBOL:automatic];;"hind limb bone organ" EXACT [OBOL:automatic];;"hindlimb bone organ" EXACT [OBOL:automatic];;"inferior member bone" EXACT [OBOL:automatic];;"inferior member bone organ" EXACT [OBOL:automatic];;"lower extremity bone" EXACT [OBOL:automatic];;"lower extremity bone organ" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=EFO:0003842;;GAID:198;;ncithesaurus:Bone_of_the_Lower_Extremity;;SCTID:361370006 | |||
}} | }} | ||
Revision as of 11:24, 12 September 2014
| Name: | hindlimb bone | ||
|---|---|---|---|
| Definition: | "A bone that is part of a hindlimb region. Examples: any foot phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"bone of hind limb" EXACT [OBOL:automatic] "bone of hindlimb" EXACT [OBOL:automatic] "bone of inferior member" EXACT [OBOL:automatic] "bone of lower extremity" EXACT [OBOL:automatic] "bone organ of hind limb" EXACT [OBOL:automatic] "bone organ of hindlimb" EXACT [OBOL:automatic] "bone organ of inferior member" EXACT [OBOL:automatic] "bone organ of lower extremity" EXACT [OBOL:automatic] "hind limb bone" EXACT [OBOL:automatic] "hind limb bone organ" EXACT [OBOL:automatic] "hindlimb bone organ" EXACT [OBOL:automatic] "inferior member bone" EXACT [OBOL:automatic] "inferior member bone organ" EXACT [OBOL:automatic] "lower extremity bone" EXACT [OBOL:automatic] "lower extremity bone organ" EXACT [OBOL:automatic] | ||
| Comments: | Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002428(limb bone),UBERON:0010742(bone of pelvic complex),UBERON:0015022(hindlimb endochondral element) |
|---|---|
| develops_from: | UBERON:0010885(hindlimb cartilage element) |
| part_of: | UBERON:0002103(hindlimb),UBERON:0001441(hindlimb skeleton),UBERON:0002103(hindlimb) |
Children
| is a: | UBERON:0003608 (hindlimb long bone),UBERON:0005893 (leg bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003464 (hindlimb bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1d32d6d484fb9d1195edb887dba3e971 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1d32d6d484fb9d1195edb887dba3e971 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_61c81adaa8b65390007c8c86323697e7 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_61c81adaa8b65390007c8c86323697e7 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_61c81adaa8b65390007c8c86323697e7 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_61c81adaa8b65390007c8c86323697e7 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_61c81adaa8b65390007c8c86323697e7 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_61c81adaa8b65390007c8c86323697e7 | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_bc9311a12c0af0b3c05d513dc9472606 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_bc9311a12c0af0b3c05d513dc9472606 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_b83f8a97b05cc9fe9991c4069b8b0d90 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_b83f8a97b05cc9fe9991c4069b8b0d90 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9315c33a8438d1c591713a9970d09150 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9315c33a8438d1c591713a9970d09150 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9315c33a8438d1c591713a9970d09150 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9315c33a8438d1c591713a9970d09150 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9315c33a8438d1c591713a9970d09150 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9315c33a8438d1c591713a9970d09150 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9315c33a8438d1c591713a9970d09150 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9315c33a8438d1c591713a9970d09150 | p@chr16:24096441..24096449, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_80c29dca8ac440edc05a23bf9e0e8b2f | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_80c29dca8ac440edc05a23bf9e0e8b2f | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_9ac547b8f1135efe9f1f30af94b86093 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_9ac547b8f1135efe9f1f30af94b86093 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_de6114d84538957fac675746bc0849e4 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_de6114d84538957fac675746bc0849e4 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fb7987871bdebe6d6a1b95ead35f8dc1 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fb7987871bdebe6d6a1b95ead35f8dc1 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_1925a60e9ac64ceb98389627fee823e4 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_1925a60e9ac64ceb98389627fee823e4 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_9097d23b952b559d094fc3e75d12c092 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_9097d23b952b559d094fc3e75d12c092 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_0769c1ac6e47aa7f369e23210e117294 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_0769c1ac6e47aa7f369e23210e117294 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_6d33d3b540b75dd04007270a28600642 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_6d33d3b540b75dd04007270a28600642 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_6d33d3b540b75dd04007270a28600642 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_6d33d3b540b75dd04007270a28600642 | p2@Oscar |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_c9ab3e90febb30fa81d3dd58268cb10b | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_c9ab3e90febb30fa81d3dd58268cb10b | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_c9ab3e90febb30fa81d3dd58268cb10b | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_c9ab3e90febb30fa81d3dd58268cb10b | p4@Lipc |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_6b15147437e3448dea045b610009606e | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_6b15147437e3448dea045b610009606e | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_2b6b368f8881c4566922943cd97e753b | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_2b6b368f8881c4566922943cd97e753b | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_2b6b368f8881c4566922943cd97e753b | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_2b6b368f8881c4566922943cd97e753b | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_f4c89368791382caf554c95d2b444153 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_f4c89368791382caf554c95d2b444153 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_5ef1f082869c0fa679a87b2354113453 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_5ef1f082869c0fa679a87b2354113453 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_5ef1f082869c0fa679a87b2354113453 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_5ef1f082869c0fa679a87b2354113453 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_c5d1e0e089d7d4cbb31296864bc34920 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_c5d1e0e089d7d4cbb31296864bc34920 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_7f067442785abf93e40e5d3b04a81e6d | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_7f067442785abf93e40e5d3b04a81e6d | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_5e47136b67bba3e6ba54028b5869a50a | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_5e47136b67bba3e6ba54028b5869a50a | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_a212dad2bde26e8a3a8126912d64fa7f | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_a212dad2bde26e8a3a8126912d64fa7f | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_659d25280593011f794925d7b7e259bd | p1@Msmp |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_659d25280593011f794925d7b7e259bd | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_659d25280593011f794925d7b7e259bd | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_659d25280593011f794925d7b7e259bd | p1@Msmp |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_3bda8bde65fe2b0083fcef921ca814b4 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_3bda8bde65fe2b0083fcef921ca814b4 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_3bda8bde65fe2b0083fcef921ca814b4 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_3bda8bde65fe2b0083fcef921ca814b4 | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_bfe6ce6b11499262608f5c2230d05159 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_bfe6ce6b11499262608f5c2230d05159 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_500ff9c6c36220d1aa2d4414225fcae4 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_500ff9c6c36220d1aa2d4414225fcae4 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_a04ea4d3c7dada9e9ff768cab9ecf65d | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_a04ea4d3c7dada9e9ff768cab9ecf65d | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_e1458260b08373d9639d37816deca62d | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_e1458260b08373d9639d37816deca62d | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_0c5b633e2b252cbc7d24e4dfcb1a1737 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_0c5b633e2b252cbc7d24e4dfcb1a1737 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_e20ad0d2f5ff59acd149e355032f4718 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_e20ad0d2f5ff59acd149e355032f4718 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_548625629c55258fd4bfafd8e62f047f | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_548625629c55258fd4bfafd8e62f047f | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_548625629c55258fd4bfafd8e62f047f | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_548625629c55258fd4bfafd8e62f047f | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_d1aa5f95e0a571c4b1a2828f342aaafe | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_d1aa5f95e0a571c4b1a2828f342aaafe | p4@Sgca |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_dbc2e5cc325854b724ab0400b3fba00b | p1@Mepe |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_dbc2e5cc325854b724ab0400b3fba00b | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_39fbe189171ab46ba0af1669c2f3b2c8 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_39fbe189171ab46ba0af1669c2f3b2c8 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_39fbe189171ab46ba0af1669c2f3b2c8 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_39fbe189171ab46ba0af1669c2f3b2c8 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_0e43d619188a4c3fdcf11e3d84fa85f3 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_0e43d619188a4c3fdcf11e3d84fa85f3 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_0e43d619188a4c3fdcf11e3d84fa85f3 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_0e43d619188a4c3fdcf11e3d84fa85f3 | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_3afdf57cf2f1f64af65d1925c8ef43c2 | p2@Siglec15 |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_3afdf57cf2f1f64af65d1925c8ef43c2 | p@chr2:180890942..180890956, - |
