Personal tools

UBERON:0005382: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005382
|alt_id=
|name=dorsal striatum
|namespace=
|def="Those portions of the caudate nucleus and especially the putamen located generally superior to a plane representing the anterior commissure; also called the dorsal basal ganglia; may function in motor activities with cognitive origins." [BTO:0004701]
|xref=ABA:STRd;;BTO:0004701;;FMA:77620;;MA:0002971;;NIF_GrossAnatomy:nlx_anat_1010001
|is_a=UBERON:0003528
|synonym="caudoputamen" RELATED [NIF_GrossAnatomy:nlx_anat_100312];;"striatum dorsale" RELATED [BTO:0004701]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Those portions of the caudate nucleus and especially the putamen located generally superior to a plane representing the anterior commissure; also called the dorsal basal ganglia; may function in motor activities with cognitive origins." [BTO:0004701]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005382
|is_a=UBERON:0011300
|is_obsolete=
|located_in=
|located_in=
|name=dorsal striatum
|namespace=
|obo_creation_date=
|part_of=UBERON:0002435
|part_of=UBERON:0002435
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="caudoputamen" RELATED [NIF_GrossAnatomy:nlx_anat_100312];;"striatum dorsale" RELATED [BTO:0004701]
|union_of=
|xref=ABA:STRd;;BTO:0004701;;FMA:77620;;MA:0002971;;NIF_GrossAnatomy:nlx_anat_1010001
}}
}}

Revision as of 11:35, 12 September 2014

Name:dorsal striatum
Definition:"Those portions of the caudate nucleus and especially the putamen located generally superior to a plane representing the anterior commissure; also called the dorsal basal ganglia; may function in motor activities with cognitive origins." [BTO:0004701]
Xrefs:
links:

ABA:STRd
BTO:0004701
FMA:77620
MA:0002971

NIF_GrossAnatomy:nlx_anat_1010001
Synonyms: "caudoputamen" RELATED [NIF_GrossAnatomy:nlx_anat_100312]
"striatum dorsale" RELATED [BTO:0004701]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011300(gray matter of telencephalon)
part_of:UBERON:0002435(striatum)



