UBERON:0007277: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003076 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0007277 | |||
|is_a=UBERON:0006598 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=presumptive hindbrain | ||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0006238 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=EFO:0003440;;TAO:0000569;;ZFA:0000569 | |||
}} | }} | ||
Revision as of 11:43, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0006598(presumptive structure) |
|---|---|
| develops_from: | UBERON:0003076(posterior neural tube) |
| part_of: | UBERON:0006238(future brain) |
Children
| develops from: | UBERON:0002028 (hindbrain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007277 (presumptive hindbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.71e-110 | FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_68c021991af7067ce93c2f3e81d0a29f | p@chr2:72381655..72381673, - |
| 1.71e-110 | FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_68c021991af7067ce93c2f3e81d0a29f | p@chr2:72381655..72381673, - |
| 5.84e-89 | FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_252f0ef80f50fd74743ee022c61862e5 | p1@SLC6A5 |
| 5.84e-89 | FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_252f0ef80f50fd74743ee022c61862e5 | p1@SLC6A5 |
| 2.65e-84 | FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_255d149ee939be3538b87af0e123cdb5 | p3@CRTAM |
| 2.65e-84 | FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_255d149ee939be3538b87af0e123cdb5 | p3@CRTAM |
| 3.05e-84 | FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_8b7864b35933ba594696c87384b4c007 | p1@BARHL1 |
| 3.05e-84 | FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_8b7864b35933ba594696c87384b4c007 | p1@BARHL1 |
| 4.43e-82 | FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_b6930b0f3a58041856b6b2ded15839f8 | p@chr6:152884391..152884402, - |
| 4.43e-82 | FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_b6930b0f3a58041856b6b2ded15839f8 | p@chr4:117873850..117873861, - |
| 4.43e-82 | FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_b6930b0f3a58041856b6b2ded15839f8 | p@chr6:152884391..152884402, - |
| 4.43e-82 | FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_b6930b0f3a58041856b6b2ded15839f8 | p@chr4:117873850..117873861, - |
| 6.69e-74 | FFCP PHASE2:Hg19::chr6:152884406..152884453,-#_f94f5933eddb4090785b3ed0549ba33c | p@chr6:152884406..152884453, - |
| 6.69e-74 | FFCP PHASE1:Hg19::chr6:152884406..152884453,-#_f94f5933eddb4090785b3ed0549ba33c | p@chr6:152884406..152884453, - |
| 1.11e-73 | FFCP PHASE2:Hg19::chr13:100311142..100311153,+#_2f83c01b797eeb98f10fdd2e2129127d | p@chr13:100311142..100311153, + |
| 1.11e-73 | FFCP PHASE1:Hg19::chr13:100311142..100311153,+#_2f83c01b797eeb98f10fdd2e2129127d | p@chr13:100311142..100311153, + |
| 4.59e-73 | FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_7ace898e1f96e2cb4740cb632489aacb | p@chr10:130489605..130489614, - |
| 4.59e-73 | FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_7ace898e1f96e2cb4740cb632489aacb | p@chr10:130489605..130489614, - |
| 3.5e-70 | FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_e82cf00b4eeb04842b9a8fed256d7e5b | p9@TRPM3 |
| 3.5e-70 | FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_e82cf00b4eeb04842b9a8fed256d7e5b | p9@TRPM3 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr11:43855489..43855503,-#_a937bac231da90907b2ce665bf2a0c52 | p1@ENST00000524643 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr5:161112715..161112736,+#_a937bac231da90907b2ce665bf2a0c52 | p1@GABRA6 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr11:43855489..43855503,-#_a937bac231da90907b2ce665bf2a0c52 | p1@ENST00000524643 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr5:161112715..161112736,+#_a937bac231da90907b2ce665bf2a0c52 | p1@GABRA6 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr3:147110022..147110050,-#_a937bac231da90907b2ce665bf2a0c52 | p8@ZIC4 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr3:147110022..147110050,-#_a937bac231da90907b2ce665bf2a0c52 | p8@ZIC4 |
| 1.45e-68 | FFCP PHASE2:Hg19::chr6:72922590..72922605,+#_5d1ca1646482e189b4562729bdb904cc | p5@RIMS1 |
| 1.45e-68 | FFCP PHASE1:Hg19::chr6:72922590..72922605,+#_5d1ca1646482e189b4562729bdb904cc | p5@RIMS1 |
| 1.67e-68 | FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_cb53461ff11610d7c75c1c7af85ed262 | p17@BDNF |
| 1.67e-68 | FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_cb53461ff11610d7c75c1c7af85ed262 | p17@BDNF |
| 6.16e-67 | FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_484915dd3afcb085114590442e4e468e | p2@LOC100505835 |
| 6.16e-67 | FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_484915dd3afcb085114590442e4e468e | p2@LOC100505835 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr5:161112968..161112988,+#_a441d8eedf5a6701a552659d8bd53cc4 | p3@GABRA6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr3:98519943..98519958,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr3:98519943..98519958, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr1:16366392..16366411,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr1:16366392..16366411, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:60049016..60049032,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr14:60049016..60049032, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr18:8783586..8783597,+#_a441d8eedf5a6701a552659d8bd53cc4 | p2@CCDC165 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr20:45061746..45061763,-#_a441d8eedf5a6701a552659d8bd53cc4 | p4@ELMO2 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:72922614..72922626,+#_a441d8eedf5a6701a552659d8bd53cc4 | p19@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr5:161112968..161112988,+#_a441d8eedf5a6701a552659d8bd53cc4 | p3@GABRA6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_a441d8eedf5a6701a552659d8bd53cc4 | p29@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr20:39790925..39790940,+#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr20:39790925..39790940, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_a441d8eedf5a6701a552659d8bd53cc4 | p22@CA10 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:588423..588441,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr17:588423..588441, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr20:45061746..45061763,-#_a441d8eedf5a6701a552659d8bd53cc4 | p4@ELMO2 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr2:149835088..149835109,+#_a441d8eedf5a6701a552659d8bd53cc4 | p9@KIF5C |
| 5.11e-66 | FFCP PHASE1:Hg19::chr15:81489280..81489292,+#_a441d8eedf5a6701a552659d8bd53cc4 | p15@IL16 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:36720287..36720302,-#_a441d8eedf5a6701a552659d8bd53cc4 | p18@SRCIN1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:77582905..77582916,+#_a441d8eedf5a6701a552659d8bd53cc4 | p5@TMEM63C |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:52168958..52169000,+#_a441d8eedf5a6701a552659d8bd53cc4 | p27@FRMD6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:60049016..60049032,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr14:60049016..60049032, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr11:122733033..122733052,+#_a441d8eedf5a6701a552659d8bd53cc4 | p4@CRTAM |
| 5.11e-66 | FFCP PHASE2:Hg19::chr5:161112654..161112669,+#_a441d8eedf5a6701a552659d8bd53cc4 | p2@GABRA6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr5:161112654..161112669,+#_a441d8eedf5a6701a552659d8bd53cc4 | p2@GABRA6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr1:16366392..16366411,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr1:16366392..16366411, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr2:149835088..149835109,+#_a441d8eedf5a6701a552659d8bd53cc4 | p9@KIF5C |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:36720287..36720302,-#_a441d8eedf5a6701a552659d8bd53cc4 | p18@SRCIN1 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr20:39790925..39790940,+#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr20:39790925..39790940, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr3:98519943..98519958,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr3:98519943..98519958, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_a441d8eedf5a6701a552659d8bd53cc4 | p2@CU680380 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr18:8783586..8783597,+#_a441d8eedf5a6701a552659d8bd53cc4 | p2@CCDC165 