Children

part of:UBERON:0001873 (caudate nucleus),UBERON:0005383 (caudate-putamen)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005382 (dorsal striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_c0fba7cab22b79dbead4476a7b8546efp5@ENST00000514240
2.79e-195FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_c0fba7cab22b79dbead4476a7b8546efp5@ENST00000514240
2.79e-195FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_c0fba7cab22b79dbead4476a7b8546efp@chr18:54898506..54898515, +
2.79e-195FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_c0fba7cab22b79dbead4476a7b8546efp@chr17:7271778..7271784, +
2.79e-195FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_c0fba7cab22b79dbead4476a7b8546efp@chr18:47967443..47967452, -
2.79e-195FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_c0fba7cab22b79dbead4476a7b8546efp@chr18:54898506..54898515, +
2.79e-195FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_c0fba7cab22b79dbead4476a7b8546efp@chr18:47967443..47967452, -
2.79e-195FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_c0fba7cab22b79dbead4476a7b8546efp@chr17:7271778..7271784, +
3.27e-147FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr22:28195426..28195433, -
3.27e-147FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr12:6031299..6031315, -
3.27e-147FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr7:131761558..131761590, -
3.27e-147FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr18:47967428..47967437, -
3.27e-147FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr13:112726433..112726446, +
3.27e-147FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr13:112726433..112726446, +
3.27e-147FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr2:152828264..152828299, -
3.27e-147FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr1:31352916..31352926, -
3.27e-147FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr2:152828264..152828299, -
3.27e-147FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr1:31352916..31352926, -
3.27e-147FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr18:47967428..47967437, -
3.27e-147FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr22:28195426..28195433, -
3.27e-147FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chrX:45984754..45984763, +
3.27e-147FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr12:6031299..6031315, -
3.27e-147FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chr7:131761558..131761590, -
3.27e-147FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_cc4bb57ecade6a6e1a3369ca41dc97dfp@chrX:45984754..45984763, +
5.41e-147FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_d97f0ae9d33e3230e6712b012294139ap@chr8:19799565..19799589, -
5.41e-147FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_d97f0ae9d33e3230e6712b012294139ap@chr8:19799565..19799589, -
5.41e-147FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_d97f0ae9d33e3230e6712b012294139ap@chr14:78638610..78638621, +
5.41e-147FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_d97f0ae9d33e3230e6712b012294139ap@chr14:78638610..78638621, +
8.98e-131FFCP PHASE1:Hg19::chr5:132607538..132607543,+#_81d6978beee91680efc3dc08f3c9544ap@chr5:132607538..132607543, +
8.98e-131FFCP PHASE1:Hg19::chr10:26097547..26097552,+#_81d6978beee91680efc3dc08f3c9544ap@chr10:26097547..26097552, +
8.98e-131FFCP PHASE1:Hg19::chr4:185115370..185115380,-#_81d6978beee91680efc3dc08f3c9544ap@chr4:185115370..185115380, -
8.98e-131FFCP PHASE1:Hg19::chr17:17642493..17642503,+#_81d6978beee91680efc3dc08f3c9544ap@chr17:17642493..17642503, +
8.98e-131FFCP PHASE2:Hg19::chr9:85575924..85575932,+#_81d6978beee91680efc3dc08f3c9544ap@chr9:85575924..85575932, +
8.98e-131FFCP PHASE2:Hg19::chrX:82763874..82763884,+#_81d6978beee91680efc3dc08f3c9544ap@chrX:82763874..82763884, +
8.98e-131FFCP PHASE2:Hg19::chr5:132607538..132607543,+#_81d6978beee91680efc3dc08f3c9544ap@chr5:132607538..132607543, +
8.98e-131FFCP PHASE2:Hg19::chr19:49016307..49016316,-#_81d6978beee91680efc3dc08f3c9544ap@chr19:49016307..49016316, -
8.98e-131FFCP PHASE2:Hg19::chr10:26097547..26097552,+#_81d6978beee91680efc3dc08f3c9544ap@chr10:26097547..26097552, +
8.98e-131FFCP PHASE1:Hg19::chr17:17642516..17642523,+#_81d6978beee91680efc3dc08f3c9544ap@chr17:17642516..17642523, +
8.98e-131FFCP PHASE2:Hg19::chr14:64884595..64884607,+#_81d6978beee91680efc3dc08f3c9544ap@chr14:64884595..64884607, +
8.98e-131FFCP PHASE2:Hg19::chr4:156417309..156417316,+#_81d6978beee91680efc3dc08f3c9544ap@chr4:156417309..156417316, +
8.98e-131FFCP PHASE1:Hg19::chr3:11019677..11019690,-#_81d6978beee91680efc3dc08f3c9544ap@chr3:11019677..11019690, -
8.98e-131FFCP PHASE1:Hg19::chr14:64884595..64884607,+#_81d6978beee91680efc3dc08f3c9544ap@chr14:64884595..64884607, +
8.98e-131FFCP PHASE1:Hg19::chr4:156417309..156417316,+#_81d6978beee91680efc3dc08f3c9544ap@chr4:156417309..156417316, +
8.98e-131FFCP PHASE1:Hg19::chr19:49016307..49016316,-#_81d6978beee91680efc3dc08f3c9544ap@chr19:49016307..49016316, -
8.98e-131FFCP PHASE2:Hg19::chr17:17642493..17642503,+#_81d6978beee91680efc3dc08f3c9544ap@chr17:17642493..17642503, +
8.98e-131FFCP PHASE2:Hg19::chr4:185115354..185115359,-#_81d6978beee91680efc3dc08f3c9544ap@chr4:185115354..185115359, -
8.98e-131FFCP PHASE2:Hg19::chr15:26273479..26273488,+#_81d6978beee91680efc3dc08f3c9544ap@chr15:26273479..26273488, +
8.98e-131FFCP PHASE1:Hg19::chr1:244945778..244945781,-#_81d6978beee91680efc3dc08f3c9544ap@chr1:244945778..244945781, -
8.98e-131FFCP PHASE1:Hg19::chr2:132589601..132589606,-#_81d6978beee91680efc3dc08f3c9544ap2@ENST00000437330
8.98e-131FFCP PHASE1:Hg19::chr6:145132482..145132485,+#_81d6978beee91680efc3dc08f3c9544ap@chr6:145132482..145132485, +
8.98e-131FFCP PHASE2:Hg19::chr3:11019677..11019690,-#_81d6978beee91680efc3dc08f3c9544ap@chr3:11019677..11019690, -