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr17:72857611..72857619, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:127533959..127533972,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr6:127533959..127533972, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr17:72857611..72857619, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr3:147125238..147125275,+#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr3:147125238..147125275, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr18:8783637..8783650,+#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr18:8783637..8783650, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr11:122733033..122733052,+#_a441d8eedf5a6701a552659d8bd53cc4 | p4@CRTAM |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:77582905..77582916,+#_a441d8eedf5a6701a552659d8bd53cc4 | p5@TMEM63C |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:34073743..34073761,-#_a441d8eedf5a6701a552659d8bd53cc4 | p1@GRM4 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_a441d8eedf5a6701a552659d8bd53cc4 | p11@RAB37 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_a441d8eedf5a6701a552659d8bd53cc4 | p4@AB384137 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_a441d8eedf5a6701a552659d8bd53cc4 | p4@AB384137 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_a441d8eedf5a6701a552659d8bd53cc4 | p22@CA10 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:72922614..72922626,+#_a441d8eedf5a6701a552659d8bd53cc4 | p19@RIMS1 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:127533978..127533993,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr6:127533978..127533993, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_a441d8eedf5a6701a552659d8bd53cc4 | p29@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr3:147125238..147125275,+#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr3:147125238..147125275, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_a441d8eedf5a6701a552659d8bd53cc4 | p1@KIAA1024 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:588423..588441,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr17:588423..588441, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr15:81489280..81489292,+#_a441d8eedf5a6701a552659d8bd53cc4 | p15@IL16 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:60031159..60031181,-#_a441d8eedf5a6701a552659d8bd53cc4 | p1@ENST00000556936 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr18:8783637..8783650,+#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr18:8783637..8783650, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:127533978..127533993,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr6:127533978..127533993, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:60031159..60031181,-#_a441d8eedf5a6701a552659d8bd53cc4 | p1@ENST00000556936 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_a441d8eedf5a6701a552659d8bd53cc4 | p1@KIAA1024 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:127533959..127533972,-#_a441d8eedf5a6701a552659d8bd53cc4 | p@chr6:127533959..127533972, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_a441d8eedf5a6701a552659d8bd53cc4 | p2@CU680380 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:52168958..52169000,+#_a441d8eedf5a6701a552659d8bd53cc4 | p27@FRMD6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_a441d8eedf5a6701a552659d8bd53cc4 | p11@RAB37 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:34073743..34073761,-#_a441d8eedf5a6701a552659d8bd53cc4 | p1@GRM4 |
| 1.63e-65 | FFCP PHASE2:Hg19::chr10:62149532..62149539,-#_35868b1c3bdee1baa0bb3307e28f96c8 | p38@ANK3 |
| 1.63e-65 | FFCP PHASE1:Hg19::chr10:62149532..62149539,-#_35868b1c3bdee1baa0bb3307e28f96c8 | p38@ANK3 |
| 2.29e-65 | FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_909d1e3ce28b993e0b49b4f950266aea | p@chrX:106692537..106692551, + |
| 2.29e-65 | FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_909d1e3ce28b993e0b49b4f950266aea | p@chrX:106692537..106692551, + |
| 8.77e-62 | FFCP PHASE2:Hg19::chr7:153445213..153445251,+#_9ac8f1ecc516e57b75f09616f474f555 | p@chr7:153445213..153445251, + |
| 8.77e-62 | FFCP PHASE1:Hg19::chr7:153445213..153445251,+#_9ac8f1ecc516e57b75f09616f474f555 | p@chr7:153445213..153445251, + |
| 9.7e-62 | FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_10388c442398d05618e552008602f7df | p@chr9:8779377..8779397, - |
| 9.7e-62 | FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_10388c442398d05618e552008602f7df | p@chr9:8779377..8779397, - |
| 2.04e-59 | FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_d88a45b4a137dac98448fa44366eb19d | p1@TPH2 |
| 2.04e-59 | FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_d88a45b4a137dac98448fa44366eb19d | p1@TPH2 |