8.98e-131FFCP PHASE2:Hg19::chr17:17642516..17642523,+#_81d6978beee91680efc3dc08f3c9544ap@chr17:17642516..17642523, +
8.98e-131FFCP PHASE1:Hg19::chr4:185115354..185115359,-#_81d6978beee91680efc3dc08f3c9544ap@chr4:185115354..185115359, -
8.98e-131FFCP PHASE2:Hg19::chr4:185115370..185115380,-#_81d6978beee91680efc3dc08f3c9544ap@chr4:185115370..185115380, -
8.98e-131FFCP PHASE1:Hg19::chrX:82763874..82763884,+#_81d6978beee91680efc3dc08f3c9544ap@chrX:82763874..82763884, +
8.98e-131FFCP PHASE1:Hg19::chr9:85575924..85575932,+#_81d6978beee91680efc3dc08f3c9544ap@chr9:85575924..85575932, +
8.98e-131FFCP PHASE1:Hg19::chr15:26273479..26273488,+#_81d6978beee91680efc3dc08f3c9544ap@chr15:26273479..26273488, +
8.98e-131FFCP PHASE2:Hg19::chr1:244945778..244945781,-#_81d6978beee91680efc3dc08f3c9544ap@chr1:244945778..244945781, -
8.98e-131FFCP PHASE2:Hg19::chr2:132589601..132589606,-#_81d6978beee91680efc3dc08f3c9544ap2@ENST00000437330
8.98e-131FFCP PHASE2:Hg19::chr6:145132482..145132485,+#_81d6978beee91680efc3dc08f3c9544ap@chr6:145132482..145132485, +
2.33e-118FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_5aa33dcd6f770091d70267002c21573ep@chr17:19390211..19390223, +
2.33e-118FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_5aa33dcd6f770091d70267002c21573ep@chr2:3853961..3853984, +
2.33e-118FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_5aa33dcd6f770091d70267002c21573ep@chr15:35546024..35546035, -
2.33e-118FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_5aa33dcd6f770091d70267002c21573ep@chr17:19390211..19390223, +
2.33e-118FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_5aa33dcd6f770091d70267002c21573ep@chr15:35546024..35546035, -
2.33e-118FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_5aa33dcd6f770091d70267002c21573ep@chr2:3853961..3853984, +
3.48e-118FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_27be73be15ccc21bdfcec869244acaa5p@chr20:9496091..9496106, +
3.48e-118FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_27be73be15ccc21bdfcec869244acaa5p2@BC051739
3.48e-118FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_27be73be15ccc21bdfcec869244acaa5p@chr12:117513131..117513155, -
3.48e-118FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_27be73be15ccc21bdfcec869244acaa5p@chr10:97261874..97261887, -
3.48e-118FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_27be73be15ccc21bdfcec869244acaa5p@chr10:97261874..97261887, -
3.48e-118FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_27be73be15ccc21bdfcec869244acaa5p@chr12:117513131..117513155, -
3.48e-118FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_27be73be15ccc21bdfcec869244acaa5p@chr3:57807798..57807809, +
3.48e-118FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_27be73be15ccc21bdfcec869244acaa5p@chr3:57807798..57807809, +
3.48e-118FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_27be73be15ccc21bdfcec869244acaa5p@chr20:9496091..9496106, +
3.48e-118FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_27be73be15ccc21bdfcec869244acaa5p2@BC051739
7.78e-118FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_e02b31f66eafaa3f492403b0418e06d2p6@SYNDIG1L
7.78e-118FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_e02b31f66eafaa3f492403b0418e06d2p21@SLC4A4
7.78e-118FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_e02b31f66eafaa3f492403b0418e06d2p6@SYNDIG1L
7.78e-118FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_e02b31f66eafaa3f492403b0418e06d2p14@ASTN1
7.78e-118FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_e02b31f66eafaa3f492403b0418e06d2p14@ASTN1
7.78e-118FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_e02b31f66eafaa3f492403b0418e06d2p21@SLC4A4
1.16e-117FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_3f4fcd50357c8c098ac766558e5c64e8p23@KCNAB1
1.16e-117FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_3f4fcd50357c8c098ac766558e5c64e8p23@KCNAB1
4.06e-99FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_19f8967ae60b5a089020520bffad13b4p1@ENST00000421878
4.06e-99FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_19f8967ae60b5a089020520bffad13b4p@chr2:212989626..212989648, -
4.06e-99FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_19f8967ae60b5a089020520bffad13b4p@chr11:26497871..26497889, +
4.06e-99FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_19f8967ae60b5a089020520bffad13b4p1@ENST00000421878
4.06e-99FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_19f8967ae60b5a089020520bffad13b4p@chr19:1236637..1236645, -
4.06e-99FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_19f8967ae60b5a089020520bffad13b4p@chr11:26497871..26497889, +
4.06e-99FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_19f8967ae60b5a089020520bffad13b4p@chr5:121648127..121648167, -
4.06e-99FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_19f8967ae60b5a089020520bffad13b4p@chr5:121648127..121648167, -
4.06e-99FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_19f8967ae60b5a089020520bffad13b4p@chr19:1236637..1236645, -
4.06e-99FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_19f8967ae60b5a089020520bffad13b4p@chr2:212989626..212989648, -
5.69e-99FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_94995734d31fb6a93861b3fac2ec023bp8@CADM2
5.69e-99FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_94995734d31fb6a93861b3fac2ec023bp8@CADM2
5.69e-99FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_94995734d31fb6a93861b3fac2ec023bp@chr2:234227370..234227385, +
5.69e-99FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_94995734d31fb6a93861b3fac2ec023bp@chr10:97261901..97261919, -
5.69e-99FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_94995734d31fb6a93861b3fac2ec023bp@chr2:234227370..234227385, +
5.69e-99FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_94995734d31fb6a93861b3fac2ec023bp1@LINC00523

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005382&oldid=3274443"